Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01150

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01145 and HGI48_RS01150 overlap by 1 nucleotidesHGI48_RS01150 and HGI48_RS01155 are separated by 1 nucleotidesHGI48_RS01155 and HGI48_RS01160 overlap by 4 nucleotidesHGI48_RS01160 and HGI48_RS01165 are separated by 1 nucleotides HGI48_RS01145: HGI48_RS01145 - 2-iminoacetate synthase ThiH, at 258,170 to 259,315 _RS01145 HGI48_RS01150: HGI48_RS01150 - thiazole synthase, at 259,315 to 260,094 _RS01150 HGI48_RS01155: HGI48_RS01155 - sulfur carrier protein ThiS, at 260,096 to 260,296 _RS01155 HGI48_RS01160: HGI48_RS01160 - HesA/MoeB/ThiF family protein, at 260,293 to 261,045 _RS01160 HGI48_RS01165: HGI48_RS01165 - thiamine phosphate synthase, at 261,047 to 261,682 _RS01165 Position (kb) 259 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 258.550 kb on - strandat 258.564 kb on + strand, within HGI48_RS01145at 258.565 kb on - strand, within HGI48_RS01145at 258.565 kb on - strand, within HGI48_RS01145at 258.565 kb on - strandat 258.565 kb on - strand, within HGI48_RS01145at 258.586 kb on + strandat 258.586 kb on + strand, within HGI48_RS01145at 258.586 kb on + strand, within HGI48_RS01145at 258.586 kb on + strand, within HGI48_RS01145at 258.586 kb on + strand, within HGI48_RS01145at 258.587 kb on - strand, within HGI48_RS01145at 258.587 kb on - strand, within HGI48_RS01145at 258.587 kb on - strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.729 kb on + strand, within HGI48_RS01145at 258.729 kb on + strand, within HGI48_RS01145at 258.730 kb on - strand, within HGI48_RS01145at 258.744 kb on + strand, within HGI48_RS01145at 258.744 kb on + strand, within HGI48_RS01145at 258.756 kb on + strand, within HGI48_RS01145at 258.756 kb on + strand, within HGI48_RS01145at 258.798 kb on + strand, within HGI48_RS01145at 258.799 kb on - strand, within HGI48_RS01145at 258.799 kb on - strand, within HGI48_RS01145at 258.879 kb on + strand, within HGI48_RS01145at 258.895 kb on + strand, within HGI48_RS01145at 258.895 kb on + strand, within HGI48_RS01145at 258.895 kb on + strandat 258.949 kb on + strandat 258.949 kb on + strand, within HGI48_RS01145at 258.949 kb on + strand, within HGI48_RS01145at 258.949 kb on + strand, within HGI48_RS01145at 258.950 kb on - strand, within HGI48_RS01145at 258.950 kb on - strand, within HGI48_RS01145at 259.026 kb on + strand, within HGI48_RS01145at 259.026 kb on + strand, within HGI48_RS01145at 259.026 kb on + strand, within HGI48_RS01145at 259.027 kb on - strand, within HGI48_RS01145at 259.060 kb on - strand, within HGI48_RS01145at 259.060 kb on - strand, within HGI48_RS01145at 259.071 kb on + strand, within HGI48_RS01145at 259.072 kb on - strand, within HGI48_RS01145at 259.072 kb on - strandat 259.072 kb on - strand, within HGI48_RS01145at 259.072 kb on - strand, within HGI48_RS01145at 259.084 kb on + strand, within HGI48_RS01145at 259.174 kb on + strandat 259.174 kb on + strand, within HGI48_RS01145at 259.174 kb on + strand, within HGI48_RS01145at 259.203 kb on - strandat 259.214 kb on + strandat 259.214 kb on + strandat 259.215 kb on - strandat 259.215 kb on - strandat 259.215 kb on - strandat 259.215 kb on - strandat 259.784 kb on + strandat 259.784 kb on + strand, within HGI48_RS01150at 259.784 kb on + strand, within HGI48_RS01150at 259.784 kb on + strand, within HGI48_RS01150at 259.784 kb on + strand, within HGI48_RS01150at 259.784 kb on + strand, within HGI48_RS01150at 259.784 kb on + strandat 259.784 kb on + strand, within HGI48_RS01150at 259.784 kb on + strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 260.067 kb on + strandat 260.067 kb on + strandat 260.338 kb on + strandat 260.338 kb on + strandat 260.476 kb on + strand, within HGI48_RS01160at 260.535 kb on - strand, within HGI48_RS01160at 260.549 kb on + strand, within HGI48_RS01160at 260.563 kb on + strand, within HGI48_RS01160at 260.854 kb on + strand, within HGI48_RS01160at 260.854 kb on + strandat 260.854 kb on + strandat 260.906 kb on + strand, within HGI48_RS01160at 260.906 kb on + strand, within HGI48_RS01160at 260.907 kb on - strand, within HGI48_RS01160at 260.907 kb on - strand, within HGI48_RS01160at 261.025 kb on - strandat 261.025 kb on - strandat 261.025 kb on - strandat 261.048 kb on + strandat 261.078 kb on - strandat 261.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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258,550 - +0.7
258,564 + HGI48_RS01145 0.34 +0.9
258,565 - HGI48_RS01145 0.34 +1.6
258,565 - HGI48_RS01145 0.34 -0.8
258,565 - +1.2
258,565 - HGI48_RS01145 0.34 +0.5
258,586 + -0.3
258,586 + HGI48_RS01145 0.36 +0.8
258,586 + HGI48_RS01145 0.36 -0.8
258,586 + HGI48_RS01145 0.36 +1.7
258,586 + HGI48_RS01145 0.36 -2.0
258,587 - HGI48_RS01145 0.36 -1.1
258,587 - HGI48_RS01145 0.36 +0.2
258,587 - HGI48_RS01145 0.36 +2.0
258,588 + HGI48_RS01145 0.36 -2.2
258,588 + HGI48_RS01145 0.36 +1.6
258,588 + HGI48_RS01145 0.36 -0.8
258,588 + HGI48_RS01145 0.36 -2.7
258,588 + HGI48_RS01145 0.36 +1.5
258,589 - HGI48_RS01145 0.37 -0.8
258,589 - HGI48_RS01145 0.37 -1.1
258,589 - HGI48_RS01145 0.37 +1.0
258,589 - HGI48_RS01145 0.37 -2.1
258,589 - HGI48_RS01145 0.37 -2.3
258,589 - HGI48_RS01145 0.37 +1.8
258,589 - HGI48_RS01145 0.37 +1.7
258,589 - HGI48_RS01145 0.37 -2.1
258,589 - HGI48_RS01145 0.37 +1.0
258,589 - HGI48_RS01145 0.37 -1.3
258,729 + HGI48_RS01145 0.49 -2.6
258,729 + HGI48_RS01145 0.49 -1.9
258,730 - HGI48_RS01145 0.49 +0.7
258,744 + HGI48_RS01145 0.50 +0.6
258,744 + HGI48_RS01145 0.50 +2.6
258,756 + HGI48_RS01145 0.51 +1.2
258,756 + HGI48_RS01145 0.51 -0.8
258,798 + HGI48_RS01145 0.55 +1.2
258,799 - HGI48_RS01145 0.55 -2.1
258,799 - HGI48_RS01145 0.55 +0.4
258,879 + HGI48_RS01145 0.62 -0.0
258,895 + HGI48_RS01145 0.63 +1.1
258,895 + HGI48_RS01145 0.63 -2.8
258,895 + +0.2
258,949 + +1.2
258,949 + HGI48_RS01145 0.68 +0.8
258,949 + HGI48_RS01145 0.68 -1.3
258,949 + HGI48_RS01145 0.68 -2.6
258,950 - HGI48_RS01145 0.68 +0.7
258,950 - HGI48_RS01145 0.68 +0.1
259,026 + HGI48_RS01145 0.75 +0.8
259,026 + HGI48_RS01145 0.75 -1.6
259,026 + HGI48_RS01145 0.75 -1.1
259,027 - HGI48_RS01145 0.75 -0.8
259,060 - HGI48_RS01145 0.78 +2.4
259,060 - HGI48_RS01145 0.78 +0.9
259,071 + HGI48_RS01145 0.79 -1.3
259,072 - HGI48_RS01145 0.79 -1.3
259,072 - -0.3
259,072 - HGI48_RS01145 0.79 -1.3
259,072 - HGI48_RS01145 0.79 -1.1
259,084 + HGI48_RS01145 0.80 +1.6
259,174 + -0.3
259,174 + HGI48_RS01145 0.88 -0.5
259,174 + HGI48_RS01145 0.88 +0.1
259,203 - +0.2
259,214 + +0.9
259,214 + -0.8
259,215 - -0.4
259,215 - +1.0
259,215 - +0.9
259,215 - -0.3
259,784 + +0.3
259,784 + HGI48_RS01150 0.60 -1.1
259,784 + HGI48_RS01150 0.60 -2.6
259,784 + HGI48_RS01150 0.60 -0.7
259,784 + HGI48_RS01150 0.60 -1.6
259,784 + HGI48_RS01150 0.60 +1.7
259,784 + -0.3
259,784 + HGI48_RS01150 0.60 -1.7
259,784 + HGI48_RS01150 0.60 +2.1
259,785 - HGI48_RS01150 0.60 +1.1
259,785 - HGI48_RS01150 0.60 +0.1
259,785 - HGI48_RS01150 0.60 -2.6
259,785 - HGI48_RS01150 0.60 +2.4
259,785 - HGI48_RS01150 0.60 +2.3
259,785 - HGI48_RS01150 0.60 -1.3
259,785 - HGI48_RS01150 0.60 -1.1
260,067 + -1.9
260,067 + -1.7
260,338 + -1.7
260,338 + +5.8
260,476 + HGI48_RS01160 0.24 -1.3
260,535 - HGI48_RS01160 0.32 -1.3
260,549 + HGI48_RS01160 0.34 -0.7
260,563 + HGI48_RS01160 0.36 +1.1
260,854 + HGI48_RS01160 0.75 -2.7
260,854 + +0.3
260,854 + -0.3
260,906 + HGI48_RS01160 0.81 +0.8
260,906 + HGI48_RS01160 0.81 +1.0
260,907 - HGI48_RS01160 0.82 +0.3
260,907 - HGI48_RS01160 0.82 -1.9
261,025 - -1.2
261,025 - -1.7
261,025 - -1.1
261,048 + +0.1
261,078 - -1.6
261,078 - -2.2

Or see this region's nucleotide sequence