Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00430

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
108,335	+		HGI48_RS00425	0.58	-1.8
108,335	+				-0.3
108,336	-		HGI48_RS00425	0.58	-3.2
108,398	+		HGI48_RS00425	0.62	-0.8
108,398	+		HGI48_RS00425	0.62	-1.1
108,398	+		HGI48_RS00425	0.62	-0.1
108,398	+		HGI48_RS00425	0.62	-1.3
108,398	+		HGI48_RS00425	0.62	-1.8
108,399	-		HGI48_RS00425	0.62	-1.6
108,401	+		HGI48_RS00425	0.62	+1.1
108,401	+		HGI48_RS00425	0.62	+0.3
108,401	+		HGI48_RS00425	0.62	+0.4
108,401	+				+0.2
108,402	-				+0.2
108,402	-		HGI48_RS00425	0.62	-3.1
108,465	+		HGI48_RS00425	0.67	+1.1
108,465	+				-0.3
108,466	-		HGI48_RS00425	0.67	+1.2
108,491	-		HGI48_RS00425	0.69	-1.1
108,491	-		HGI48_RS00425	0.69	+1.6
108,491	-		HGI48_RS00425	0.69	+1.2
108,491	-		HGI48_RS00425	0.69	+0.4
108,570	+		HGI48_RS00425	0.74	-1.8
108,570	+		HGI48_RS00425	0.74	-1.3
108,570	+		HGI48_RS00425	0.74	+2.0
108,575	+		HGI48_RS00425	0.75	+1.3
108,575	+		HGI48_RS00425	0.75	+2.3
108,575	+		HGI48_RS00425	0.75	+1.4
108,575	+		HGI48_RS00425	0.75	+1.6
108,575	+		HGI48_RS00425	0.75	-0.1
108,576	-		HGI48_RS00425	0.75	+1.7
108,576	-		HGI48_RS00425	0.75	-3.0
108,576	-		HGI48_RS00425	0.75	-1.1
108,576	-		HGI48_RS00425	0.75	-1.1
108,638	+				-0.3
108,642	-		HGI48_RS00425	0.79	+1.7
108,713	+		HGI48_RS00425	0.85	+1.5
108,713	+		HGI48_RS00425	0.85	+2.2
108,714	-		HGI48_RS00425	0.85	+0.7
108,714	-				+0.2
108,731	+		HGI48_RS00425	0.86	+1.9
108,732	-		HGI48_RS00425	0.86	+0.8
108,735	-		HGI48_RS00425	0.86	+0.6
108,825	-				+1.2
108,909	+				+0.7
108,910	-				-0.8
108,918	-				-1.8
108,927	+				-0.8
108,928	-				+3.0
109,001	-				+0.7
109,036	+				+0.7
109,037	-				+0.5
109,046	+				+1.4
109,047	-				+1.2
109,056	-		HGI48_RS00430	0.10	-0.2
109,056	-		HGI48_RS00430	0.10	+0.7
109,056	-		HGI48_RS00430	0.10	+1.0
109,064	+		HGI48_RS00430	0.11	-1.1
109,064	+		HGI48_RS00430	0.11	+0.9
109,064	+		HGI48_RS00430	0.11	-2.2
109,064	+		HGI48_RS00430	0.11	+1.0
109,064	+				+4.1
109,064	+		HGI48_RS00430	0.11	+1.7
109,065	-		HGI48_RS00430	0.11	-1.9
109,065	-		HGI48_RS00430	0.11	+0.4
109,065	-		HGI48_RS00430	0.11	-1.8
109,065	-		HGI48_RS00430	0.11	+0.9
109,065	-		HGI48_RS00430	0.11	-1.3
109,065	-		HGI48_RS00430	0.11	-2.1
109,081	+		HGI48_RS00430	0.12	-0.8
109,092	+		HGI48_RS00430	0.13	-1.6
109,276	+		HGI48_RS00430	0.27	+0.0
109,276	+		HGI48_RS00430	0.27	-1.6
109,276	+		HGI48_RS00430	0.27	+2.3
109,277	-		HGI48_RS00430	0.27	+1.8
109,277	-		HGI48_RS00430	0.27	+1.0
109,277	-		HGI48_RS00430	0.27	-1.1
109,277	-		HGI48_RS00430	0.27	-1.1
109,277	-		HGI48_RS00430	0.27	+2.0
109,277	-		HGI48_RS00430	0.27	-0.2
109,279	+		HGI48_RS00430	0.27	-1.9
109,279	+		HGI48_RS00430	0.27	+0.5
109,279	+		HGI48_RS00430	0.27	-0.1
109,279	+		HGI48_RS00430	0.27	+1.5
109,279	+		HGI48_RS00430	0.27	+1.4
109,279	+		HGI48_RS00430	0.27	+0.1
109,279	+		HGI48_RS00430	0.27	-1.1
109,279	+		HGI48_RS00430	0.27	+0.8
109,279	+				+0.2
109,280	-				+2.2
109,280	-		HGI48_RS00430	0.27	+2.8
109,280	-		HGI48_RS00430	0.27	+2.1
109,280	-		HGI48_RS00430	0.27	+0.9
109,280	-		HGI48_RS00430	0.27	+2.3
109,280	-		HGI48_RS00430	0.27	+0.1
109,312	-		HGI48_RS00430	0.30	+2.1
109,553	+		HGI48_RS00430	0.48	-1.1
109,554	-				+3.2
109,554	-				-0.3
109,701	+		HGI48_RS00430	0.59	-1.1
109,785	+		HGI48_RS00430	0.65	+0.7
109,785	+		HGI48_RS00430	0.65	+1.5
109,786	-		HGI48_RS00430	0.65	-2.1
109,786	-		HGI48_RS00430	0.65	+2.0
109,786	-		HGI48_RS00430	0.65	-1.6
109,790	-		HGI48_RS00430	0.66	-0.8
109,946	+		HGI48_RS00430	0.78	+1.2
109,946	+		HGI48_RS00430	0.78	-1.8
109,946	+		HGI48_RS00430	0.78	+0.1
109,946	+		HGI48_RS00430	0.78	+1.5
109,946	+		HGI48_RS00430	0.78	-1.6
109,946	+		HGI48_RS00430	0.78	-1.6
109,946	+		HGI48_RS00430	0.78	-1.8
109,947	-		HGI48_RS00430	0.78	+1.2
109,947	-		HGI48_RS00430	0.78	-2.9
109,947	-		HGI48_RS00430	0.78	+0.4
110,101	+		HGI48_RS00430	0.89	+1.0
110,101	+		HGI48_RS00430	0.89	+0.4
110,101	+		HGI48_RS00430	0.89	+0.2
110,101	+		HGI48_RS00430	0.89	+1.8
110,101	+		HGI48_RS00430	0.89	+2.4
110,101	+		HGI48_RS00430	0.89	-0.2
110,101	+		HGI48_RS00430	0.89	+0.2
110,102	-		HGI48_RS00430	0.89	+2.8
110,102	-		HGI48_RS00430	0.89	-1.3
110,103	+		HGI48_RS00430	0.89	+3.4
110,103	+		HGI48_RS00430	0.89	+0.4
110,104	-		HGI48_RS00430	0.90	-2.1
110,104	-		HGI48_RS00430	0.90	-2.3
110,194	-				-0.3
110,220	+				+2.6
110,221	-				-1.3
110,221	-				+2.8
110,395	+		HGI48_RS00435	0.26	+2.1
110,509	+		HGI48_RS00435	0.40	+0.0
110,644	-				+0.7
110,644	-		HGI48_RS00435	0.58	-1.8
110,708	+		HGI48_RS00435	0.66	-1.3
110,708	+		HGI48_RS00435	0.66	-2.2
110,708	+		HGI48_RS00435	0.66	-0.2
110,708	+		HGI48_RS00435	0.66	-1.9
110,708	+		HGI48_RS00435	0.66	-1.0
110,708	+		HGI48_RS00435	0.66	+2.0
110,708	+		HGI48_RS00435	0.66	-0.8
110,708	+		HGI48_RS00435	0.66	+1.2
110,708	+				-0.3
110,708	+				-0.3
110,708	+				-0.3
110,708	+		HGI48_RS00435	0.66	+1.8
110,709	-		HGI48_RS00435	0.66	+0.1
110,709	-		HGI48_RS00435	0.66	+1.9
110,709	-		HGI48_RS00435	0.66	+1.8
110,709	-		HGI48_RS00435	0.66	+1.2
110,709	-		HGI48_RS00435	0.66	-2.1
110,709	-		HGI48_RS00435	0.66	-0.2
110,709	-		HGI48_RS00435	0.66	-1.9
110,709	-		HGI48_RS00435	0.66	-0.8
110,710	+		HGI48_RS00435	0.66	+0.6
110,710	+		HGI48_RS00435	0.66	-2.2
110,710	+		HGI48_RS00435	0.66	-1.3
110,867	+		HGI48_RS00435	0.87	-1.9
110,867	+		HGI48_RS00435	0.87	-2.1
110,868	-		HGI48_RS00435	0.87	-1.3
110,970	+				+1.7
110,970	+				-1.8
110,971	-				+2.4
110,971	-				-1.6
110,971	-				+0.5
110,971	-				-1.3
110,971	-				-1.8
110,974	+				-1.1
110,974	+				+0.7
110,974	+				-1.8
110,974	+				+1.2
110,975	-				+0.7
110,975	-				-0.3
110,975	-				+4.5
110,975	-				-1.6
111,001	-				-1.6
111,001	-				+1.2
111,076	+				-0.3
111,077	-		HGI48_RS00440	0.19	-0.8
111,077	-		HGI48_RS00440	0.19	-1.8
111,088	+		HGI48_RS00440	0.20	-1.5
111,088	+		HGI48_RS00440	0.20	-0.1