Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04545

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04535 and HGI48_RS04540 are separated by 2 nucleotidesHGI48_RS04540 and HGI48_RS04545 overlap by 8 nucleotidesHGI48_RS04545 and HGI48_RS04550 are separated by 520 nucleotides HGI48_RS04535: HGI48_RS04535 - MFS transporter, at 950,598 to 951,977 _RS04535 HGI48_RS04540: HGI48_RS04540 - cytochrome c nitrite reductase subunit NrfD, at 951,980 to 952,936 _RS04540 HGI48_RS04545: HGI48_RS04545 - 4Fe-4S dicluster domain-containing protein, at 952,929 to 953,627 _RS04545 HGI48_RS04550: HGI48_RS04550 - alpha/beta hydrolase, at 954,148 to 955,122 _RS04550 Position (kb) 952 953 954Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 951.929 kb on + strandat 951.929 kb on + strandat 951.957 kb on + strandat 952.005 kb on + strandat 952.005 kb on + strandat 952.071 kb on + strandat 952.072 kb on - strandat 952.127 kb on - strand, within HGI48_RS04540at 952.141 kb on + strand, within HGI48_RS04540at 952.142 kb on - strand, within HGI48_RS04540at 952.406 kb on - strand, within HGI48_RS04540at 952.485 kb on - strand, within HGI48_RS04540at 952.485 kb on - strand, within HGI48_RS04540at 952.485 kb on - strand, within HGI48_RS04540at 952.502 kb on + strand, within HGI48_RS04540at 952.502 kb on + strand, within HGI48_RS04540at 952.502 kb on + strand, within HGI48_RS04540at 952.502 kb on + strand, within HGI48_RS04540at 952.502 kb on + strand, within HGI48_RS04540at 952.502 kb on + strand, within HGI48_RS04540at 952.503 kb on - strand, within HGI48_RS04540at 952.503 kb on - strand, within HGI48_RS04540at 952.503 kb on - strand, within HGI48_RS04540at 952.504 kb on + strandat 952.527 kb on - strand, within HGI48_RS04540at 952.538 kb on + strand, within HGI48_RS04540at 952.539 kb on - strand, within HGI48_RS04540at 952.596 kb on + strand, within HGI48_RS04540at 952.596 kb on + strand, within HGI48_RS04540at 952.623 kb on - strand, within HGI48_RS04540at 952.632 kb on + strandat 952.632 kb on + strand, within HGI48_RS04540at 952.632 kb on + strand, within HGI48_RS04540at 952.632 kb on + strand, within HGI48_RS04540at 952.633 kb on - strand, within HGI48_RS04540at 952.633 kb on - strand, within HGI48_RS04540at 952.633 kb on - strand, within HGI48_RS04540at 952.633 kb on - strandat 952.633 kb on - strand, within HGI48_RS04540at 952.633 kb on - strand, within HGI48_RS04540at 952.633 kb on - strand, within HGI48_RS04540at 952.680 kb on + strandat 952.680 kb on + strand, within HGI48_RS04540at 952.695 kb on + strand, within HGI48_RS04540at 952.695 kb on + strand, within HGI48_RS04540at 952.784 kb on - strand, within HGI48_RS04540at 952.798 kb on + strand, within HGI48_RS04540at 952.798 kb on + strand, within HGI48_RS04540at 952.799 kb on - strand, within HGI48_RS04540at 952.799 kb on - strand, within HGI48_RS04540at 952.821 kb on + strand, within HGI48_RS04540at 952.881 kb on + strandat 952.881 kb on + strandat 952.882 kb on - strandat 952.951 kb on + strandat 952.951 kb on + strandat 953.008 kb on + strandat 953.009 kb on - strand, within HGI48_RS04545at 953.012 kb on + strand, within HGI48_RS04545at 953.012 kb on + strand, within HGI48_RS04545at 953.012 kb on + strand, within HGI48_RS04545at 953.012 kb on + strand, within HGI48_RS04545at 953.013 kb on - strand, within HGI48_RS04545at 953.013 kb on - strand, within HGI48_RS04545at 953.013 kb on - strandat 953.013 kb on - strandat 953.039 kb on + strand, within HGI48_RS04545at 953.040 kb on - strand, within HGI48_RS04545at 953.154 kb on - strand, within HGI48_RS04545at 953.154 kb on - strand, within HGI48_RS04545at 953.180 kb on + strand, within HGI48_RS04545at 953.180 kb on + strand, within HGI48_RS04545at 953.181 kb on - strand, within HGI48_RS04545at 953.360 kb on + strand, within HGI48_RS04545at 953.360 kb on + strandat 953.360 kb on + strand, within HGI48_RS04545at 953.360 kb on + strand, within HGI48_RS04545at 953.361 kb on - strandat 953.479 kb on - strand, within HGI48_RS04545at 953.479 kb on - strand, within HGI48_RS04545at 953.493 kb on + strand, within HGI48_RS04545at 953.493 kb on + strand, within HGI48_RS04545at 953.493 kb on + strand, within HGI48_RS04545at 953.494 kb on - strand, within HGI48_RS04545at 953.494 kb on - strand, within HGI48_RS04545at 953.494 kb on - strand, within HGI48_RS04545at 953.494 kb on - strand, within HGI48_RS04545at 953.500 kb on + strand, within HGI48_RS04545at 953.501 kb on - strand, within HGI48_RS04545at 953.501 kb on - strand, within HGI48_RS04545at 953.600 kb on + strandat 953.601 kb on - strandat 953.668 kb on + strandat 953.761 kb on + strandat 953.842 kb on + strandat 954.000 kb on - strandat 954.065 kb on + strandat 954.083 kb on - strandat 954.138 kb on + strandat 954.150 kb on - strandat 954.245 kb on + strandat 954.245 kb on + strandat 954.248 kb on + strand, within HGI48_RS04550at 954.248 kb on + strand, within HGI48_RS04550at 954.248 kb on + strand, within HGI48_RS04550at 954.249 kb on - strandat 954.249 kb on - strand, within HGI48_RS04550at 954.249 kb on - strand, within HGI48_RS04550at 954.368 kb on + strand, within HGI48_RS04550at 954.368 kb on + strand, within HGI48_RS04550at 954.368 kb on + strand, within HGI48_RS04550at 954.368 kb on + strand, within HGI48_RS04550at 954.368 kb on + strand, within HGI48_RS04550at 954.368 kb on + strandat 954.368 kb on + strand, within HGI48_RS04550at 954.368 kb on + strand, within HGI48_RS04550at 954.369 kb on - strand, within HGI48_RS04550at 954.369 kb on - strand, within HGI48_RS04550at 954.369 kb on - strand, within HGI48_RS04550at 954.369 kb on - strand, within HGI48_RS04550at 954.369 kb on - strand, within HGI48_RS04550at 954.493 kb on + strand, within HGI48_RS04550at 954.493 kb on + strand, within HGI48_RS04550at 954.493 kb on + strand, within HGI48_RS04550at 954.493 kb on + strandat 954.494 kb on - strand, within HGI48_RS04550at 954.494 kb on - strand, within HGI48_RS04550at 954.542 kb on + strand, within HGI48_RS04550at 954.562 kb on + strand, within HGI48_RS04550at 954.562 kb on + strand, within HGI48_RS04550at 954.563 kb on - strand, within HGI48_RS04550at 954.563 kb on - strand, within HGI48_RS04550

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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951,929 + -2.3
951,929 + -1.3
951,957 + -1.6
952,005 + +0.2
952,005 + -1.6
952,071 + -2.6
952,072 - +1.0
952,127 - HGI48_RS04540 0.15 +2.1
952,141 + HGI48_RS04540 0.17 -3.2
952,142 - HGI48_RS04540 0.17 -1.8
952,406 - HGI48_RS04540 0.45 -1.0
952,485 - HGI48_RS04540 0.53 +1.6
952,485 - HGI48_RS04540 0.53 +1.4
952,485 - HGI48_RS04540 0.53 +0.1
952,502 + HGI48_RS04540 0.55 +0.2
952,502 + HGI48_RS04540 0.55 -2.3
952,502 + HGI48_RS04540 0.55 -0.4
952,502 + HGI48_RS04540 0.55 -1.6
952,502 + HGI48_RS04540 0.55 -1.6
952,502 + HGI48_RS04540 0.55 +2.3
952,503 - HGI48_RS04540 0.55 +2.4
952,503 - HGI48_RS04540 0.55 +0.8
952,503 - HGI48_RS04540 0.55 -3.1
952,504 + +2.6
952,527 - HGI48_RS04540 0.57 -1.0
952,538 + HGI48_RS04540 0.58 -2.5
952,539 - HGI48_RS04540 0.58 +0.5
952,596 + HGI48_RS04540 0.64 -2.7
952,596 + HGI48_RS04540 0.64 -3.2
952,623 - HGI48_RS04540 0.67 -2.5
952,632 + +2.6
952,632 + HGI48_RS04540 0.68 +0.4
952,632 + HGI48_RS04540 0.68 -1.8
952,632 + HGI48_RS04540 0.68 +2.2
952,633 - HGI48_RS04540 0.68 +2.2
952,633 - HGI48_RS04540 0.68 -2.0
952,633 - HGI48_RS04540 0.68 -0.3
952,633 - -0.6
952,633 - HGI48_RS04540 0.68 -1.0
952,633 - HGI48_RS04540 0.68 -2.6
952,633 - HGI48_RS04540 0.68 -1.6
952,680 + -0.0
952,680 + HGI48_RS04540 0.73 -3.0
952,695 + HGI48_RS04540 0.75 -1.8
952,695 + HGI48_RS04540 0.75 +1.0
952,784 - HGI48_RS04540 0.84 +0.1
952,798 + HGI48_RS04540 0.85 -0.1
952,798 + HGI48_RS04540 0.85 +2.0
952,799 - HGI48_RS04540 0.86 -2.5
952,799 - HGI48_RS04540 0.86 -0.0
952,821 + HGI48_RS04540 0.88 +2.2
952,881 + +1.2
952,881 + +1.3
952,882 - -3.6
952,951 + +0.6
952,951 + +1.6
953,008 + -0.6
953,009 - HGI48_RS04545 0.11 -2.2
953,012 + HGI48_RS04545 0.12 +1.8
953,012 + HGI48_RS04545 0.12 -2.7
953,012 + HGI48_RS04545 0.12 -1.6
953,012 + HGI48_RS04545 0.12 -0.2
953,013 - HGI48_RS04545 0.12 +0.0
953,013 - HGI48_RS04545 0.12 -1.6
953,013 - -0.6
953,013 - +3.0
953,039 + HGI48_RS04545 0.16 +0.6
953,040 - HGI48_RS04545 0.16 -2.0
953,154 - HGI48_RS04545 0.32 +0.9
953,154 - HGI48_RS04545 0.32 -1.0
953,180 + HGI48_RS04545 0.36 -1.0
953,180 + HGI48_RS04545 0.36 +0.5
953,181 - HGI48_RS04545 0.36 -1.8
953,360 + HGI48_RS04545 0.62 +1.0
953,360 + -0.0
953,360 + HGI48_RS04545 0.62 -1.3
953,360 + HGI48_RS04545 0.62 +2.1
953,361 - +2.6
953,479 - HGI48_RS04545 0.79 -1.0
953,479 - HGI48_RS04545 0.79 +3.1
953,493 + HGI48_RS04545 0.81 -1.0
953,493 + HGI48_RS04545 0.81 +0.5
953,493 + HGI48_RS04545 0.81 -1.0
953,494 - HGI48_RS04545 0.81 -2.5
953,494 - HGI48_RS04545 0.81 -1.6
953,494 - HGI48_RS04545 0.81 +0.5
953,494 - HGI48_RS04545 0.81 -2.0
953,500 + HGI48_RS04545 0.82 -1.2
953,501 - HGI48_RS04545 0.82 -3.0
953,501 - HGI48_RS04545 0.82 +3.1
953,600 + +2.0
953,601 - -2.0
953,668 + -3.0
953,761 + -0.6
953,842 + +1.7
954,000 - -0.5
954,065 + +2.8
954,083 - -0.9
954,138 + -0.6
954,150 - +2.7
954,245 + +1.4
954,245 + -2.2
954,248 + HGI48_RS04550 0.10 +2.1
954,248 + HGI48_RS04550 0.10 -2.3
954,248 + HGI48_RS04550 0.10 -1.8
954,249 - -0.6
954,249 - HGI48_RS04550 0.10 +0.8
954,249 - HGI48_RS04550 0.10 -2.2
954,368 + HGI48_RS04550 0.23 -0.0
954,368 + HGI48_RS04550 0.23 -1.8
954,368 + HGI48_RS04550 0.23 +0.3
954,368 + HGI48_RS04550 0.23 -0.5
954,368 + HGI48_RS04550 0.23 -0.3
954,368 + -0.0
954,368 + HGI48_RS04550 0.23 -1.3
954,368 + HGI48_RS04550 0.23 -1.0
954,369 - HGI48_RS04550 0.23 -1.8
954,369 - HGI48_RS04550 0.23 -1.0
954,369 - HGI48_RS04550 0.23 -0.0
954,369 - HGI48_RS04550 0.23 +1.0
954,369 - HGI48_RS04550 0.23 +0.3
954,493 + HGI48_RS04550 0.35 -2.0
954,493 + HGI48_RS04550 0.35 -2.7
954,493 + HGI48_RS04550 0.35 -2.6
954,493 + -0.0
954,494 - HGI48_RS04550 0.35 -0.8
954,494 - HGI48_RS04550 0.35 -3.4
954,542 + HGI48_RS04550 0.40 -1.4
954,562 + HGI48_RS04550 0.42 -1.8
954,562 + HGI48_RS04550 0.42 +0.2
954,563 - HGI48_RS04550 0.43 -2.0
954,563 - HGI48_RS04550 0.43 +1.0

Or see this region's nucleotide sequence