Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00105

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00100 and HGI48_RS00105 are separated by 38 nucleotidesHGI48_RS00105 and HGI48_RS00110 are separated by 53 nucleotides HGI48_RS00100: HGI48_RS00100 - formyl-CoA transferase, at 26,003 to 27,280 _RS00100 HGI48_RS00105: HGI48_RS00105 - oxalyl-CoA decarboxylase, at 27,319 to 29,064 _RS00105 HGI48_RS00110: HGI48_RS00110 - OFA family MFS transporter, at 29,118 to 30,425 _RS00110 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 26.374 kb on + strand, within HGI48_RS00100at 26.374 kb on + strand, within HGI48_RS00100at 26.374 kb on + strand, within HGI48_RS00100at 26.375 kb on - strand, within HGI48_RS00100at 26.376 kb on + strand, within HGI48_RS00100at 26.376 kb on + strand, within HGI48_RS00100at 26.376 kb on + strand, within HGI48_RS00100at 26.376 kb on + strand, within HGI48_RS00100at 26.376 kb on + strand, within HGI48_RS00100at 26.377 kb on - strand, within HGI48_RS00100at 26.409 kb on - strand, within HGI48_RS00100at 26.449 kb on + strandat 26.454 kb on + strandat 26.454 kb on + strand, within HGI48_RS00100at 26.454 kb on + strandat 26.454 kb on + strand, within HGI48_RS00100at 26.455 kb on - strandat 26.458 kb on + strand, within HGI48_RS00100at 26.458 kb on + strand, within HGI48_RS00100at 26.459 kb on - strand, within HGI48_RS00100at 26.459 kb on - strand, within HGI48_RS00100at 26.459 kb on - strand, within HGI48_RS00100at 26.460 kb on + strand, within HGI48_RS00100at 26.460 kb on + strand, within HGI48_RS00100at 26.460 kb on + strand, within HGI48_RS00100at 26.460 kb on + strand, within HGI48_RS00100at 26.460 kb on + strandat 26.460 kb on + strand, within HGI48_RS00100at 26.460 kb on + strand, within HGI48_RS00100at 26.460 kb on + strand, within HGI48_RS00100at 26.460 kb on + strand, within HGI48_RS00100at 26.460 kb on + strand, within HGI48_RS00100at 26.460 kb on + strand, within HGI48_RS00100at 26.461 kb on - strand, within HGI48_RS00100at 26.461 kb on - strand, within HGI48_RS00100at 26.461 kb on - strand, within HGI48_RS00100at 26.461 kb on - strand, within HGI48_RS00100at 26.461 kb on - strandat 26.461 kb on - strand, within HGI48_RS00100at 26.461 kb on - strand, within HGI48_RS00100at 26.461 kb on - strand, within HGI48_RS00100at 26.461 kb on - strand, within HGI48_RS00100at 26.571 kb on + strand, within HGI48_RS00100at 26.662 kb on + strand, within HGI48_RS00100at 26.663 kb on - strand, within HGI48_RS00100at 26.709 kb on + strand, within HGI48_RS00100at 26.709 kb on + strand, within HGI48_RS00100at 26.709 kb on + strand, within HGI48_RS00100at 26.709 kb on + strand, within HGI48_RS00100at 26.709 kb on + strand, within HGI48_RS00100at 26.710 kb on - strand, within HGI48_RS00100at 26.710 kb on - strand, within HGI48_RS00100at 26.710 kb on - strand, within HGI48_RS00100at 26.710 kb on - strand, within HGI48_RS00100at 26.710 kb on - strand, within HGI48_RS00100at 26.710 kb on - strand, within HGI48_RS00100at 26.710 kb on - strand, within HGI48_RS00100at 26.853 kb on + strand, within HGI48_RS00100at 26.948 kb on - strand, within HGI48_RS00100at 27.010 kb on + strand, within HGI48_RS00100at 27.011 kb on - strand, within HGI48_RS00100at 27.023 kb on + strand, within HGI48_RS00100at 27.023 kb on + strand, within HGI48_RS00100at 27.024 kb on - strand, within HGI48_RS00100at 27.024 kb on - strand, within HGI48_RS00100at 27.024 kb on - strand, within HGI48_RS00100at 27.024 kb on - strand, within HGI48_RS00100at 27.024 kb on - strand, within HGI48_RS00100at 27.024 kb on - strand, within HGI48_RS00100at 27.024 kb on - strand, within HGI48_RS00100at 27.093 kb on + strand, within HGI48_RS00100at 27.093 kb on + strand, within HGI48_RS00100at 27.093 kb on + strand, within HGI48_RS00100at 27.093 kb on + strand, within HGI48_RS00100at 27.094 kb on - strand, within HGI48_RS00100at 27.094 kb on - strand, within HGI48_RS00100at 27.122 kb on + strand, within HGI48_RS00100at 27.123 kb on - strand, within HGI48_RS00100at 27.170 kb on + strandat 27.170 kb on + strandat 27.171 kb on - strandat 27.202 kb on + strandat 27.202 kb on + strandat 27.202 kb on + strandat 27.203 kb on - strandat 27.203 kb on - strandat 27.203 kb on - strandat 27.203 kb on - strandat 27.581 kb on + strand, within HGI48_RS00105at 27.582 kb on - strand, within HGI48_RS00105at 27.582 kb on - strand, within HGI48_RS00105at 27.582 kb on - strand, within HGI48_RS00105at 27.788 kb on + strand, within HGI48_RS00105at 27.788 kb on + strand, within HGI48_RS00105at 27.788 kb on + strand, within HGI48_RS00105at 27.788 kb on + strand, within HGI48_RS00105at 27.788 kb on + strand, within HGI48_RS00105at 27.788 kb on + strand, within HGI48_RS00105at 27.789 kb on - strand, within HGI48_RS00105at 27.789 kb on - strand, within HGI48_RS00105at 27.789 kb on - strand, within HGI48_RS00105at 27.789 kb on - strand, within HGI48_RS00105at 27.789 kb on - strandat 28.120 kb on - strand, within HGI48_RS00105at 28.225 kb on + strandat 28.225 kb on + strandat 28.225 kb on + strand, within HGI48_RS00105at 28.225 kb on + strand, within HGI48_RS00105at 28.225 kb on + strand, within HGI48_RS00105at 28.225 kb on + strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strandat 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.230 kb on - strandat 28.230 kb on - strand, within HGI48_RS00105at 28.230 kb on - strand, within HGI48_RS00105at 28.230 kb on - strand, within HGI48_RS00105at 28.301 kb on + strand, within HGI48_RS00105at 28.355 kb on + strand, within HGI48_RS00105at 28.429 kb on - strand, within HGI48_RS00105at 28.429 kb on - strand, within HGI48_RS00105at 28.429 kb on - strand, within HGI48_RS00105at 28.462 kb on + strand, within HGI48_RS00105at 28.462 kb on + strand, within HGI48_RS00105at 28.462 kb on + strand, within HGI48_RS00105at 28.463 kb on - strand, within HGI48_RS00105at 28.463 kb on - strand, within HGI48_RS00105at 28.465 kb on + strandat 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.466 kb on - strand, within HGI48_RS00105at 28.466 kb on - strand, within HGI48_RS00105at 28.466 kb on - strand, within HGI48_RS00105at 28.475 kb on - strand, within HGI48_RS00105at 28.475 kb on - strand, within HGI48_RS00105at 28.482 kb on + strandat 28.539 kb on - strand, within HGI48_RS00105at 28.539 kb on - strand, within HGI48_RS00105at 28.562 kb on - strand, within HGI48_RS00105at 28.632 kb on + strand, within HGI48_RS00105at 28.673 kb on + strand, within HGI48_RS00105at 28.743 kb on + strand, within HGI48_RS00105at 28.743 kb on + strand, within HGI48_RS00105at 28.744 kb on - strand, within HGI48_RS00105at 28.744 kb on - strand, within HGI48_RS00105at 28.879 kb on + strand, within HGI48_RS00105at 28.879 kb on + strand, within HGI48_RS00105at 28.879 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.882 kb on - strand, within HGI48_RS00105at 28.882 kb on - strand, within HGI48_RS00105at 28.882 kb on - strand, within HGI48_RS00105at 28.882 kb on - strand, within HGI48_RS00105at 29.085 kb on + strandat 29.093 kb on + strandat 29.245 kb on + strandat 29.245 kb on + strandat 29.245 kb on + strandat 29.246 kb on - strandat 29.351 kb on - strand, within HGI48_RS00110at 29.384 kb on - strand, within HGI48_RS00110at 29.494 kb on + strand, within HGI48_RS00110at 29.494 kb on + strand, within HGI48_RS00110at 29.495 kb on - strand, within HGI48_RS00110at 29.495 kb on - strand, within HGI48_RS00110at 29.570 kb on + strand, within HGI48_RS00110at 29.570 kb on + strand, within HGI48_RS00110at 29.571 kb on - strand, within HGI48_RS00110at 29.612 kb on + strandat 29.652 kb on - strand, within HGI48_RS00110at 29.673 kb on + strand, within HGI48_RS00110at 29.715 kb on - strand, within HGI48_RS00110at 29.895 kb on - strand, within HGI48_RS00110at 29.918 kb on + strand, within HGI48_RS00110at 30.021 kb on - strand, within HGI48_RS00110at 30.023 kb on + strand, within HGI48_RS00110at 30.023 kb on + strand, within HGI48_RS00110at 30.023 kb on + strand, within HGI48_RS00110at 30.037 kb on + strand, within HGI48_RS00110at 30.038 kb on - strand, within HGI48_RS00110at 30.038 kb on - strand, within HGI48_RS00110

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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26,374 + HGI48_RS00100 0.29 -0.7
26,374 + HGI48_RS00100 0.29 +1.7
26,374 + HGI48_RS00100 0.29 +1.2
26,375 - HGI48_RS00100 0.29 +0.7
26,376 + HGI48_RS00100 0.29 +0.8
26,376 + HGI48_RS00100 0.29 -2.6
26,376 + HGI48_RS00100 0.29 +0.4
26,376 + HGI48_RS00100 0.29 +0.3
26,376 + HGI48_RS00100 0.29 -1.6
26,377 - HGI48_RS00100 0.29 -0.8
26,409 - HGI48_RS00100 0.32 -1.1
26,449 + +2.0
26,454 + +2.5
26,454 + HGI48_RS00100 0.35 +3.0
26,454 + +0.2
26,454 + HGI48_RS00100 0.35 -0.8
26,455 - -0.3
26,458 + HGI48_RS00100 0.36 +0.3
26,458 + HGI48_RS00100 0.36 +1.6
26,459 - HGI48_RS00100 0.36 -1.1
26,459 - HGI48_RS00100 0.36 -2.1
26,459 - HGI48_RS00100 0.36 +0.9
26,460 + HGI48_RS00100 0.36 +3.4
26,460 + HGI48_RS00100 0.36 +1.2
26,460 + HGI48_RS00100 0.36 +1.0
26,460 + HGI48_RS00100 0.36 -2.7
26,460 + +0.2
26,460 + HGI48_RS00100 0.36 -1.3
26,460 + HGI48_RS00100 0.36 -1.6
26,460 + HGI48_RS00100 0.36 -1.1
26,460 + HGI48_RS00100 0.36 +0.5
26,460 + HGI48_RS00100 0.36 +2.2
26,460 + HGI48_RS00100 0.36 +1.2
26,461 - HGI48_RS00100 0.36 -1.6
26,461 - HGI48_RS00100 0.36 +1.1
26,461 - HGI48_RS00100 0.36 -0.8
26,461 - HGI48_RS00100 0.36 -0.6
26,461 - -0.3
26,461 - HGI48_RS00100 0.36 -1.3
26,461 - HGI48_RS00100 0.36 -2.2
26,461 - HGI48_RS00100 0.36 -2.2
26,461 - HGI48_RS00100 0.36 -0.5
26,571 + HGI48_RS00100 0.44 -2.2
26,662 + HGI48_RS00100 0.52 +0.5
26,663 - HGI48_RS00100 0.52 -0.8
26,709 + HGI48_RS00100 0.55 +1.6
26,709 + HGI48_RS00100 0.55 +1.4
26,709 + HGI48_RS00100 0.55 -1.1
26,709 + HGI48_RS00100 0.55 -1.1
26,709 + HGI48_RS00100 0.55 +3.4
26,710 - HGI48_RS00100 0.55 -1.1
26,710 - HGI48_RS00100 0.55 -2.9
26,710 - HGI48_RS00100 0.55 -1.0
26,710 - HGI48_RS00100 0.55 -1.8
26,710 - HGI48_RS00100 0.55 -2.6
26,710 - HGI48_RS00100 0.55 +2.0
26,710 - HGI48_RS00100 0.55 -1.1
26,853 + HGI48_RS00100 0.67 -2.3
26,948 - HGI48_RS00100 0.74 +0.5
27,010 + HGI48_RS00100 0.79 +0.5
27,011 - HGI48_RS00100 0.79 -0.8
27,023 + HGI48_RS00100 0.80 +4.8
27,023 + HGI48_RS00100 0.80 +2.4
27,024 - HGI48_RS00100 0.80 +0.0
27,024 - HGI48_RS00100 0.80 -1.8
27,024 - HGI48_RS00100 0.80 +1.1
27,024 - HGI48_RS00100 0.80 -0.3
27,024 - HGI48_RS00100 0.80 +0.1
27,024 - HGI48_RS00100 0.80 +2.2
27,024 - HGI48_RS00100 0.80 -1.3
27,093 + HGI48_RS00100 0.85 -2.9
27,093 + HGI48_RS00100 0.85 +1.7
27,093 + HGI48_RS00100 0.85 -1.3
27,093 + HGI48_RS00100 0.85 -2.5
27,094 - HGI48_RS00100 0.85 +1.1
27,094 - HGI48_RS00100 0.85 +0.2
27,122 + HGI48_RS00100 0.88 -2.3
27,123 - HGI48_RS00100 0.88 +0.5
27,170 + -1.1
27,170 + -1.8
27,171 - -1.1
27,202 + +3.5
27,202 + +1.8
27,202 + +1.2
27,203 - +0.8
27,203 - +0.9
27,203 - -2.3
27,203 - -1.3
27,581 + HGI48_RS00105 0.15 -0.8
27,582 - HGI48_RS00105 0.15 +0.3
27,582 - HGI48_RS00105 0.15 +3.6
27,582 - HGI48_RS00105 0.15 +0.7
27,788 + HGI48_RS00105 0.27 -1.6
27,788 + HGI48_RS00105 0.27 -1.6
27,788 + HGI48_RS00105 0.27 +1.2
27,788 + HGI48_RS00105 0.27 -1.8
27,788 + HGI48_RS00105 0.27 -1.1
27,788 + HGI48_RS00105 0.27 +0.7
27,789 - HGI48_RS00105 0.27 -2.1
27,789 - HGI48_RS00105 0.27 +1.0
27,789 - HGI48_RS00105 0.27 -0.8
27,789 - HGI48_RS00105 0.27 +1.0
27,789 - -0.3
28,120 - HGI48_RS00105 0.46 -3.4
28,225 + +3.2
28,225 + +0.2
28,225 + HGI48_RS00105 0.52 -2.9
28,225 + HGI48_RS00105 0.52 +0.8
28,225 + HGI48_RS00105 0.52 +2.2
28,225 + HGI48_RS00105 0.52 +2.0
28,226 - HGI48_RS00105 0.52 -1.9
28,226 - HGI48_RS00105 0.52 +0.8
28,226 - HGI48_RS00105 0.52 +0.3
28,226 - HGI48_RS00105 0.52 +1.0
28,226 - HGI48_RS00105 0.52 +0.7
28,229 + HGI48_RS00105 0.52 +1.8
28,229 + HGI48_RS00105 0.52 +0.7
28,229 + HGI48_RS00105 0.52 -1.1
28,229 + +0.2
28,229 + HGI48_RS00105 0.52 -2.3
28,229 + HGI48_RS00105 0.52 +1.5
28,229 + HGI48_RS00105 0.52 -2.5
28,230 - -0.3
28,230 - HGI48_RS00105 0.52 -1.1
28,230 - HGI48_RS00105 0.52 -2.8
28,230 - HGI48_RS00105 0.52 -2.6
28,301 + HGI48_RS00105 0.56 +1.4
28,355 + HGI48_RS00105 0.59 +1.2
28,429 - HGI48_RS00105 0.64 -1.4
28,429 - HGI48_RS00105 0.64 +0.6
28,429 - HGI48_RS00105 0.64 +3.2
28,462 + HGI48_RS00105 0.65 -2.6
28,462 + HGI48_RS00105 0.65 -1.1
28,462 + HGI48_RS00105 0.65 +2.8
28,463 - HGI48_RS00105 0.66 -2.2
28,463 - HGI48_RS00105 0.66 +1.6
28,465 + +0.2
28,465 + HGI48_RS00105 0.66 -1.1
28,465 + HGI48_RS00105 0.66 -0.5
28,465 + HGI48_RS00105 0.66 +1.0
28,465 + HGI48_RS00105 0.66 -2.5
28,465 + HGI48_RS00105 0.66 -2.2
28,465 + HGI48_RS00105 0.66 -1.1
28,466 - HGI48_RS00105 0.66 +1.5
28,466 - HGI48_RS00105 0.66 -0.4
28,466 - HGI48_RS00105 0.66 +0.5
28,475 - HGI48_RS00105 0.66 -1.3
28,475 - HGI48_RS00105 0.66 +0.4
28,482 + +1.8
28,539 - HGI48_RS00105 0.70 +0.7
28,539 - HGI48_RS00105 0.70 +0.9
28,562 - HGI48_RS00105 0.71 -2.1
28,632 + HGI48_RS00105 0.75 +2.4
28,673 + HGI48_RS00105 0.78 +2.4
28,743 + HGI48_RS00105 0.82 -2.6
28,743 + HGI48_RS00105 0.82 -1.3
28,744 - HGI48_RS00105 0.82 -0.8
28,744 - HGI48_RS00105 0.82 -1.6
28,879 + HGI48_RS00105 0.89 -0.8
28,879 + HGI48_RS00105 0.89 -1.9
28,879 + HGI48_RS00105 0.89 +2.4
28,881 + HGI48_RS00105 0.89 +0.3
28,881 + HGI48_RS00105 0.89 +0.9
28,881 + HGI48_RS00105 0.89 +2.1
28,881 + HGI48_RS00105 0.89 +0.2
28,881 + HGI48_RS00105 0.89 -1.8
28,881 + HGI48_RS00105 0.89 +1.5
28,881 + HGI48_RS00105 0.89 +1.0
28,882 - HGI48_RS00105 0.90 +2.5
28,882 - HGI48_RS00105 0.90 +0.1
28,882 - HGI48_RS00105 0.90 -0.8
28,882 - HGI48_RS00105 0.90 -1.6
29,085 + +0.2
29,093 + -0.0
29,245 + +2.8
29,245 + +1.0
29,245 + -1.8
29,246 - -0.8
29,351 - HGI48_RS00110 0.18 -0.8
29,384 - HGI48_RS00110 0.20 -0.8
29,494 + HGI48_RS00110 0.29 -2.1
29,494 + HGI48_RS00110 0.29 -1.1
29,495 - HGI48_RS00110 0.29 -0.0
29,495 - HGI48_RS00110 0.29 +1.0
29,570 + HGI48_RS00110 0.35 +2.9
29,570 + HGI48_RS00110 0.35 -0.8
29,571 - HGI48_RS00110 0.35 -1.1
29,612 + +0.2
29,652 - HGI48_RS00110 0.41 +0.2
29,673 + HGI48_RS00110 0.42 +1.8
29,715 - HGI48_RS00110 0.46 +1.2
29,895 - HGI48_RS00110 0.59 -1.1
29,918 + HGI48_RS00110 0.61 +0.3
30,021 - HGI48_RS00110 0.69 -3.6
30,023 + HGI48_RS00110 0.69 +1.3
30,023 + HGI48_RS00110 0.69 +1.8
30,023 + HGI48_RS00110 0.69 +2.1
30,037 + HGI48_RS00110 0.70 +0.0
30,038 - HGI48_RS00110 0.70 +0.4
30,038 - HGI48_RS00110 0.70 +0.7

Or see this region's nucleotide sequence