Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02585

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02575 and HGI48_RS02580 are separated by 0 nucleotidesHGI48_RS02580 and HGI48_RS02585 are separated by 27 nucleotidesHGI48_RS02585 and HGI48_RS02590 are separated by 277 nucleotides HGI48_RS02575: HGI48_RS02575 - heavy metal translocating P-type ATPase, at 555,985 to 558,390 _RS02575 HGI48_RS02580: HGI48_RS02580 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 558,391 to 558,822 _RS02580 HGI48_RS02585: HGI48_RS02585 - LacI family DNA-binding transcriptional regulator, at 558,850 to 559,872 _RS02585 HGI48_RS02590: HGI48_RS02590 - L-talarate/galactarate dehydratase, at 560,150 to 561,349 _RS02590 Position (kb) 558 559 560Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 557.957 kb on + strand, within HGI48_RS02575at 558.349 kb on + strandat 558.349 kb on + strandat 558.349 kb on + strandat 558.350 kb on - strandat 558.363 kb on + strandat 558.370 kb on + strandat 558.372 kb on + strandat 558.373 kb on - strandat 558.464 kb on + strand, within HGI48_RS02580at 558.464 kb on + strand, within HGI48_RS02580at 558.465 kb on - strandat 558.465 kb on - strand, within HGI48_RS02580at 558.484 kb on - strandat 558.496 kb on + strand, within HGI48_RS02580at 558.505 kb on + strand, within HGI48_RS02580at 558.505 kb on + strand, within HGI48_RS02580at 558.506 kb on - strand, within HGI48_RS02580at 558.538 kb on - strandat 558.683 kb on + strandat 558.683 kb on + strand, within HGI48_RS02580at 558.683 kb on + strandat 558.684 kb on - strand, within HGI48_RS02580at 558.684 kb on - strand, within HGI48_RS02580at 558.684 kb on - strand, within HGI48_RS02580at 558.807 kb on + strandat 558.981 kb on + strand, within HGI48_RS02585at 558.981 kb on + strand, within HGI48_RS02585at 558.982 kb on - strand, within HGI48_RS02585at 558.982 kb on - strandat 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strandat 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strandat 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strandat 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.372 kb on - strand, within HGI48_RS02585at 559.535 kb on + strand, within HGI48_RS02585at 559.653 kb on + strandat 559.653 kb on + strand, within HGI48_RS02585at 559.654 kb on - strandat 559.892 kb on + strandat 559.892 kb on + strandat 559.892 kb on + strandat 559.893 kb on - strandat 559.893 kb on - strandat 559.893 kb on - strandat 559.893 kb on - strandat 559.893 kb on - strandat 559.985 kb on + strandat 559.985 kb on + strandat 560.070 kb on + strandat 560.070 kb on + strandat 560.071 kb on - strandat 560.184 kb on - strandat 560.230 kb on + strandat 560.296 kb on - strand, within HGI48_RS02590at 560.296 kb on - strand, within HGI48_RS02590at 560.336 kb on - strand, within HGI48_RS02590at 560.336 kb on - strand, within HGI48_RS02590at 560.338 kb on + strand, within HGI48_RS02590at 560.338 kb on + strand, within HGI48_RS02590at 560.339 kb on - strand, within HGI48_RS02590at 560.339 kb on - strand, within HGI48_RS02590at 560.339 kb on - strand, within HGI48_RS02590at 560.388 kb on - strand, within HGI48_RS02590at 560.417 kb on + strand, within HGI48_RS02590at 560.417 kb on + strand, within HGI48_RS02590at 560.417 kb on + strandat 560.417 kb on + strand, within HGI48_RS02590at 560.418 kb on - strand, within HGI48_RS02590at 560.418 kb on - strand, within HGI48_RS02590at 560.418 kb on - strand, within HGI48_RS02590at 560.418 kb on - strand, within HGI48_RS02590at 560.483 kb on + strand, within HGI48_RS02590at 560.581 kb on + strand, within HGI48_RS02590at 560.582 kb on - strand, within HGI48_RS02590at 560.582 kb on - strand, within HGI48_RS02590at 560.610 kb on + strand, within HGI48_RS02590at 560.642 kb on + strand, within HGI48_RS02590at 560.642 kb on + strand, within HGI48_RS02590at 560.643 kb on - strand, within HGI48_RS02590at 560.643 kb on - strand, within HGI48_RS02590at 560.643 kb on - strand, within HGI48_RS02590at 560.643 kb on - strand, within HGI48_RS02590at 560.643 kb on - strandat 560.643 kb on - strand, within HGI48_RS02590at 560.685 kb on + strand, within HGI48_RS02590

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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557,957 + HGI48_RS02575 0.82 +0.7
558,349 + +0.9
558,349 + -1.9
558,349 + +0.3
558,350 - +0.1
558,363 + -0.9
558,370 + -1.7
558,372 + -2.7
558,373 - +0.4
558,464 + HGI48_RS02580 0.17 -2.2
558,464 + HGI48_RS02580 0.17 -1.7
558,465 - -0.5
558,465 - HGI48_RS02580 0.17 +0.5
558,484 - +2.3
558,496 + HGI48_RS02580 0.24 +0.1
558,505 + HGI48_RS02580 0.26 -3.8
558,505 + HGI48_RS02580 0.26 +1.9
558,506 - HGI48_RS02580 0.27 +0.7
558,538 - +2.3
558,683 + +0.1
558,683 + HGI48_RS02580 0.68 -2.4
558,683 + +0.1
558,684 - HGI48_RS02580 0.68 -1.2
558,684 - HGI48_RS02580 0.68 -2.7
558,684 - HGI48_RS02580 0.68 -1.2
558,807 + -1.2
558,981 + HGI48_RS02585 0.13 +4.2
558,981 + HGI48_RS02585 0.13 -1.7
558,982 - HGI48_RS02585 0.13 +0.7
558,982 - +0.1
559,322 + HGI48_RS02585 0.46 -0.1
559,322 + HGI48_RS02585 0.46 +1.4
559,322 + HGI48_RS02585 0.46 -2.5
559,322 + -0.5
559,322 + HGI48_RS02585 0.46 -1.7
559,322 + HGI48_RS02585 0.46 -2.2
559,322 + -0.5
559,322 + HGI48_RS02585 0.46 -2.7
559,322 + HGI48_RS02585 0.46 -0.9
559,322 + HGI48_RS02585 0.46 -1.2
559,322 + +2.3
559,323 - HGI48_RS02585 0.46 -0.9
559,323 - HGI48_RS02585 0.46 +1.4
559,323 - HGI48_RS02585 0.46 +2.7
559,323 - HGI48_RS02585 0.46 -0.6
559,323 - HGI48_RS02585 0.46 +1.9
559,323 - HGI48_RS02585 0.46 -1.5
559,323 - HGI48_RS02585 0.46 -0.6
559,323 - HGI48_RS02585 0.46 -0.5
559,372 - HGI48_RS02585 0.51 -1.9
559,535 + HGI48_RS02585 0.67 +0.6
559,653 + +0.1
559,653 + HGI48_RS02585 0.78 -0.9
559,654 - +0.1
559,892 + +0.6
559,892 + -1.2
559,892 + +0.4
559,893 - +2.3
559,893 - +0.2
559,893 - -3.0
559,893 - +1.3
559,893 - -1.2
559,985 + -2.0
559,985 + -2.2
560,070 + +2.4
560,070 + +0.4
560,071 - +1.4
560,184 - -0.5
560,230 + +2.3
560,296 - HGI48_RS02590 0.12 -1.2
560,296 - HGI48_RS02590 0.12 -1.5
560,336 - HGI48_RS02590 0.15 +0.5
560,336 - HGI48_RS02590 0.15 -1.2
560,338 + HGI48_RS02590 0.16 +2.9
560,338 + HGI48_RS02590 0.16 +2.4
560,339 - HGI48_RS02590 0.16 -3.0
560,339 - HGI48_RS02590 0.16 +2.8
560,339 - HGI48_RS02590 0.16 -2.3
560,388 - HGI48_RS02590 0.20 -2.5
560,417 + HGI48_RS02590 0.22 +1.3
560,417 + HGI48_RS02590 0.22 -1.2
560,417 + +3.2
560,417 + HGI48_RS02590 0.22 -0.2
560,418 - HGI48_RS02590 0.22 +0.2
560,418 - HGI48_RS02590 0.22 +1.3
560,418 - HGI48_RS02590 0.22 -1.5
560,418 - HGI48_RS02590 0.22 -1.2
560,483 + HGI48_RS02590 0.28 +1.6
560,581 + HGI48_RS02590 0.36 -0.9
560,582 - HGI48_RS02590 0.36 +0.8
560,582 - HGI48_RS02590 0.36 -2.6
560,610 + HGI48_RS02590 0.38 +1.7
560,642 + HGI48_RS02590 0.41 +2.3
560,642 + HGI48_RS02590 0.41 +1.8
560,643 - HGI48_RS02590 0.41 -1.5
560,643 - HGI48_RS02590 0.41 -1.9
560,643 - HGI48_RS02590 0.41 -1.9
560,643 - HGI48_RS02590 0.41 -2.3
560,643 - +0.1
560,643 - HGI48_RS02590 0.41 +1.4
560,685 + HGI48_RS02590 0.45 +2.5

Or see this region's nucleotide sequence