Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04755

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04745 and HGI48_RS04750 are separated by 4 nucleotidesHGI48_RS04750 and HGI48_RS04755 overlap by 4 nucleotidesHGI48_RS04755 and HGI48_RS04760 are separated by 95 nucleotides HGI48_RS04745: HGI48_RS04745 - hypothetical protein, at 994,273 to 995,142 _RS04745 HGI48_RS04750: HGI48_RS04750 - hypothetical protein, at 995,147 to 995,938 _RS04750 HGI48_RS04755: HGI48_RS04755 - phosphotransferase, at 995,935 to 996,981 _RS04755 HGI48_RS04760: HGI48_RS04760 - hypothetical protein, at 997,077 to 999,779 _RS04760 Position (kb) 995 996 997Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 994.978 kb on + strandat 994.979 kb on - strand, within HGI48_RS04745at 994.982 kb on + strand, within HGI48_RS04745at 995.001 kb on - strand, within HGI48_RS04745at 995.012 kb on + strand, within HGI48_RS04745at 995.024 kb on + strand, within HGI48_RS04745at 995.036 kb on + strand, within HGI48_RS04745at 995.036 kb on + strand, within HGI48_RS04745at 995.036 kb on + strandat 995.037 kb on - strandat 995.037 kb on - strand, within HGI48_RS04745at 995.052 kb on + strand, within HGI48_RS04745at 995.052 kb on + strand, within HGI48_RS04745at 995.053 kb on - strand, within HGI48_RS04745at 995.057 kb on - strandat 995.085 kb on - strandat 995.085 kb on - strandat 995.086 kb on + strandat 995.087 kb on - strandat 995.125 kb on - strandat 995.170 kb on - strandat 995.178 kb on - strandat 995.197 kb on + strandat 995.198 kb on - strandat 995.226 kb on + strandat 995.227 kb on - strand, within HGI48_RS04750at 995.227 kb on - strand, within HGI48_RS04750at 995.227 kb on - strand, within HGI48_RS04750at 995.227 kb on - strand, within HGI48_RS04750at 995.276 kb on + strand, within HGI48_RS04750at 995.318 kb on - strand, within HGI48_RS04750at 995.318 kb on - strand, within HGI48_RS04750at 995.339 kb on - strandat 995.340 kb on + strand, within HGI48_RS04750at 995.341 kb on - strand, within HGI48_RS04750at 995.342 kb on - strand, within HGI48_RS04750at 995.416 kb on + strandat 995.416 kb on + strand, within HGI48_RS04750at 995.417 kb on - strand, within HGI48_RS04750at 995.417 kb on - strand, within HGI48_RS04750at 995.432 kb on - strand, within HGI48_RS04750at 995.457 kb on - strand, within HGI48_RS04750at 995.513 kb on - strand, within HGI48_RS04750at 995.649 kb on + strandat 995.650 kb on - strand, within HGI48_RS04750at 995.654 kb on - strand, within HGI48_RS04750at 995.668 kb on - strand, within HGI48_RS04750at 995.706 kb on + strand, within HGI48_RS04750at 995.709 kb on + strand, within HGI48_RS04750at 995.709 kb on + strand, within HGI48_RS04750at 995.709 kb on + strand, within HGI48_RS04750at 995.710 kb on - strand, within HGI48_RS04750at 995.710 kb on - strand, within HGI48_RS04750at 995.718 kb on + strand, within HGI48_RS04750at 995.776 kb on + strand, within HGI48_RS04750at 995.776 kb on + strand, within HGI48_RS04750at 995.932 kb on + strandat 995.933 kb on - strandat 995.982 kb on - strandat 996.019 kb on - strandat 996.083 kb on - strand, within HGI48_RS04755at 996.348 kb on - strand, within HGI48_RS04755at 996.423 kb on - strand, within HGI48_RS04755at 996.674 kb on - strandat 996.737 kb on + strand, within HGI48_RS04755at 996.798 kb on - strand, within HGI48_RS04755at 996.835 kb on - strand, within HGI48_RS04755at 996.844 kb on + strand, within HGI48_RS04755at 996.863 kb on - strand, within HGI48_RS04755at 996.867 kb on - strand, within HGI48_RS04755at 997.202 kb on - strandat 997.240 kb on - strandat 997.406 kb on + strand, within HGI48_RS04760at 997.437 kb on + strand, within HGI48_RS04760at 997.438 kb on - strand, within HGI48_RS04760at 997.439 kb on + strand, within HGI48_RS04760at 997.442 kb on + strand, within HGI48_RS04760at 997.502 kb on + strand, within HGI48_RS04760at 997.503 kb on - strand, within HGI48_RS04760at 997.664 kb on + strand, within HGI48_RS04760at 997.714 kb on + strand, within HGI48_RS04760at 997.715 kb on - strand, within HGI48_RS04760at 997.715 kb on - strand, within HGI48_RS04760at 997.769 kb on + strand, within HGI48_RS04760at 997.831 kb on + strand, within HGI48_RS04760at 997.832 kb on - strand, within HGI48_RS04760at 997.892 kb on - strandat 997.939 kb on + strand, within HGI48_RS04760at 997.939 kb on + strandat 997.939 kb on + strand, within HGI48_RS04760at 997.939 kb on + strand, within HGI48_RS04760at 997.940 kb on - strand, within HGI48_RS04760

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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994,978 + +1.0
994,979 - HGI48_RS04745 0.81 -1.8
994,982 + HGI48_RS04745 0.81 -1.4
995,001 - HGI48_RS04745 0.84 -2.0
995,012 + HGI48_RS04745 0.85 +0.7
995,024 + HGI48_RS04745 0.86 +1.1
995,036 + HGI48_RS04745 0.88 -1.4
995,036 + HGI48_RS04745 0.88 +2.0
995,036 + +2.5
995,037 - -0.0
995,037 - HGI48_RS04745 0.88 +3.0
995,052 + HGI48_RS04745 0.90 -3.0
995,052 + HGI48_RS04745 0.90 -1.7
995,053 - HGI48_RS04745 0.90 -2.8
995,057 - -1.0
995,085 - +0.3
995,085 - +3.3
995,086 + -1.8
995,087 - +2.0
995,125 - +1.1
995,170 - +1.1
995,178 - -2.5
995,197 + +2.1
995,198 - -1.0
995,226 + +0.4
995,227 - HGI48_RS04750 0.10 +1.8
995,227 - HGI48_RS04750 0.10 +1.9
995,227 - HGI48_RS04750 0.10 -1.8
995,227 - HGI48_RS04750 0.10 -0.4
995,276 + HGI48_RS04750 0.16 -0.2
995,318 - HGI48_RS04750 0.22 -2.2
995,318 - HGI48_RS04750 0.22 -1.6
995,339 - -0.0
995,340 + HGI48_RS04750 0.24 -0.2
995,341 - HGI48_RS04750 0.24 +0.5
995,342 - HGI48_RS04750 0.25 -0.1
995,416 + -0.0
995,416 + HGI48_RS04750 0.34 -0.5
995,417 - HGI48_RS04750 0.34 +1.2
995,417 - HGI48_RS04750 0.34 -1.0
995,432 - HGI48_RS04750 0.36 +2.3
995,457 - HGI48_RS04750 0.39 -1.8
995,513 - HGI48_RS04750 0.46 -2.2
995,649 + +3.4
995,650 - HGI48_RS04750 0.64 +0.3
995,654 - HGI48_RS04750 0.64 -1.0
995,668 - HGI48_RS04750 0.66 -1.6
995,706 + HGI48_RS04750 0.71 +0.1
995,709 + HGI48_RS04750 0.71 +0.3
995,709 + HGI48_RS04750 0.71 +1.4
995,709 + HGI48_RS04750 0.71 +2.0
995,710 - HGI48_RS04750 0.71 +2.1
995,710 - HGI48_RS04750 0.71 -1.4
995,718 + HGI48_RS04750 0.72 +0.6
995,776 + HGI48_RS04750 0.79 +0.0
995,776 + HGI48_RS04750 0.79 -1.4
995,932 + +1.4
995,933 - -1.6
995,982 - +3.4
996,019 - -2.0
996,083 - HGI48_RS04755 0.14 +1.5
996,348 - HGI48_RS04755 0.39 -1.6
996,423 - HGI48_RS04755 0.47 +0.7
996,674 - -0.6
996,737 + HGI48_RS04755 0.77 +0.4
996,798 - HGI48_RS04755 0.82 +1.2
996,835 - HGI48_RS04755 0.86 +2.5
996,844 + HGI48_RS04755 0.87 -1.6
996,863 - HGI48_RS04755 0.89 +0.2
996,867 - HGI48_RS04755 0.89 -1.0
997,202 - -1.8
997,240 - -3.4
997,406 + HGI48_RS04760 0.12 -1.4
997,437 + HGI48_RS04760 0.13 -1.8
997,438 - HGI48_RS04760 0.13 -1.6
997,439 + HGI48_RS04760 0.13 +0.9
997,442 + HGI48_RS04760 0.14 +0.2
997,502 + HGI48_RS04760 0.16 +1.1
997,503 - HGI48_RS04760 0.16 -1.4
997,664 + HGI48_RS04760 0.22 -2.0
997,714 + HGI48_RS04760 0.24 +1.6
997,715 - HGI48_RS04760 0.24 -1.0
997,715 - HGI48_RS04760 0.24 +0.2
997,769 + HGI48_RS04760 0.26 +1.2
997,831 + HGI48_RS04760 0.28 +1.5
997,832 - HGI48_RS04760 0.28 -3.1
997,892 - -0.6
997,939 + HGI48_RS04760 0.32 -0.6
997,939 + -0.6
997,939 + HGI48_RS04760 0.32 +2.3
997,939 + HGI48_RS04760 0.32 -2.5
997,940 - HGI48_RS04760 0.32 -1.4

Or see this region's nucleotide sequence