Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01835

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01830 and HGI48_RS01835 are separated by 95 nucleotidesHGI48_RS01835 and HGI48_RS01840 are separated by 10 nucleotides HGI48_RS01830: HGI48_RS01830 - homocysteine S-methyltransferase family protein, at 406,682 to 407,590 _RS01830 HGI48_RS01835: HGI48_RS01835 - ABC transporter substrate-binding protein, at 407,686 to 409,227 _RS01835 HGI48_RS01840: HGI48_RS01840 - ABC transporter permease, at 409,238 to 410,260 _RS01840 Position (kb) 407 408 409 410Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 406.822 kb on + strand, within HGI48_RS01830at 406.823 kb on - strand, within HGI48_RS01830at 406.846 kb on + strand, within HGI48_RS01830at 406.847 kb on - strandat 406.847 kb on - strand, within HGI48_RS01830at 406.859 kb on + strand, within HGI48_RS01830at 406.859 kb on + strand, within HGI48_RS01830at 406.859 kb on + strandat 406.860 kb on - strand, within HGI48_RS01830at 406.860 kb on - strand, within HGI48_RS01830at 406.860 kb on - strand, within HGI48_RS01830at 406.860 kb on - strand, within HGI48_RS01830at 406.860 kb on - strand, within HGI48_RS01830at 406.897 kb on + strand, within HGI48_RS01830at 406.898 kb on - strand, within HGI48_RS01830at 407.012 kb on + strandat 407.013 kb on - strand, within HGI48_RS01830at 407.013 kb on - strand, within HGI48_RS01830at 407.085 kb on - strand, within HGI48_RS01830at 407.085 kb on - strand, within HGI48_RS01830at 407.085 kb on - strand, within HGI48_RS01830at 407.185 kb on + strand, within HGI48_RS01830at 407.185 kb on + strand, within HGI48_RS01830at 407.186 kb on - strand, within HGI48_RS01830at 407.289 kb on + strandat 407.290 kb on - strandat 407.290 kb on - strand, within HGI48_RS01830at 407.290 kb on - strand, within HGI48_RS01830at 407.414 kb on - strand, within HGI48_RS01830at 407.576 kb on - strandat 407.608 kb on - strandat 407.630 kb on + strandat 407.631 kb on - strandat 407.631 kb on - strandat 407.631 kb on - strandat 407.631 kb on - strandat 407.633 kb on - strandat 407.633 kb on - strandat 407.641 kb on + strandat 407.641 kb on + strandat 407.642 kb on - strandat 407.642 kb on - strandat 407.642 kb on - strandat 407.703 kb on + strandat 407.704 kb on - strandat 407.875 kb on + strand, within HGI48_RS01835at 407.875 kb on + strand, within HGI48_RS01835at 407.875 kb on + strand, within HGI48_RS01835at 407.875 kb on + strand, within HGI48_RS01835at 407.875 kb on + strand, within HGI48_RS01835at 407.875 kb on + strand, within HGI48_RS01835at 407.875 kb on + strand, within HGI48_RS01835at 407.875 kb on + strand, within HGI48_RS01835at 407.875 kb on + strand, within HGI48_RS01835at 407.875 kb on + strand, within HGI48_RS01835at 407.875 kb on + strand, within HGI48_RS01835at 407.876 kb on - strand, within HGI48_RS01835at 407.876 kb on - strand, within HGI48_RS01835at 407.876 kb on - strand, within HGI48_RS01835at 407.876 kb on - strand, within HGI48_RS01835at 407.876 kb on - strand, within HGI48_RS01835at 407.876 kb on - strand, within HGI48_RS01835at 407.877 kb on + strand, within HGI48_RS01835at 407.877 kb on + strand, within HGI48_RS01835at 407.877 kb on + strand, within HGI48_RS01835at 407.877 kb on + strand, within HGI48_RS01835at 407.877 kb on + strandat 407.877 kb on + strand, within HGI48_RS01835at 407.877 kb on + strandat 407.878 kb on - strand, within HGI48_RS01835at 407.878 kb on - strand, within HGI48_RS01835at 407.878 kb on - strand, within HGI48_RS01835at 407.878 kb on - strand, within HGI48_RS01835at 407.878 kb on - strand, within HGI48_RS01835at 407.878 kb on - strand, within HGI48_RS01835at 407.881 kb on + strand, within HGI48_RS01835at 407.881 kb on + strand, within HGI48_RS01835at 407.881 kb on + strand, within HGI48_RS01835at 407.881 kb on + strand, within HGI48_RS01835at 407.881 kb on + strand, within HGI48_RS01835at 407.881 kb on + strand, within HGI48_RS01835at 407.881 kb on + strand, within HGI48_RS01835at 407.881 kb on + strand, within HGI48_RS01835at 407.881 kb on + strand, within HGI48_RS01835at 407.882 kb on - strand, within HGI48_RS01835at 407.882 kb on - strand, within HGI48_RS01835at 407.882 kb on - strand, within HGI48_RS01835at 407.882 kb on - strand, within HGI48_RS01835at 407.882 kb on - strand, within HGI48_RS01835at 407.882 kb on - strand, within HGI48_RS01835at 407.882 kb on - strand, within HGI48_RS01835at 407.882 kb on - strand, within HGI48_RS01835at 407.882 kb on - strand, within HGI48_RS01835at 407.882 kb on - strand, within HGI48_RS01835at 407.882 kb on - strand, within HGI48_RS01835at 407.882 kb on - strandat 407.882 kb on - strand, within HGI48_RS01835at 407.882 kb on - strand, within HGI48_RS01835at 408.059 kb on - strand, within HGI48_RS01835at 408.059 kb on - strandat 408.109 kb on + strand, within HGI48_RS01835at 408.110 kb on - strand, within HGI48_RS01835at 408.270 kb on + strand, within HGI48_RS01835at 408.537 kb on - strand, within HGI48_RS01835at 408.537 kb on - strand, within HGI48_RS01835at 408.537 kb on - strandat 408.577 kb on + strand, within HGI48_RS01835at 408.577 kb on + strand, within HGI48_RS01835at 408.578 kb on - strand, within HGI48_RS01835at 408.578 kb on - strand, within HGI48_RS01835at 408.578 kb on - strand, within HGI48_RS01835at 408.697 kb on + strand, within HGI48_RS01835at 408.698 kb on - strand, within HGI48_RS01835at 408.809 kb on - strand, within HGI48_RS01835at 408.809 kb on - strand, within HGI48_RS01835at 409.066 kb on + strand, within HGI48_RS01835at 409.067 kb on - strand, within HGI48_RS01835at 409.067 kb on - strand, within HGI48_RS01835at 409.067 kb on - strand, within HGI48_RS01835at 409.214 kb on + strandat 409.215 kb on - strandat 409.215 kb on - strandat 409.822 kb on + strand, within HGI48_RS01840at 409.823 kb on - strand, within HGI48_RS01840at 409.823 kb on - strand, within HGI48_RS01840at 409.823 kb on - strand, within HGI48_RS01840at 409.943 kb on + strand, within HGI48_RS01840at 409.943 kb on + strand, within HGI48_RS01840at 409.944 kb on - strand, within HGI48_RS01840at 409.944 kb on - strand, within HGI48_RS01840at 409.944 kb on - strand, within HGI48_RS01840at 409.944 kb on - strand, within HGI48_RS01840at 409.944 kb on - strand, within HGI48_RS01840at 409.944 kb on - strand, within HGI48_RS01840at 409.944 kb on - strandat 410.036 kb on - strand, within HGI48_RS01840at 410.054 kb on + strand, within HGI48_RS01840at 410.054 kb on + strand, within HGI48_RS01840at 410.055 kb on - strand, within HGI48_RS01840at 410.055 kb on - strand, within HGI48_RS01840at 410.114 kb on + strand, within HGI48_RS01840at 410.114 kb on + strand, within HGI48_RS01840at 410.114 kb on + strand, within HGI48_RS01840at 410.114 kb on + strand, within HGI48_RS01840at 410.114 kb on + strand, within HGI48_RS01840at 410.114 kb on + strand, within HGI48_RS01840at 410.114 kb on + strand, within HGI48_RS01840at 410.114 kb on + strand, within HGI48_RS01840at 410.114 kb on + strand, within HGI48_RS01840at 410.115 kb on - strand, within HGI48_RS01840at 410.115 kb on - strandat 410.143 kb on + strandat 410.144 kb on - strand, within HGI48_RS01840at 410.144 kb on - strand, within HGI48_RS01840at 410.186 kb on + strandat 410.186 kb on + strandat 410.186 kb on + strandat 410.186 kb on + strandat 410.187 kb on - strandat 410.187 kb on - strandat 410.187 kb on - strandat 410.187 kb on - strandat 410.197 kb on + strandat 410.198 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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406,822 + HGI48_RS01830 0.15 -1.8
406,823 - HGI48_RS01830 0.16 -1.1
406,846 + HGI48_RS01830 0.18 -1.1
406,847 - +3.3
406,847 - HGI48_RS01830 0.18 +1.8
406,859 + HGI48_RS01830 0.19 +1.4
406,859 + HGI48_RS01830 0.19 +0.6
406,859 + -0.4
406,860 - HGI48_RS01830 0.20 +2.4
406,860 - HGI48_RS01830 0.20 -0.6
406,860 - HGI48_RS01830 0.20 -1.0
406,860 - HGI48_RS01830 0.20 -0.8
406,860 - HGI48_RS01830 0.20 +2.4
406,897 + HGI48_RS01830 0.24 -2.1
406,898 - HGI48_RS01830 0.24 -1.1
407,012 + +1.2
407,013 - HGI48_RS01830 0.36 -2.5
407,013 - HGI48_RS01830 0.36 +0.8
407,085 - HGI48_RS01830 0.44 -2.4
407,085 - HGI48_RS01830 0.44 -1.8
407,085 - HGI48_RS01830 0.44 -1.4
407,185 + HGI48_RS01830 0.55 -1.6
407,185 + HGI48_RS01830 0.55 -2.0
407,186 - HGI48_RS01830 0.55 -2.0
407,289 + -0.4
407,290 - -0.4
407,290 - HGI48_RS01830 0.67 -3.9
407,290 - HGI48_RS01830 0.67 +2.3
407,414 - HGI48_RS01830 0.81 -2.3
407,576 - -2.7
407,608 - +2.4
407,630 + +0.4
407,631 - -1.1
407,631 - +0.7
407,631 - -2.0
407,631 - +0.4
407,633 - +1.2
407,633 - -1.1
407,641 + -0.0
407,641 + -1.4
407,642 - -1.1
407,642 - -3.2
407,642 - -1.1
407,703 + -0.4
407,704 - -2.1
407,875 + HGI48_RS01835 0.12 +0.1
407,875 + HGI48_RS01835 0.12 -1.8
407,875 + HGI48_RS01835 0.12 +2.5
407,875 + HGI48_RS01835 0.12 +1.8
407,875 + HGI48_RS01835 0.12 -2.3
407,875 + HGI48_RS01835 0.12 -1.4
407,875 + HGI48_RS01835 0.12 +0.1
407,875 + HGI48_RS01835 0.12 +1.2
407,875 + HGI48_RS01835 0.12 -1.1
407,875 + HGI48_RS01835 0.12 -1.4
407,875 + HGI48_RS01835 0.12 -0.3
407,876 - HGI48_RS01835 0.12 -2.3
407,876 - HGI48_RS01835 0.12 +0.1
407,876 - HGI48_RS01835 0.12 -2.3
407,876 - HGI48_RS01835 0.12 +0.0
407,876 - HGI48_RS01835 0.12 +1.1
407,876 - HGI48_RS01835 0.12 +0.4
407,877 + HGI48_RS01835 0.12 +2.3
407,877 + HGI48_RS01835 0.12 +2.4
407,877 + HGI48_RS01835 0.12 -0.8
407,877 + HGI48_RS01835 0.12 -0.8
407,877 + -0.4
407,877 + HGI48_RS01835 0.12 +0.1
407,877 + +2.4
407,878 - HGI48_RS01835 0.12 -0.6
407,878 - HGI48_RS01835 0.12 -0.1
407,878 - HGI48_RS01835 0.12 +1.1
407,878 - HGI48_RS01835 0.12 -0.0
407,878 - HGI48_RS01835 0.12 +2.8
407,878 - HGI48_RS01835 0.12 -2.7
407,881 + HGI48_RS01835 0.13 -1.1
407,881 + HGI48_RS01835 0.13 -2.4
407,881 + HGI48_RS01835 0.13 +0.4
407,881 + HGI48_RS01835 0.13 -3.3
407,881 + HGI48_RS01835 0.13 -0.8
407,881 + HGI48_RS01835 0.13 -3.0
407,881 + HGI48_RS01835 0.13 +1.4
407,881 + HGI48_RS01835 0.13 -1.8
407,881 + HGI48_RS01835 0.13 -1.6
407,882 - HGI48_RS01835 0.13 -0.8
407,882 - HGI48_RS01835 0.13 -1.1
407,882 - HGI48_RS01835 0.13 -2.0
407,882 - HGI48_RS01835 0.13 -1.4
407,882 - HGI48_RS01835 0.13 -2.3
407,882 - HGI48_RS01835 0.13 -1.6
407,882 - HGI48_RS01835 0.13 -1.4
407,882 - HGI48_RS01835 0.13 -2.1
407,882 - HGI48_RS01835 0.13 -1.4
407,882 - HGI48_RS01835 0.13 -0.8
407,882 - HGI48_RS01835 0.13 -2.6
407,882 - +1.9
407,882 - HGI48_RS01835 0.13 -0.8
407,882 - HGI48_RS01835 0.13 -1.6
408,059 - HGI48_RS01835 0.24 -1.6
408,059 - +3.1
408,109 + HGI48_RS01835 0.27 +2.8
408,110 - HGI48_RS01835 0.27 -1.1
408,270 + HGI48_RS01835 0.38 -1.4
408,537 - HGI48_RS01835 0.55 -1.8
408,537 - HGI48_RS01835 0.55 -0.8
408,537 - +1.2
408,577 + HGI48_RS01835 0.58 +1.4
408,577 + HGI48_RS01835 0.58 +0.7
408,578 - HGI48_RS01835 0.58 +4.2
408,578 - HGI48_RS01835 0.58 -1.3
408,578 - HGI48_RS01835 0.58 -0.1
408,697 + HGI48_RS01835 0.66 -2.0
408,698 - HGI48_RS01835 0.66 +1.0
408,809 - HGI48_RS01835 0.73 +2.9
408,809 - HGI48_RS01835 0.73 -2.7
409,066 + HGI48_RS01835 0.89 +1.8
409,067 - HGI48_RS01835 0.90 +1.8
409,067 - HGI48_RS01835 0.90 -2.1
409,067 - HGI48_RS01835 0.90 -3.2
409,214 + -1.4
409,215 - -1.1
409,215 - -0.0
409,822 + HGI48_RS01840 0.57 +1.6
409,823 - HGI48_RS01840 0.57 +1.2
409,823 - HGI48_RS01840 0.57 -1.1
409,823 - HGI48_RS01840 0.57 -2.1
409,943 + HGI48_RS01840 0.69 +0.5
409,943 + HGI48_RS01840 0.69 -2.5
409,944 - HGI48_RS01840 0.69 -2.9
409,944 - HGI48_RS01840 0.69 -2.0
409,944 - HGI48_RS01840 0.69 -1.1
409,944 - HGI48_RS01840 0.69 +1.2
409,944 - HGI48_RS01840 0.69 -1.8
409,944 - HGI48_RS01840 0.69 -0.8
409,944 - +4.6
410,036 - HGI48_RS01840 0.78 -0.8
410,054 + HGI48_RS01840 0.80 -1.4
410,054 + HGI48_RS01840 0.80 +0.8
410,055 - HGI48_RS01840 0.80 +1.5
410,055 - HGI48_RS01840 0.80 +0.8
410,114 + HGI48_RS01840 0.86 +1.8
410,114 + HGI48_RS01840 0.86 -0.2
410,114 + HGI48_RS01840 0.86 +0.7
410,114 + HGI48_RS01840 0.86 -2.4
410,114 + HGI48_RS01840 0.86 -0.8
410,114 + HGI48_RS01840 0.86 +1.6
410,114 + HGI48_RS01840 0.86 -0.6
410,114 + HGI48_RS01840 0.86 -1.8
410,114 + HGI48_RS01840 0.86 +3.9
410,115 - HGI48_RS01840 0.86 +1.4
410,115 - +0.2
410,143 + +0.2
410,144 - HGI48_RS01840 0.89 -1.1
410,144 - HGI48_RS01840 0.89 -1.4
410,186 + +1.5
410,186 + +0.9
410,186 + +0.2
410,186 + +2.1
410,187 - +1.8
410,187 - +0.2
410,187 - -1.1
410,187 - -2.7
410,197 + -0.8
410,198 - -2.3

Or see this region's nucleotide sequence