Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01565 and HGI48_RS01570 are separated by 93 nucleotides HGI48_RS01570 and HGI48_RS01575 are separated by 235 nucleotides HGI48_RS01575 and HGI48_RS01580 overlap by 4 nucleotides
HGI48_RS01565: HGI48_RS01565 - TIGR01212 family radical SAM protein, at 345,618 to 346,547
_RS01565
HGI48_RS01570: HGI48_RS01570 - aerobic respiration two-component sensor histidine kinase ArcB, at 346,641 to 348,980
_RS01570
HGI48_RS01575: HGI48_RS01575 - isoprenoid biosynthesis glyoxalase ElbB, at 349,216 to 349,869
_RS01575
HGI48_RS01580: HGI48_RS01580 - monofunctional biosynthetic peptidoglycan transglycosylase, at 349,866 to 350,615
_RS01580
Position (kb) 346
347
348
349 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 345.642 kb on - strand at 345.642 kb on - strand at 345.697 kb on + strand at 345.698 kb on - strand at 345.710 kb on + strand at 345.711 kb on - strand, within HGI48_RS01565 at 345.711 kb on - strand, within HGI48_RS01565 at 345.711 kb on - strand, within HGI48_RS01565 at 345.752 kb on + strand, within HGI48_RS01565 at 345.752 kb on + strand, within HGI48_RS01565 at 345.753 kb on - strand at 345.753 kb on - strand at 345.753 kb on - strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.877 kb on - strand, within HGI48_RS01565 at 345.878 kb on + strand, within HGI48_RS01565 at 345.879 kb on - strand, within HGI48_RS01565 at 345.879 kb on - strand, within HGI48_RS01565 at 345.879 kb on - strand, within HGI48_RS01565 at 345.888 kb on + strand, within HGI48_RS01565 at 345.888 kb on + strand, within HGI48_RS01565 at 345.888 kb on + strand at 345.888 kb on + strand, within HGI48_RS01565 at 345.888 kb on + strand, within HGI48_RS01565 at 345.889 kb on - strand, within HGI48_RS01565 at 345.889 kb on - strand, within HGI48_RS01565 at 345.918 kb on + strand, within HGI48_RS01565 at 346.014 kb on + strand, within HGI48_RS01565 at 346.030 kb on - strand, within HGI48_RS01565 at 346.030 kb on - strand, within HGI48_RS01565 at 346.030 kb on - strand, within HGI48_RS01565 at 346.114 kb on - strand, within HGI48_RS01565 at 346.156 kb on + strand, within HGI48_RS01565 at 346.156 kb on + strand at 346.156 kb on + strand, within HGI48_RS01565 at 346.156 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.338 kb on + strand, within HGI48_RS01565 at 346.338 kb on + strand, within HGI48_RS01565 at 346.339 kb on - strand, within HGI48_RS01565 at 346.389 kb on + strand, within HGI48_RS01565 at 346.389 kb on + strand, within HGI48_RS01565 at 346.390 kb on - strand, within HGI48_RS01565 at 346.397 kb on + strand, within HGI48_RS01565 at 346.397 kb on + strand, within HGI48_RS01565 at 346.398 kb on - strand at 346.482 kb on + strand at 346.482 kb on + strand at 346.483 kb on - strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.546 kb on - strand at 346.582 kb on - strand at 346.602 kb on - strand at 346.621 kb on + strand at 346.622 kb on - strand at 346.622 kb on - strand at 346.627 kb on + strand at 346.671 kb on + strand at 346.671 kb on + strand at 346.681 kb on + strand at 346.681 kb on + strand at 346.681 kb on + strand at 346.851 kb on + strand at 346.851 kb on + strand at 346.851 kb on + strand at 347.197 kb on + strand, within HGI48_RS01570 at 347.322 kb on + strand, within HGI48_RS01570 at 347.322 kb on + strand, within HGI48_RS01570 at 347.323 kb on - strand, within HGI48_RS01570 at 347.397 kb on - strand, within HGI48_RS01570 at 347.439 kb on - strand, within HGI48_RS01570 at 347.447 kb on + strand, within HGI48_RS01570 at 347.447 kb on + strand, within HGI48_RS01570 at 347.534 kb on + strand, within HGI48_RS01570 at 347.535 kb on - strand, within HGI48_RS01570 at 348.000 kb on + strand at 348.000 kb on + strand, within HGI48_RS01570 at 348.000 kb on + strand, within HGI48_RS01570 at 348.000 kb on + strand at 348.000 kb on + strand at 348.000 kb on + strand, within HGI48_RS01570 at 348.001 kb on - strand, within HGI48_RS01570 at 348.329 kb on + strand, within HGI48_RS01570 at 348.368 kb on + strand, within HGI48_RS01570 at 348.423 kb on + strand at 348.469 kb on + strand, within HGI48_RS01570 at 348.489 kb on + strand at 348.489 kb on + strand at 348.490 kb on - strand at 348.521 kb on + strand, within HGI48_RS01570 at 348.564 kb on + strand, within HGI48_RS01570 at 348.660 kb on + strand, within HGI48_RS01570 at 348.729 kb on + strand, within HGI48_RS01570 at 348.892 kb on + strand at 348.892 kb on + strand at 348.892 kb on + strand at 348.892 kb on + strand at 348.893 kb on - strand at 349.008 kb on + strand at 349.008 kb on + strand at 349.008 kb on + strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.058 kb on + strand at 349.058 kb on + strand at 349.058 kb on + strand at 349.058 kb on + strand at 349.059 kb on - strand at 349.059 kb on - strand at 349.064 kb on + strand at 349.078 kb on + strand at 349.079 kb on - strand at 349.107 kb on + strand at 349.108 kb on - strand at 349.108 kb on - strand at 349.114 kb on + strand at 349.114 kb on + strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.129 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.156 kb on - strand at 349.156 kb on - strand at 349.156 kb on - strand at 349.161 kb on - strand at 349.195 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.211 kb on - strand at 349.211 kb on - strand at 349.255 kb on + strand at 349.256 kb on - strand at 349.256 kb on - strand at 349.362 kb on + strand, within HGI48_RS01575 at 349.576 kb on - strand, within HGI48_RS01575 at 349.576 kb on - strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.633 kb on - strand, within HGI48_RS01575 at 349.633 kb on - strand, within HGI48_RS01575 at 349.633 kb on - strand, within HGI48_RS01575 at 349.653 kb on + strand, within HGI48_RS01575 at 349.661 kb on + strand, within HGI48_RS01575 at 349.661 kb on + strand, within HGI48_RS01575 at 349.668 kb on + strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.678 kb on - strand, within HGI48_RS01575 at 349.721 kb on + strand at 349.721 kb on + strand, within HGI48_RS01575 at 349.721 kb on + strand, within HGI48_RS01575 at 349.722 kb on - strand, within HGI48_RS01575 at 349.739 kb on + strand at 349.740 kb on - strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.790 kb on - strand, within HGI48_RS01575
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 345,642 - -2.5 345,642 - +0.2 345,697 + -2.5 345,698 - -0.8 345,710 + +0.8 345,711 - HGI48_RS01565 0.10 +1.4 345,711 - HGI48_RS01565 0.10 -1.6 345,711 - HGI48_RS01565 0.10 -1.6 345,752 + HGI48_RS01565 0.14 +0.6 345,752 + HGI48_RS01565 0.14 +1.2 345,753 - +0.2 345,753 - +0.2 345,753 - HGI48_RS01565 0.15 +0.0 345,876 + HGI48_RS01565 0.28 +0.6 345,876 + HGI48_RS01565 0.28 -1.6 345,876 + HGI48_RS01565 0.28 +2.7 345,876 + HGI48_RS01565 0.28 +1.3 345,877 - HGI48_RS01565 0.28 +0.2 345,878 + HGI48_RS01565 0.28 -1.1 345,879 - HGI48_RS01565 0.28 +1.0 345,879 - HGI48_RS01565 0.28 -2.1 345,879 - HGI48_RS01565 0.28 -1.6 345,888 + HGI48_RS01565 0.29 -0.8 345,888 + HGI48_RS01565 0.29 -0.1 345,888 + +3.5 345,888 + HGI48_RS01565 0.29 -1.1 345,888 + HGI48_RS01565 0.29 -1.1 345,889 - HGI48_RS01565 0.29 -1.6 345,889 - HGI48_RS01565 0.29 -1.2 345,918 + HGI48_RS01565 0.32 +2.0 346,014 + HGI48_RS01565 0.43 -1.1 346,030 - HGI48_RS01565 0.44 -1.0 346,030 - HGI48_RS01565 0.44 -1.1 346,030 - HGI48_RS01565 0.44 -1.4 346,114 - HGI48_RS01565 0.53 +1.2 346,156 + HGI48_RS01565 0.58 -0.8 346,156 + -0.4 346,156 + HGI48_RS01565 0.58 -3.0 346,156 + HGI48_RS01565 0.58 +2.2 346,285 + HGI48_RS01565 0.72 +1.5 346,285 + HGI48_RS01565 0.72 +2.2 346,285 + HGI48_RS01565 0.72 +0.9 346,285 + HGI48_RS01565 0.72 -2.4 346,285 + HGI48_RS01565 0.72 +0.9 346,338 + HGI48_RS01565 0.77 -1.9 346,338 + HGI48_RS01565 0.77 -1.8 346,339 - HGI48_RS01565 0.78 +1.6 346,389 + HGI48_RS01565 0.83 +0.5 346,389 + HGI48_RS01565 0.83 +1.8 346,390 - HGI48_RS01565 0.83 +0.3 346,397 + HGI48_RS01565 0.84 -1.9 346,397 + HGI48_RS01565 0.84 +1.2 346,398 - +2.6 346,482 + -0.4 346,482 + -3.5 346,483 - -1.6 346,545 + +1.9 346,545 + -1.9 346,545 + +0.2 346,545 + +1.2 346,545 + -1.4 346,546 - +2.0 346,582 - +1.2 346,602 - -0.5 346,621 + -3.8 346,622 - -2.6 346,622 - -2.9 346,627 + +2.5 346,671 + -1.3 346,671 + +3.1 346,681 + +1.0 346,681 + +0.5 346,681 + +2.4 346,851 + +3.5 346,851 + +2.7 346,851 + -2.1 347,197 + HGI48_RS01570 0.24 +1.3 347,322 + HGI48_RS01570 0.29 +1.0 347,322 + HGI48_RS01570 0.29 +3.4 347,323 - HGI48_RS01570 0.29 -2.7 347,397 - HGI48_RS01570 0.32 +1.0 347,439 - HGI48_RS01570 0.34 +2.2 347,447 + HGI48_RS01570 0.34 +1.6 347,447 + HGI48_RS01570 0.34 +0.5 347,534 + HGI48_RS01570 0.38 -2.1 347,535 - HGI48_RS01570 0.38 +1.0 348,000 + +5.2 348,000 + HGI48_RS01570 0.58 +1.5 348,000 + HGI48_RS01570 0.58 -1.1 348,000 + -0.4 348,000 + +2.2 348,000 + HGI48_RS01570 0.58 +2.9 348,001 - HGI48_RS01570 0.58 -1.9 348,329 + HGI48_RS01570 0.72 +2.2 348,368 + HGI48_RS01570 0.74 -0.8 348,423 + -0.4 348,469 + HGI48_RS01570 0.78 +1.4 348,489 + +0.2 348,489 + +1.6 348,490 - +3.1 348,521 + HGI48_RS01570 0.80 -1.1 348,564 + HGI48_RS01570 0.82 -0.8 348,660 + HGI48_RS01570 0.86 -1.4 348,729 + HGI48_RS01570 0.89 +1.2 348,892 + +0.3 348,892 + -1.1 348,892 + +1.2 348,892 + +0.2 348,893 - -0.8 349,008 + +2.3 349,008 + +2.2 349,008 + +2.2 349,009 - +0.8 349,009 - +3.9 349,009 - +2.5 349,009 - +3.1 349,009 - +1.1 349,033 + +0.8 349,033 + +2.5 349,033 + -0.8 349,033 + +1.7 349,033 + +6.5 349,033 + -0.4 349,033 + -2.6 349,033 + +1.1 349,033 + -1.6 349,034 - +1.7 349,034 - +1.2 349,034 - +1.8 349,034 - +0.8 349,034 - +1.1 349,034 - +2.4 349,034 - +2.1 349,034 - +1.6 349,034 - -1.1 349,034 - -1.1 349,034 - +1.4 349,058 + +1.9 349,058 + +3.4 349,058 + +1.6 349,058 + +2.3 349,059 - +0.7 349,059 - +1.2 349,064 + +0.3 349,078 + -0.9 349,079 - +0.8 349,107 + +2.1 349,108 - -3.2 349,108 - +2.1 349,114 + +1.0 349,114 + +0.6 349,115 - -2.6 349,115 - +2.2 349,115 - -1.1 349,115 - -1.1 349,115 - +1.6 349,115 - +1.8 349,115 - +0.8 349,115 - +0.3 349,129 + +2.2 349,155 + +1.2 349,155 + +6.7 349,155 + -0.3 349,155 + -0.1 349,155 + +0.8 349,155 + +1.7 349,155 + -0.8 349,155 + +1.7 349,156 - +0.7 349,156 - -1.1 349,156 - -1.4 349,161 - +0.5 349,195 + -1.2 349,210 + +0.6 349,210 + +0.9 349,210 + -0.2 349,210 + +3.4 349,210 + -0.4 349,211 - +1.4 349,211 - +1.6 349,255 + -3.2 349,256 - -1.4 349,256 - +0.2 349,362 + HGI48_RS01575 0.22 -1.1 349,576 - HGI48_RS01575 0.55 -0.8 349,576 - HGI48_RS01575 0.55 -0.6 349,632 + HGI48_RS01575 0.64 +0.2 349,632 + HGI48_RS01575 0.64 +2.2 349,632 + HGI48_RS01575 0.64 -1.1 349,632 + HGI48_RS01575 0.64 -1.4 349,632 + HGI48_RS01575 0.64 -1.4 349,633 - HGI48_RS01575 0.64 +3.2 349,633 - HGI48_RS01575 0.64 -1.6 349,633 - HGI48_RS01575 0.64 +2.8 349,653 + HGI48_RS01575 0.67 +0.8 349,661 + HGI48_RS01575 0.68 -1.1 349,661 + HGI48_RS01575 0.68 +2.1 349,668 + HGI48_RS01575 0.69 -0.4 349,669 - HGI48_RS01575 0.69 +1.1 349,669 - HGI48_RS01575 0.69 -4.2 349,669 - HGI48_RS01575 0.69 +1.8 349,669 - HGI48_RS01575 0.69 -2.6 349,669 - HGI48_RS01575 0.69 -1.8 349,669 - HGI48_RS01575 0.69 -1.9 349,678 - HGI48_RS01575 0.71 -1.1 349,721 + +3.7 349,721 + HGI48_RS01575 0.77 -0.8 349,721 + HGI48_RS01575 0.77 +1.7 349,722 - HGI48_RS01575 0.77 -2.4 349,739 + +2.5 349,740 - HGI48_RS01575 0.80 +1.7 349,789 + HGI48_RS01575 0.88 -1.9 349,789 + HGI48_RS01575 0.88 -1.1 349,789 + HGI48_RS01575 0.88 -0.8 349,789 + HGI48_RS01575 0.88 -2.7 349,789 + HGI48_RS01575 0.88 -1.6 349,789 + HGI48_RS01575 0.88 -1.6 349,790 - HGI48_RS01575 0.88 +1.2
Or see this region's nucleotide sequence