Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00930 and HGI48_RS00935 are separated by 31 nucleotides HGI48_RS00935 and HGI48_RS00940 are separated by 212 nucleotides HGI48_RS00940 and HGI48_RS00945 are separated by 49 nucleotides HGI48_RS00945 and HGI48_RS00950 are separated by 96 nucleotides
HGI48_RS00930: HGI48_RS00930 - porphobilinogen synthase, at 211,708 to 212,730
_RS00930
HGI48_RS00935: HGI48_RS00935 - transcription/translation regulatory transformer protein RfaH, at 212,762 to 213,250
_RS00935
HGI48_RS00940: HGI48_RS00940 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 213,463 to 214,950
_RS00940
HGI48_RS00945: HGI48_RS00945 - NAD(P)H-flavin reductase, at 215,000 to 215,701
_RS00945
HGI48_RS00950: HGI48_RS00950 - FAD-dependent oxidoreductase, at 215,798 to 217,489
_RS00950
Position (kb) 213
214
215 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand at 212.862 kb on + strand at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.866 kb on + strand, within HGI48_RS00935 at 212.866 kb on + strand, within HGI48_RS00935 at 212.867 kb on - strand, within HGI48_RS00935 at 212.867 kb on - strand, within HGI48_RS00935 at 212.904 kb on - strand, within HGI48_RS00935 at 212.904 kb on - strand, within HGI48_RS00935 at 212.939 kb on - strand, within HGI48_RS00935 at 212.939 kb on - strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.060 kb on - strand, within HGI48_RS00935 at 213.060 kb on - strand, within HGI48_RS00935 at 213.060 kb on - strand, within HGI48_RS00935 at 213.060 kb on - strand at 213.060 kb on - strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.091 kb on - strand, within HGI48_RS00935 at 213.091 kb on - strand, within HGI48_RS00935 at 213.228 kb on + strand at 213.228 kb on + strand at 213.228 kb on + strand at 213.229 kb on - strand at 213.229 kb on - strand at 213.229 kb on - strand at 213.233 kb on + strand at 213.234 kb on - strand at 213.387 kb on + strand at 213.388 kb on - strand at 213.425 kb on + strand at 213.425 kb on + strand at 213.425 kb on + strand at 213.425 kb on + strand at 213.425 kb on + strand at 213.426 kb on - strand at 213.426 kb on - strand at 213.426 kb on - strand at 213.427 kb on + strand at 213.427 kb on + strand at 213.427 kb on + strand at 213.430 kb on + strand at 214.986 kb on + strand at 215.017 kb on + strand at 215.018 kb on - strand at 215.023 kb on - strand at 215.349 kb on - strand, within HGI48_RS00945 at 215.349 kb on - strand at 215.352 kb on + strand, within HGI48_RS00945 at 215.352 kb on + strand, within HGI48_RS00945 at 215.353 kb on - strand, within HGI48_RS00945 at 215.353 kb on - strand, within HGI48_RS00945 at 215.400 kb on + strand, within HGI48_RS00945 at 215.401 kb on - strand, within HGI48_RS00945 at 215.438 kb on + strand at 215.595 kb on - strand, within HGI48_RS00945 at 215.595 kb on - strand, within HGI48_RS00945 at 215.675 kb on + strand at 215.754 kb on - strand at 215.799 kb on + strand at 215.799 kb on + strand at 215.799 kb on + strand at 215.799 kb on + strand at 215.800 kb on - strand at 215.800 kb on - strand at 215.800 kb on - strand at 215.800 kb on - strand at 215.820 kb on + strand at 215.827 kb on + strand at 215.827 kb on + strand at 215.828 kb on - strand at 215.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 212,862 + HGI48_RS00935 0.20 +1.8 212,862 + HGI48_RS00935 0.20 +1.8 212,862 + HGI48_RS00935 0.20 -0.8 212,862 + HGI48_RS00935 0.20 -1.3 212,862 + HGI48_RS00935 0.20 +1.3 212,862 + HGI48_RS00935 0.20 -0.2 212,862 + HGI48_RS00935 0.20 +0.6 212,862 + HGI48_RS00935 0.20 +1.8 212,862 + HGI48_RS00935 0.20 +0.8 212,862 + HGI48_RS00935 0.20 -0.8 212,862 + HGI48_RS00935 0.20 +1.5 212,862 + +0.2 212,862 + -0.3 212,862 + HGI48_RS00935 0.20 +1.1 212,862 + HGI48_RS00935 0.20 +2.2 212,862 + HGI48_RS00935 0.20 +3.2 212,863 - HGI48_RS00935 0.21 -1.2 212,863 - -0.3 212,863 - HGI48_RS00935 0.21 -1.6 212,863 - HGI48_RS00935 0.21 -0.8 212,863 - HGI48_RS00935 0.21 -0.8 212,863 - HGI48_RS00935 0.21 +0.9 212,863 - HGI48_RS00935 0.21 +1.5 212,863 - HGI48_RS00935 0.21 -2.3 212,863 - HGI48_RS00935 0.21 +0.1 212,866 + HGI48_RS00935 0.21 +1.0 212,866 + HGI48_RS00935 0.21 -1.8 212,867 - HGI48_RS00935 0.21 +1.6 212,867 - HGI48_RS00935 0.21 -1.3 212,904 - HGI48_RS00935 0.29 -1.9 212,904 - HGI48_RS00935 0.29 +0.2 212,939 - HGI48_RS00935 0.36 -1.8 212,939 - HGI48_RS00935 0.36 -1.8 213,059 + HGI48_RS00935 0.61 +2.8 213,059 + HGI48_RS00935 0.61 -1.9 213,059 + HGI48_RS00935 0.61 -2.5 213,059 + HGI48_RS00935 0.61 -2.8 213,059 + HGI48_RS00935 0.61 -2.6 213,059 + HGI48_RS00935 0.61 -0.8 213,059 + HGI48_RS00935 0.61 -2.2 213,059 + HGI48_RS00935 0.61 +0.7 213,059 + HGI48_RS00935 0.61 -1.9 213,059 + HGI48_RS00935 0.61 -0.8 213,060 - HGI48_RS00935 0.61 +0.1 213,060 - HGI48_RS00935 0.61 -0.8 213,060 - HGI48_RS00935 0.61 -2.5 213,060 - -0.3 213,060 - HGI48_RS00935 0.61 -1.6 213,090 + HGI48_RS00935 0.67 -1.6 213,090 + HGI48_RS00935 0.67 -1.6 213,090 + HGI48_RS00935 0.67 +2.9 213,090 + HGI48_RS00935 0.67 +0.1 213,090 + HGI48_RS00935 0.67 +1.2 213,090 + HGI48_RS00935 0.67 -1.1 213,090 + HGI48_RS00935 0.67 -1.3 213,091 - HGI48_RS00935 0.67 -1.6 213,091 - HGI48_RS00935 0.67 -1.3 213,228 + +1.0 213,228 + -0.5 213,228 + -3.9 213,229 - +1.1 213,229 - -1.1 213,229 - -2.6 213,233 + +2.6 213,234 - +0.4 213,387 + +1.5 213,388 - -0.8 213,425 + -2.5 213,425 + +2.4 213,425 + -1.8 213,425 + +0.5 213,425 + -0.8 213,426 - -1.3 213,426 - +2.0 213,426 - -1.1 213,427 + +1.1 213,427 + -0.8 213,427 + +1.5 213,430 + -2.7 214,986 + +2.4 215,017 + -2.1 215,018 - +1.2 215,023 - +3.0 215,349 - HGI48_RS00945 0.50 +2.7 215,349 - +2.8 215,352 + HGI48_RS00945 0.50 -1.6 215,352 + HGI48_RS00945 0.50 +1.2 215,353 - HGI48_RS00945 0.50 +1.1 215,353 - HGI48_RS00945 0.50 -0.2 215,400 + HGI48_RS00945 0.57 +1.6 215,401 - HGI48_RS00945 0.57 -1.3 215,438 + -0.3 215,595 - HGI48_RS00945 0.85 -1.6 215,595 - HGI48_RS00945 0.85 -0.8 215,675 + -1.1 215,754 - -1.8 215,799 + +0.5 215,799 + +1.1 215,799 + -1.1 215,799 + +2.2 215,800 - +0.4 215,800 - -1.3 215,800 - +0.7 215,800 - +1.5 215,820 + -2.1 215,827 + +3.8 215,827 + +1.0 215,828 - -1.1 215,828 - +2.5
Or see this region's nucleotide sequence