Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02620 and HGI48_RS02625 overlap by 8 nucleotides HGI48_RS02625 and HGI48_RS02630 are separated by 9 nucleotides HGI48_RS02630 and HGI48_RS02635 are separated by 1 nucleotides
HGI48_RS02620: HGI48_RS02620 - capsular biosynthesis protein, at 568,395 to 569,777
_RS02620
HGI48_RS02625: HGI48_RS02625 - glycosyltransferase, at 569,770 to 570,759
_RS02625
HGI48_RS02630: HGI48_RS02630 - glycosyltransferase family 4 protein, at 570,769 to 571,980
_RS02630
HGI48_RS02635: HGI48_RS02635 - glycosyltransferase family 4 protein, at 571,982 to 573,094
_RS02635
Position (kb) 570
571
572 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 569.800 kb on - strand at 569.802 kb on + strand at 569.838 kb on + strand at 569.862 kb on + strand at 569.877 kb on + strand, within HGI48_RS02625 at 570.004 kb on + strand, within HGI48_RS02625 at 570.004 kb on + strand, within HGI48_RS02625 at 570.004 kb on + strand, within HGI48_RS02625 at 570.005 kb on - strand at 570.010 kb on + strand, within HGI48_RS02625 at 570.010 kb on + strand, within HGI48_RS02625 at 570.010 kb on + strand, within HGI48_RS02625 at 570.011 kb on - strand, within HGI48_RS02625 at 570.132 kb on - strand, within HGI48_RS02625 at 570.154 kb on + strand, within HGI48_RS02625 at 570.154 kb on + strand, within HGI48_RS02625 at 570.154 kb on + strand, within HGI48_RS02625 at 570.155 kb on - strand, within HGI48_RS02625 at 570.162 kb on + strand, within HGI48_RS02625 at 570.162 kb on + strand, within HGI48_RS02625 at 570.163 kb on - strand, within HGI48_RS02625 at 570.163 kb on - strand, within HGI48_RS02625 at 570.163 kb on - strand, within HGI48_RS02625 at 570.163 kb on - strand, within HGI48_RS02625 at 570.180 kb on + strand at 570.180 kb on + strand, within HGI48_RS02625 at 570.180 kb on + strand, within HGI48_RS02625 at 570.180 kb on + strand, within HGI48_RS02625 at 570.181 kb on - strand, within HGI48_RS02625 at 570.181 kb on - strand, within HGI48_RS02625 at 570.181 kb on - strand, within HGI48_RS02625 at 570.191 kb on + strand, within HGI48_RS02625 at 570.191 kb on + strand, within HGI48_RS02625 at 570.192 kb on - strand, within HGI48_RS02625 at 570.192 kb on - strand, within HGI48_RS02625 at 570.192 kb on - strand, within HGI48_RS02625 at 570.233 kb on + strand at 570.233 kb on + strand, within HGI48_RS02625 at 570.234 kb on - strand, within HGI48_RS02625 at 570.235 kb on + strand, within HGI48_RS02625 at 570.236 kb on - strand, within HGI48_RS02625 at 570.265 kb on + strand, within HGI48_RS02625 at 570.265 kb on + strand, within HGI48_RS02625 at 570.266 kb on - strand, within HGI48_RS02625 at 570.266 kb on - strand, within HGI48_RS02625 at 570.337 kb on - strand, within HGI48_RS02625 at 570.356 kb on + strand, within HGI48_RS02625 at 570.357 kb on - strand, within HGI48_RS02625 at 570.357 kb on - strand, within HGI48_RS02625 at 570.361 kb on + strand, within HGI48_RS02625 at 570.361 kb on + strand, within HGI48_RS02625 at 570.372 kb on + strand, within HGI48_RS02625 at 570.373 kb on - strand, within HGI48_RS02625 at 570.395 kb on - strand, within HGI48_RS02625 at 570.396 kb on + strand, within HGI48_RS02625 at 570.396 kb on + strand, within HGI48_RS02625 at 570.410 kb on - strand, within HGI48_RS02625 at 570.453 kb on - strand at 570.475 kb on + strand, within HGI48_RS02625 at 570.476 kb on - strand, within HGI48_RS02625 at 570.615 kb on - strand, within HGI48_RS02625 at 570.674 kb on + strand at 570.675 kb on - strand at 570.675 kb on - strand at 570.675 kb on - strand at 570.747 kb on + strand at 570.747 kb on + strand at 570.748 kb on - strand at 570.897 kb on + strand, within HGI48_RS02630 at 570.922 kb on + strand, within HGI48_RS02630 at 570.923 kb on - strand, within HGI48_RS02630 at 570.958 kb on - strand, within HGI48_RS02630 at 571.000 kb on - strand, within HGI48_RS02630 at 571.014 kb on + strand, within HGI48_RS02630 at 571.071 kb on + strand, within HGI48_RS02630 at 571.071 kb on + strand at 571.075 kb on + strand, within HGI48_RS02630 at 571.076 kb on - strand, within HGI48_RS02630 at 571.076 kb on - strand, within HGI48_RS02630 at 571.150 kb on + strand, within HGI48_RS02630 at 571.150 kb on + strand, within HGI48_RS02630 at 571.150 kb on + strand, within HGI48_RS02630 at 571.171 kb on + strand, within HGI48_RS02630 at 571.172 kb on - strand, within HGI48_RS02630 at 571.223 kb on + strand, within HGI48_RS02630 at 571.227 kb on + strand, within HGI48_RS02630 at 571.227 kb on + strand, within HGI48_RS02630 at 571.227 kb on + strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.236 kb on + strand, within HGI48_RS02630 at 571.237 kb on - strand at 571.237 kb on - strand, within HGI48_RS02630 at 571.240 kb on + strand, within HGI48_RS02630 at 571.240 kb on + strand, within HGI48_RS02630 at 571.305 kb on + strand, within HGI48_RS02630 at 571.305 kb on + strand, within HGI48_RS02630 at 571.305 kb on + strand, within HGI48_RS02630 at 571.306 kb on - strand at 571.318 kb on + strand at 571.370 kb on + strand at 571.371 kb on - strand, within HGI48_RS02630 at 571.395 kb on + strand at 571.459 kb on + strand at 571.470 kb on + strand, within HGI48_RS02630 at 571.471 kb on - strand at 571.653 kb on + strand, within HGI48_RS02630 at 571.688 kb on - strand, within HGI48_RS02630 at 571.691 kb on - strand, within HGI48_RS02630 at 571.696 kb on - strand, within HGI48_RS02630 at 571.790 kb on + strand, within HGI48_RS02630 at 571.790 kb on + strand, within HGI48_RS02630 at 571.887 kb on - strand at 571.922 kb on + strand at 571.923 kb on - strand at 571.923 kb on - strand at 571.923 kb on - strand at 571.923 kb on - strand at 571.927 kb on - strand at 571.927 kb on - strand at 571.943 kb on + strand at 572.062 kb on - strand at 572.075 kb on - strand at 572.120 kb on + strand, within HGI48_RS02635 at 572.125 kb on + strand, within HGI48_RS02635 at 572.126 kb on - strand, within HGI48_RS02635 at 572.202 kb on + strand at 572.202 kb on + strand, within HGI48_RS02635 at 572.203 kb on - strand, within HGI48_RS02635 at 572.227 kb on + strand, within HGI48_RS02635 at 572.227 kb on + strand, within HGI48_RS02635 at 572.228 kb on - strand, within HGI48_RS02635 at 572.269 kb on + strand, within HGI48_RS02635 at 572.305 kb on - strand, within HGI48_RS02635 at 572.327 kb on - strand, within HGI48_RS02635 at 572.345 kb on + strand, within HGI48_RS02635 at 572.346 kb on - strand, within HGI48_RS02635 at 572.414 kb on + strand, within HGI48_RS02635 at 572.471 kb on + strand, within HGI48_RS02635 at 572.471 kb on + strand, within HGI48_RS02635 at 572.494 kb on + strand, within HGI48_RS02635 at 572.494 kb on + strand, within HGI48_RS02635 at 572.495 kb on - strand, within HGI48_RS02635 at 572.495 kb on - strand at 572.498 kb on + strand, within HGI48_RS02635 at 572.498 kb on + strand, within HGI48_RS02635 at 572.498 kb on + strand, within HGI48_RS02635 at 572.498 kb on + strand at 572.499 kb on - strand, within HGI48_RS02635 at 572.500 kb on + strand, within HGI48_RS02635 at 572.582 kb on + strand, within HGI48_RS02635 at 572.582 kb on + strand, within HGI48_RS02635 at 572.582 kb on + strand, within HGI48_RS02635 at 572.582 kb on + strand, within HGI48_RS02635 at 572.583 kb on - strand, within HGI48_RS02635 at 572.583 kb on - strand, within HGI48_RS02635 at 572.583 kb on - strand at 572.587 kb on - strand, within HGI48_RS02635 at 572.587 kb on - strand, within HGI48_RS02635 at 572.587 kb on - strand, within HGI48_RS02635 at 572.587 kb on - strand, within HGI48_RS02635 at 572.587 kb on - strand, within HGI48_RS02635 at 572.705 kb on + strand, within HGI48_RS02635 at 572.707 kb on + strand, within HGI48_RS02635 at 572.707 kb on + strand, within HGI48_RS02635 at 572.707 kb on + strand, within HGI48_RS02635 at 572.707 kb on + strand, within HGI48_RS02635 at 572.708 kb on - strand, within HGI48_RS02635 at 572.708 kb on - strand, within HGI48_RS02635 at 572.782 kb on - strand, within HGI48_RS02635 at 572.782 kb on - strand, within HGI48_RS02635 at 572.782 kb on - strand, within HGI48_RS02635 at 572.803 kb on + strand, within HGI48_RS02635 at 572.804 kb on - strand, within HGI48_RS02635 at 572.809 kb on - strand, within HGI48_RS02635 at 572.809 kb on - strand at 572.809 kb on - strand, within HGI48_RS02635 at 572.809 kb on - strand, within HGI48_RS02635 at 572.809 kb on - strand, within HGI48_RS02635 at 572.825 kb on + strand, within HGI48_RS02635 at 572.825 kb on + strand, within HGI48_RS02635 at 572.825 kb on + strand, within HGI48_RS02635 at 572.826 kb on - strand, within HGI48_RS02635 at 572.893 kb on + strand, within HGI48_RS02635 at 572.894 kb on - strand, within HGI48_RS02635 at 572.894 kb on - strand at 572.933 kb on + strand, within HGI48_RS02635 at 572.934 kb on - strand, within HGI48_RS02635 at 572.934 kb on - strand, within HGI48_RS02635 at 572.938 kb on + strand, within HGI48_RS02635 at 572.938 kb on + strand, within HGI48_RS02635 at 572.938 kb on + strand, within HGI48_RS02635 at 572.939 kb on - strand, within HGI48_RS02635 at 572.939 kb on - strand, within HGI48_RS02635 at 572.939 kb on - strand, within HGI48_RS02635
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 569,800 - -0.5 569,802 + -0.9 569,838 + +0.1 569,862 + -0.5 569,877 + HGI48_RS02625 0.11 -2.0 570,004 + HGI48_RS02625 0.24 -2.0 570,004 + HGI48_RS02625 0.24 -3.1 570,004 + HGI48_RS02625 0.24 -1.2 570,005 - -0.5 570,010 + HGI48_RS02625 0.24 -1.9 570,010 + HGI48_RS02625 0.24 -1.5 570,010 + HGI48_RS02625 0.24 -1.7 570,011 - HGI48_RS02625 0.24 -1.2 570,132 - HGI48_RS02625 0.37 -1.0 570,154 + HGI48_RS02625 0.39 -0.9 570,154 + HGI48_RS02625 0.39 -2.3 570,154 + HGI48_RS02625 0.39 -1.5 570,155 - HGI48_RS02625 0.39 +1.5 570,162 + HGI48_RS02625 0.40 +1.1 570,162 + HGI48_RS02625 0.40 -1.2 570,163 - HGI48_RS02625 0.40 -0.9 570,163 - HGI48_RS02625 0.40 +1.1 570,163 - HGI48_RS02625 0.40 +0.2 570,163 - HGI48_RS02625 0.40 -2.6 570,180 + -0.5 570,180 + HGI48_RS02625 0.41 +3.5 570,180 + HGI48_RS02625 0.41 +0.6 570,180 + HGI48_RS02625 0.41 -0.5 570,181 - HGI48_RS02625 0.42 +1.1 570,181 - HGI48_RS02625 0.42 -3.5 570,181 - HGI48_RS02625 0.42 -1.7 570,191 + HGI48_RS02625 0.43 -1.7 570,191 + HGI48_RS02625 0.43 +0.5 570,192 - HGI48_RS02625 0.43 +1.6 570,192 - HGI48_RS02625 0.43 +1.3 570,192 - HGI48_RS02625 0.43 +1.0 570,233 + +3.3 570,233 + HGI48_RS02625 0.47 -1.5 570,234 - HGI48_RS02625 0.47 +1.5 570,235 + HGI48_RS02625 0.47 +1.7 570,236 - HGI48_RS02625 0.47 +0.3 570,265 + HGI48_RS02625 0.50 -1.3 570,265 + HGI48_RS02625 0.50 +0.5 570,266 - HGI48_RS02625 0.50 +1.0 570,266 - HGI48_RS02625 0.50 -0.0 570,337 - HGI48_RS02625 0.57 +1.4 570,356 + HGI48_RS02625 0.59 -1.2 570,357 - HGI48_RS02625 0.59 -0.9 570,357 - HGI48_RS02625 0.59 +1.1 570,361 + HGI48_RS02625 0.60 -3.0 570,361 + HGI48_RS02625 0.60 +1.7 570,372 + HGI48_RS02625 0.61 +0.7 570,373 - HGI48_RS02625 0.61 -1.2 570,395 - HGI48_RS02625 0.63 +2.4 570,396 + HGI48_RS02625 0.63 +0.9 570,396 + HGI48_RS02625 0.63 +2.1 570,410 - HGI48_RS02625 0.65 -2.6 570,453 - +0.1 570,475 + HGI48_RS02625 0.71 +1.3 570,476 - HGI48_RS02625 0.71 +3.4 570,615 - HGI48_RS02625 0.85 -0.9 570,674 + -2.2 570,675 - -2.2 570,675 - -0.1 570,675 - +1.5 570,747 + +1.9 570,747 + +3.9 570,748 - +2.2 570,897 + HGI48_RS02630 0.11 -0.9 570,922 + HGI48_RS02630 0.13 -1.2 570,923 - HGI48_RS02630 0.13 -2.2 570,958 - HGI48_RS02630 0.16 +1.4 571,000 - HGI48_RS02630 0.19 -1.9 571,014 + HGI48_RS02630 0.20 -1.5 571,071 + HGI48_RS02630 0.25 -1.9 571,071 + -0.5 571,075 + HGI48_RS02630 0.25 -2.6 571,076 - HGI48_RS02630 0.25 +1.9 571,076 - HGI48_RS02630 0.25 -0.9 571,150 + HGI48_RS02630 0.31 +0.1 571,150 + HGI48_RS02630 0.31 -2.6 571,150 + HGI48_RS02630 0.31 +2.0 571,171 + HGI48_RS02630 0.33 -0.9 571,172 - HGI48_RS02630 0.33 -2.0 571,223 + HGI48_RS02630 0.37 -0.6 571,227 + HGI48_RS02630 0.38 -1.2 571,227 + HGI48_RS02630 0.38 +1.1 571,227 + HGI48_RS02630 0.38 -2.0 571,228 - HGI48_RS02630 0.38 +0.0 571,228 - HGI48_RS02630 0.38 -1.5 571,228 - HGI48_RS02630 0.38 +2.4 571,228 - HGI48_RS02630 0.38 -0.9 571,228 - HGI48_RS02630 0.38 +1.5 571,236 + HGI48_RS02630 0.39 -0.3 571,237 - -0.5 571,237 - HGI48_RS02630 0.39 -2.2 571,240 + HGI48_RS02630 0.39 +3.2 571,240 + HGI48_RS02630 0.39 -1.5 571,305 + HGI48_RS02630 0.44 -1.9 571,305 + HGI48_RS02630 0.44 +1.9 571,305 + HGI48_RS02630 0.44 +0.9 571,306 - -0.5 571,318 + -0.5 571,370 + -0.5 571,371 - HGI48_RS02630 0.50 -2.2 571,395 + -0.5 571,459 + +1.5 571,470 + HGI48_RS02630 0.58 -1.7 571,471 - +0.1 571,653 + HGI48_RS02630 0.73 +1.4 571,688 - HGI48_RS02630 0.76 +1.4 571,691 - HGI48_RS02630 0.76 +1.0 571,696 - HGI48_RS02630 0.76 -1.9 571,790 + HGI48_RS02630 0.84 -0.4 571,790 + HGI48_RS02630 0.84 +1.9 571,887 - +0.7 571,922 + +0.1 571,923 - +2.0 571,923 - +1.7 571,923 - -1.2 571,923 - +0.1 571,927 - +0.6 571,927 - +2.5 571,943 + -0.9 572,062 - +0.2 572,075 - -1.2 572,120 + HGI48_RS02635 0.12 +2.6 572,125 + HGI48_RS02635 0.13 +2.7 572,126 - HGI48_RS02635 0.13 -1.9 572,202 + +2.9 572,202 + HGI48_RS02635 0.20 -0.9 572,203 - HGI48_RS02635 0.20 +1.1 572,227 + HGI48_RS02635 0.22 +0.9 572,227 + HGI48_RS02635 0.22 -2.2 572,228 - HGI48_RS02635 0.22 +0.4 572,269 + HGI48_RS02635 0.26 +0.6 572,305 - HGI48_RS02635 0.29 -1.5 572,327 - HGI48_RS02635 0.31 +0.6 572,345 + HGI48_RS02635 0.33 -0.9 572,346 - HGI48_RS02635 0.33 -2.3 572,414 + HGI48_RS02635 0.39 -1.2 572,471 + HGI48_RS02635 0.44 -1.7 572,471 + HGI48_RS02635 0.44 +1.7 572,494 + HGI48_RS02635 0.46 -0.0 572,494 + HGI48_RS02635 0.46 +2.3 572,495 - HGI48_RS02635 0.46 +2.8 572,495 - +0.1 572,498 + HGI48_RS02635 0.46 -1.5 572,498 + HGI48_RS02635 0.46 +1.8 572,498 + HGI48_RS02635 0.46 -1.5 572,498 + +1.1 572,499 - HGI48_RS02635 0.46 -0.9 572,500 + HGI48_RS02635 0.47 -1.2 572,582 + HGI48_RS02635 0.54 -1.2 572,582 + HGI48_RS02635 0.54 -2.7 572,582 + HGI48_RS02635 0.54 -3.3 572,582 + HGI48_RS02635 0.54 -2.3 572,583 - HGI48_RS02635 0.54 +2.8 572,583 - HGI48_RS02635 0.54 +0.8 572,583 - +2.3 572,587 - HGI48_RS02635 0.54 -1.7 572,587 - HGI48_RS02635 0.54 -2.3 572,587 - HGI48_RS02635 0.54 -0.9 572,587 - HGI48_RS02635 0.54 -1.9 572,587 - HGI48_RS02635 0.54 -1.5 572,705 + HGI48_RS02635 0.65 -1.2 572,707 + HGI48_RS02635 0.65 -1.2 572,707 + HGI48_RS02635 0.65 -1.5 572,707 + HGI48_RS02635 0.65 -1.5 572,707 + HGI48_RS02635 0.65 +1.9 572,708 - HGI48_RS02635 0.65 -0.6 572,708 - HGI48_RS02635 0.65 -2.2 572,782 - HGI48_RS02635 0.72 +1.1 572,782 - HGI48_RS02635 0.72 -0.4 572,782 - HGI48_RS02635 0.72 -0.9 572,803 + HGI48_RS02635 0.74 -2.8 572,804 - HGI48_RS02635 0.74 +1.6 572,809 - HGI48_RS02635 0.74 -1.2 572,809 - -0.5 572,809 - HGI48_RS02635 0.74 -0.7 572,809 - HGI48_RS02635 0.74 -1.9 572,809 - HGI48_RS02635 0.74 +2.1 572,825 + HGI48_RS02635 0.76 -1.2 572,825 + HGI48_RS02635 0.76 -1.7 572,825 + HGI48_RS02635 0.76 -1.5 572,826 - HGI48_RS02635 0.76 -1.7 572,893 + HGI48_RS02635 0.82 +2.4 572,894 - HGI48_RS02635 0.82 +0.5 572,894 - +3.3 572,933 + HGI48_RS02635 0.85 -2.0 572,934 - HGI48_RS02635 0.86 -0.4 572,934 - HGI48_RS02635 0.86 -3.9 572,938 + HGI48_RS02635 0.86 -0.1 572,938 + HGI48_RS02635 0.86 -1.2 572,938 + HGI48_RS02635 0.86 +2.0 572,939 - HGI48_RS02635 0.86 +2.8 572,939 - HGI48_RS02635 0.86 +0.7 572,939 - HGI48_RS02635 0.86 +0.9
Or see this region's nucleotide sequence