Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04550 and HGI48_RS04555 are separated by 188 nucleotides HGI48_RS04555 and HGI48_RS04560 are separated by 59 nucleotides
HGI48_RS04550: HGI48_RS04550 - alpha/beta hydrolase, at 954,148 to 955,122
_RS04550
HGI48_RS04555: HGI48_RS04555 - LysR family transcriptional regulator, at 955,311 to 956,213
_RS04555
HGI48_RS04560: HGI48_RS04560 - LacI family DNA-binding transcriptional regulator, at 956,273 to 957,259
_RS04560
Position (kb) 955
956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.493 kb on + strand, within HGI48_RS04550 at 954.493 kb on + strand, within HGI48_RS04550 at 954.493 kb on + strand, within HGI48_RS04550 at 954.493 kb on + strand at 954.494 kb on - strand, within HGI48_RS04550 at 954.494 kb on - strand, within HGI48_RS04550 at 954.542 kb on + strand, within HGI48_RS04550 at 954.562 kb on + strand, within HGI48_RS04550 at 954.562 kb on + strand, within HGI48_RS04550 at 954.563 kb on - strand, within HGI48_RS04550 at 954.563 kb on - strand, within HGI48_RS04550 at 954.836 kb on + strand, within HGI48_RS04550 at 954.836 kb on + strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.846 kb on + strand, within HGI48_RS04550 at 954.937 kb on + strand, within HGI48_RS04550 at 954.937 kb on + strand, within HGI48_RS04550 at 954.937 kb on + strand, within HGI48_RS04550 at 954.938 kb on - strand, within HGI48_RS04550 at 954.938 kb on - strand, within HGI48_RS04550 at 954.938 kb on - strand at 954.938 kb on - strand, within HGI48_RS04550 at 954.938 kb on - strand, within HGI48_RS04550 at 954.938 kb on - strand, within HGI48_RS04550 at 954.938 kb on - strand, within HGI48_RS04550 at 955.080 kb on + strand at 955.081 kb on - strand at 955.091 kb on - strand at 955.127 kb on + strand at 955.127 kb on + strand at 955.181 kb on - strand at 955.186 kb on + strand at 955.301 kb on - strand at 955.301 kb on - strand at 955.305 kb on - strand at 955.335 kb on + strand at 955.392 kb on - strand at 955.536 kb on + strand, within HGI48_RS04555 at 955.537 kb on - strand, within HGI48_RS04555 at 955.539 kb on + strand, within HGI48_RS04555 at 955.567 kb on - strand at 955.629 kb on + strand, within HGI48_RS04555 at 955.629 kb on + strand, within HGI48_RS04555 at 955.629 kb on + strand, within HGI48_RS04555 at 955.629 kb on + strand, within HGI48_RS04555 at 955.630 kb on - strand at 955.630 kb on - strand, within HGI48_RS04555 at 955.630 kb on - strand at 955.630 kb on - strand at 955.632 kb on + strand, within HGI48_RS04555 at 955.632 kb on + strand at 955.632 kb on + strand, within HGI48_RS04555 at 955.632 kb on + strand, within HGI48_RS04555 at 955.632 kb on + strand, within HGI48_RS04555 at 955.633 kb on - strand, within HGI48_RS04555 at 955.633 kb on - strand, within HGI48_RS04555 at 955.633 kb on - strand, within HGI48_RS04555 at 955.633 kb on - strand, within HGI48_RS04555 at 955.649 kb on - strand, within HGI48_RS04555 at 955.679 kb on - strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.768 kb on - strand, within HGI48_RS04555 at 955.768 kb on - strand, within HGI48_RS04555 at 955.768 kb on - strand, within HGI48_RS04555 at 955.768 kb on - strand, within HGI48_RS04555 at 955.787 kb on + strand, within HGI48_RS04555 at 956.004 kb on - strand, within HGI48_RS04555 at 956.004 kb on - strand, within HGI48_RS04555 at 956.084 kb on + strand, within HGI48_RS04555 at 956.130 kb on + strand at 956.130 kb on + strand at 956.130 kb on + strand at 956.131 kb on - strand at 956.131 kb on - strand at 956.131 kb on - strand at 956.131 kb on - strand at 956.135 kb on + strand at 956.136 kb on - strand at 956.180 kb on + strand at 956.181 kb on - strand at 956.220 kb on - strand at 956.296 kb on + strand at 956.296 kb on + strand at 956.297 kb on - strand at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.701 kb on - strand, within HGI48_RS04560 at 956.701 kb on - strand, within HGI48_RS04560 at 956.701 kb on - strand at 956.701 kb on - strand, within HGI48_RS04560 at 957.183 kb on + strand at 957.183 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 954,368 + HGI48_RS04550 0.23 -0.0 954,368 + HGI48_RS04550 0.23 -1.8 954,368 + HGI48_RS04550 0.23 +0.3 954,368 + HGI48_RS04550 0.23 -0.5 954,368 + HGI48_RS04550 0.23 -0.3 954,368 + -0.0 954,368 + HGI48_RS04550 0.23 -1.3 954,368 + HGI48_RS04550 0.23 -1.0 954,369 - HGI48_RS04550 0.23 -1.8 954,369 - HGI48_RS04550 0.23 -1.0 954,369 - HGI48_RS04550 0.23 -0.0 954,369 - HGI48_RS04550 0.23 +1.0 954,369 - HGI48_RS04550 0.23 +0.3 954,493 + HGI48_RS04550 0.35 -2.0 954,493 + HGI48_RS04550 0.35 -2.7 954,493 + HGI48_RS04550 0.35 -2.6 954,493 + -0.0 954,494 - HGI48_RS04550 0.35 -0.8 954,494 - HGI48_RS04550 0.35 -3.4 954,542 + HGI48_RS04550 0.40 -1.4 954,562 + HGI48_RS04550 0.42 -1.8 954,562 + HGI48_RS04550 0.42 +0.2 954,563 - HGI48_RS04550 0.43 -2.0 954,563 - HGI48_RS04550 0.43 +1.0 954,836 + HGI48_RS04550 0.71 -2.3 954,836 + HGI48_RS04550 0.71 -1.0 954,837 - HGI48_RS04550 0.71 +0.6 954,837 - HGI48_RS04550 0.71 -2.3 954,837 - HGI48_RS04550 0.71 -2.3 954,837 - HGI48_RS04550 0.71 -1.0 954,837 - HGI48_RS04550 0.71 -1.0 954,837 - HGI48_RS04550 0.71 -2.3 954,837 - HGI48_RS04550 0.71 +0.6 954,837 - HGI48_RS04550 0.71 -3.4 954,846 + HGI48_RS04550 0.72 +0.9 954,937 + HGI48_RS04550 0.81 -1.3 954,937 + HGI48_RS04550 0.81 +0.6 954,937 + HGI48_RS04550 0.81 +0.5 954,938 - HGI48_RS04550 0.81 +0.3 954,938 - HGI48_RS04550 0.81 -1.6 954,938 - +3.6 954,938 - HGI48_RS04550 0.81 -1.6 954,938 - HGI48_RS04550 0.81 +0.2 954,938 - HGI48_RS04550 0.81 -1.0 954,938 - HGI48_RS04550 0.81 -1.3 955,080 + -1.6 955,081 - +1.5 955,091 - +0.6 955,127 + -2.0 955,127 + +1.0 955,181 - -2.2 955,186 + -0.8 955,301 - +0.7 955,301 - -0.0 955,305 - +2.0 955,335 + -3.3 955,392 - -2.0 955,536 + HGI48_RS04555 0.25 +3.8 955,537 - HGI48_RS04555 0.25 -1.8 955,539 + HGI48_RS04555 0.25 -1.3 955,567 - +1.0 955,629 + HGI48_RS04555 0.35 -1.8 955,629 + HGI48_RS04555 0.35 -1.6 955,629 + HGI48_RS04555 0.35 +0.2 955,629 + HGI48_RS04555 0.35 +0.2 955,630 - -0.0 955,630 - HGI48_RS04555 0.35 +2.6 955,630 - -0.6 955,630 - +0.4 955,632 + HGI48_RS04555 0.36 +2.1 955,632 + +1.4 955,632 + HGI48_RS04555 0.36 -3.2 955,632 + HGI48_RS04555 0.36 +1.4 955,632 + HGI48_RS04555 0.36 -0.6 955,633 - HGI48_RS04555 0.36 -1.8 955,633 - HGI48_RS04555 0.36 +1.6 955,633 - HGI48_RS04555 0.36 -0.5 955,633 - HGI48_RS04555 0.36 -1.3 955,649 - HGI48_RS04555 0.37 -1.6 955,679 - HGI48_RS04555 0.41 -3.0 955,767 + HGI48_RS04555 0.50 -0.8 955,767 + HGI48_RS04555 0.50 -2.2 955,767 + HGI48_RS04555 0.50 -2.0 955,767 + HGI48_RS04555 0.50 -0.0 955,767 + HGI48_RS04555 0.50 -1.6 955,767 + HGI48_RS04555 0.50 +2.2 955,767 + HGI48_RS04555 0.50 +0.2 955,768 - HGI48_RS04555 0.51 -1.8 955,768 - HGI48_RS04555 0.51 +1.2 955,768 - HGI48_RS04555 0.51 +0.8 955,768 - HGI48_RS04555 0.51 -2.8 955,787 + HGI48_RS04555 0.53 +0.2 956,004 - HGI48_RS04555 0.77 -2.5 956,004 - HGI48_RS04555 0.77 +2.9 956,084 + HGI48_RS04555 0.86 -1.3 956,130 + +2.3 956,130 + +1.6 956,130 + -1.0 956,131 - -1.6 956,131 - -2.0 956,131 - -1.8 956,131 - +2.4 956,135 + +1.9 956,136 - +1.5 956,180 + -2.6 956,181 - +0.7 956,220 - +1.4 956,296 + +2.5 956,296 + -1.3 956,297 - +0.6 956,700 + HGI48_RS04560 0.43 -1.0 956,700 + HGI48_RS04560 0.43 -1.6 956,700 + HGI48_RS04560 0.43 -1.0 956,700 + -0.6 956,700 + HGI48_RS04560 0.43 +2.1 956,700 + HGI48_RS04560 0.43 -0.6 956,700 + HGI48_RS04560 0.43 +2.9 956,701 - HGI48_RS04560 0.43 -1.3 956,701 - HGI48_RS04560 0.43 -1.8 956,701 - +2.8 956,701 - HGI48_RS04560 0.43 -1.8 957,183 + +0.7 957,183 + +0.5
Or see this region's nucleotide sequence