Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04730

Experiment: Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS04720 and HGI48_RS04725 are separated by 2 nucleotidesHGI48_RS04725 and HGI48_RS04730 are separated by 814 nucleotidesHGI48_RS04730 and HGI48_RS04735 are separated by 30 nucleotides HGI48_RS04720: HGI48_RS04720 - hypothetical protein, at 990,158 to 990,442 _RS04720 HGI48_RS04725: HGI48_RS04725 - HTH domain-containing protein, at 990,445 to 990,563 _RS04725 HGI48_RS04730: HGI48_RS04730 - hypothetical protein, at 991,378 to 992,454 _RS04730 HGI48_RS04735: HGI48_RS04735 - hypothetical protein, at 992,485 to 993,561 _RS04735 Position (kb) 991 992 993Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 990.383 kb on - strand, within HGI48_RS04720at 990.419 kb on - strandat 990.474 kb on + strand, within HGI48_RS04725at 990.474 kb on + strand, within HGI48_RS04725at 990.475 kb on - strandat 990.476 kb on + strand, within HGI48_RS04725at 990.476 kb on + strand, within HGI48_RS04725at 990.476 kb on + strandat 990.477 kb on - strand, within HGI48_RS04725at 990.508 kb on + strand, within HGI48_RS04725at 990.551 kb on + strand, within HGI48_RS04725at 990.552 kb on - strandat 990.580 kb on + strandat 990.583 kb on - strandat 990.584 kb on + strandat 990.584 kb on + strandat 990.585 kb on - strandat 990.613 kb on + strandat 990.617 kb on - strandat 990.617 kb on - strandat 990.637 kb on + strandat 990.637 kb on + strandat 990.638 kb on - strandat 990.683 kb on + strandat 990.683 kb on + strandat 990.684 kb on - strandat 990.684 kb on - strandat 990.693 kb on + strandat 990.696 kb on + strandat 990.702 kb on + strandat 990.702 kb on + strandat 990.750 kb on + strandat 990.750 kb on + strandat 990.750 kb on + strandat 990.750 kb on + strandat 990.751 kb on - strandat 990.751 kb on - strandat 990.785 kb on + strandat 990.785 kb on + strandat 990.839 kb on + strandat 990.840 kb on - strandat 990.840 kb on - strandat 990.840 kb on - strandat 990.871 kb on - strandat 990.894 kb on + strandat 990.895 kb on - strandat 990.895 kb on - strandat 990.938 kb on - strandat 991.049 kb on - strandat 991.115 kb on + strandat 991.118 kb on - strandat 991.175 kb on + strandat 991.291 kb on - strandat 991.307 kb on - strandat 991.337 kb on + strandat 991.377 kb on + strandat 991.552 kb on - strand, within HGI48_RS04730at 991.602 kb on + strand, within HGI48_RS04730at 991.604 kb on + strand, within HGI48_RS04730at 991.626 kb on + strand, within HGI48_RS04730at 991.801 kb on - strand, within HGI48_RS04730at 991.907 kb on + strand, within HGI48_RS04730at 991.908 kb on - strand, within HGI48_RS04730at 992.087 kb on - strand, within HGI48_RS04730at 992.087 kb on - strand, within HGI48_RS04730at 992.087 kb on - strand, within HGI48_RS04730at 992.088 kb on + strand, within HGI48_RS04730at 992.088 kb on + strand, within HGI48_RS04730at 992.168 kb on - strand, within HGI48_RS04730at 992.178 kb on + strand, within HGI48_RS04730at 992.179 kb on - strand, within HGI48_RS04730at 992.184 kb on - strand, within HGI48_RS04730at 992.184 kb on - strand, within HGI48_RS04730at 992.649 kb on - strand, within HGI48_RS04735at 992.733 kb on + strand, within HGI48_RS04735at 992.733 kb on + strand, within HGI48_RS04735at 992.734 kb on - strand, within HGI48_RS04735at 993.094 kb on - strand, within HGI48_RS04735at 993.098 kb on + strandat 993.117 kb on - strand, within HGI48_RS04735at 993.347 kb on + strand, within HGI48_RS04735at 993.401 kb on + strand, within HGI48_RS04735at 993.402 kb on - strand, within HGI48_RS04735

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
remove
990,383 - HGI48_RS04720 0.79 -1.3
990,419 - +0.4
990,474 + HGI48_RS04725 0.24 +0.8
990,474 + HGI48_RS04725 0.24 -1.8
990,475 - -0.6
990,476 + HGI48_RS04725 0.26 -2.2
990,476 + HGI48_RS04725 0.26 -1.8
990,476 + -0.6
990,477 - HGI48_RS04725 0.27 +0.9
990,508 + HGI48_RS04725 0.53 +1.3
990,551 + HGI48_RS04725 0.89 -2.0
990,552 - +1.7
990,580 + -2.0
990,583 - -2.0
990,584 + +1.2
990,584 + -1.8
990,585 - -0.6
990,613 + +1.0
990,617 - -1.4
990,617 - -1.0
990,637 + -1.6
990,637 + -2.2
990,638 - -1.4
990,683 + +0.9
990,683 + -2.2
990,684 - -2.2
990,684 - +1.6
990,693 + +1.9
990,696 + +1.1
990,702 + +0.1
990,702 + -2.4
990,750 + -0.7
990,750 + -0.9
990,750 + -1.4
990,750 + +2.1
990,751 - -0.0
990,751 - +0.8
990,785 + -0.7
990,785 + -0.2
990,839 + -1.6
990,840 - -1.4
990,840 - -2.2
990,840 - -0.6
990,871 - +3.4
990,894 + -0.0
990,895 - +0.4
990,895 - +1.0
990,938 - +3.8
991,049 - +1.4
991,115 + -2.0
991,118 - +0.1
991,175 + +1.9
991,291 - +0.3
991,307 - +0.1
991,337 + +2.5
991,377 + +0.3
991,552 - HGI48_RS04730 0.16 -1.4
991,602 + HGI48_RS04730 0.21 +1.0
991,604 + HGI48_RS04730 0.21 -1.0
991,626 + HGI48_RS04730 0.23 +0.3
991,801 - HGI48_RS04730 0.39 -2.0
991,907 + HGI48_RS04730 0.49 +0.2
991,908 - HGI48_RS04730 0.49 -1.4
992,087 - HGI48_RS04730 0.66 -3.3
992,087 - HGI48_RS04730 0.66 -1.0
992,087 - HGI48_RS04730 0.66 -3.5
992,088 + HGI48_RS04730 0.66 -2.5
992,088 + HGI48_RS04730 0.66 -3.2
992,168 - HGI48_RS04730 0.73 -3.7
992,178 + HGI48_RS04730 0.74 -2.0
992,179 - HGI48_RS04730 0.74 -1.0
992,184 - HGI48_RS04730 0.75 -0.2
992,184 - HGI48_RS04730 0.75 +1.3
992,649 - HGI48_RS04735 0.15 +0.9
992,733 + HGI48_RS04735 0.23 +2.1
992,733 + HGI48_RS04735 0.23 +0.4
992,734 - HGI48_RS04735 0.23 -1.8
993,094 - HGI48_RS04735 0.57 -0.6
993,098 + -0.6
993,117 - HGI48_RS04735 0.59 -3.1
993,347 + HGI48_RS04735 0.80 -0.2
993,401 + HGI48_RS04735 0.85 -1.6
993,402 - HGI48_RS04735 0.85 +1.3

Or see this region's nucleotide sequence