Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00080

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
21,328	+		HGI48_RS00075	0.10	+1.0
21,329	-		HGI48_RS00075	0.10	-1.3
21,329	-		HGI48_RS00075	0.10	-1.3
21,329	-		HGI48_RS00075	0.10	-1.3
21,355	+		HGI48_RS00075	0.13	-1.9
21,356	-		HGI48_RS00075	0.13	+1.7
21,356	-		HGI48_RS00075	0.13	-0.8
21,475	+		HGI48_RS00075	0.24	-1.8
21,475	+		HGI48_RS00075	0.24	-1.1
21,475	+		HGI48_RS00075	0.24	+1.2
21,475	+		HGI48_RS00075	0.24	-2.2
21,475	+		HGI48_RS00075	0.24	-1.6
21,475	+		HGI48_RS00075	0.24	-2.7
21,475	+				+1.2
21,476	-		HGI48_RS00075	0.24	-2.2
21,476	-		HGI48_RS00075	0.24	+0.2
21,476	-		HGI48_RS00075	0.24	+0.1
21,508	-		HGI48_RS00075	0.27	+0.1
21,657	+		HGI48_RS00075	0.41	-0.8
21,685	+		HGI48_RS00075	0.43	-2.9
21,685	+		HGI48_RS00075	0.43	-1.1
21,746	+		HGI48_RS00075	0.49	+1.4
21,746	+		HGI48_RS00075	0.49	+1.2
21,747	-		HGI48_RS00075	0.49	-1.8
21,748	+		HGI48_RS00075	0.49	-1.9
21,749	-		HGI48_RS00075	0.49	-0.0
21,749	-		HGI48_RS00075	0.49	+0.3
21,749	-		HGI48_RS00075	0.49	-1.8
21,749	-		HGI48_RS00075	0.49	-1.8
21,749	-		HGI48_RS00075	0.49	+5.3
21,772	+		HGI48_RS00075	0.52	-3.9
21,773	-				+2.7
21,911	-		HGI48_RS00075	0.65	-1.3
21,914	-		HGI48_RS00075	0.65	-1.6
21,914	-		HGI48_RS00075	0.65	-1.4
22,017	+		HGI48_RS00075	0.75	-1.3
22,018	-		HGI48_RS00075	0.75	+0.2
22,116	+		HGI48_RS00075	0.84	-0.5
22,136	-		HGI48_RS00075	0.86	+1.2
22,154	-		HGI48_RS00075	0.87	-1.9
22,161	-				-0.3
22,183	+				+0.2
22,194	+				-2.9
22,195	-				+2.6
22,198	+				-0.8
22,199	-				+1.0
22,204	+				-2.7
22,204	+				-1.8
22,205	-				-0.3
22,207	+				-0.3
22,327	+				+1.5
22,327	+				-1.1
22,327	+				+2.6
22,328	-				+4.3
22,331	+				-1.8
22,331	+				-1.1
22,487	+		HGI48_RS00080	0.14	-3.0
22,505	+		HGI48_RS00080	0.16	-0.2
22,505	+		HGI48_RS00080	0.16	+1.5
22,505	+		HGI48_RS00080	0.16	+1.2
22,505	+		HGI48_RS00080	0.16	-1.3
22,505	+				-0.3
22,505	+		HGI48_RS00080	0.16	-0.8
22,506	-		HGI48_RS00080	0.16	-2.1
22,506	-		HGI48_RS00080	0.16	-0.8
22,506	-		HGI48_RS00080	0.16	-1.6
22,509	+		HGI48_RS00080	0.16	-1.6
22,509	+		HGI48_RS00080	0.16	+0.8
22,509	+		HGI48_RS00080	0.16	+0.9
22,509	+		HGI48_RS00080	0.16	-1.1
22,509	+		HGI48_RS00080	0.16	-1.6
22,510	-		HGI48_RS00080	0.16	+1.4
22,510	-		HGI48_RS00080	0.16	+3.7
22,510	-		HGI48_RS00080	0.16	-1.1
22,522	+		HGI48_RS00080	0.17	-0.8
22,522	+		HGI48_RS00080	0.17	-1.1
22,522	+		HGI48_RS00080	0.17	-1.8
22,523	-		HGI48_RS00080	0.17	-1.8
22,523	-		HGI48_RS00080	0.17	-0.8
22,523	-		HGI48_RS00080	0.17	-0.3
22,579	+		HGI48_RS00080	0.22	-3.4
22,579	+		HGI48_RS00080	0.22	+0.2
22,580	-		HGI48_RS00080	0.22	-2.1
22,580	-				+0.2
22,626	-		HGI48_RS00080	0.26	-1.8
22,699	+				-0.3
22,730	+		HGI48_RS00080	0.34	-1.9
22,736	-		HGI48_RS00080	0.35	+0.6
22,769	+		HGI48_RS00080	0.38	-2.3
22,770	-		HGI48_RS00080	0.38	-1.3
22,770	-		HGI48_RS00080	0.38	+0.8
22,790	-		HGI48_RS00080	0.39	-0.5
22,828	-				+0.2
22,828	-		HGI48_RS00080	0.43	+0.7
22,852	+		HGI48_RS00080	0.45	+1.4
22,852	+		HGI48_RS00080	0.45	+2.8
22,852	+		HGI48_RS00080	0.45	+2.7
22,942	-		HGI48_RS00080	0.52	+2.0
23,031	-		HGI48_RS00080	0.59	-2.1
23,051	+		HGI48_RS00080	0.61	+0.8
23,051	+				+0.2
23,052	-		HGI48_RS00080	0.61	-0.8
23,052	-		HGI48_RS00080	0.61	+1.7
23,089	+		HGI48_RS00080	0.64	+1.4
23,114	-		HGI48_RS00080	0.66	-1.3
23,114	-		HGI48_RS00080	0.66	-1.6
23,114	-		HGI48_RS00080	0.66	-0.1
23,116	+		HGI48_RS00080	0.66	+0.3
23,159	+		HGI48_RS00080	0.70	-1.6
23,181	+		HGI48_RS00080	0.72	-1.3
23,181	+		HGI48_RS00080	0.72	-1.3
23,182	-		HGI48_RS00080	0.72	+1.8
23,190	+				-0.3
23,191	-		HGI48_RS00080	0.72	+0.8
23,191	-		HGI48_RS00080	0.72	-1.3
23,255	+		HGI48_RS00080	0.78	+1.1
23,264	+		HGI48_RS00080	0.78	-1.6
23,264	+		HGI48_RS00080	0.78	+0.0
23,264	+		HGI48_RS00080	0.78	+0.6
23,305	+		HGI48_RS00080	0.82	-1.9
23,306	-		HGI48_RS00080	0.82	-2.8
23,376	+		HGI48_RS00080	0.88	-0.4
23,376	+		HGI48_RS00080	0.88	+0.9
23,376	+		HGI48_RS00080	0.88	-0.1
23,377	-				+0.2
23,377	-				+1.2
23,377	-		HGI48_RS00080	0.88	-1.2
23,377	-				-0.3
23,396	+		HGI48_RS00080	0.89	-1.1
23,396	+		HGI48_RS00080	0.89	-1.3
23,396	+				+0.2
23,397	-		HGI48_RS00080	0.89	+1.7
23,397	-		HGI48_RS00080	0.89	+2.0
23,468	+				-0.0
23,507	+				-0.3
23,508	-				+1.3
23,508	-				+1.3
23,508	-				+1.2
23,508	-				+1.4
23,508	-				+0.2
23,508	-				-1.3
23,510	+				+2.0
23,510	+				-2.6
23,511	-				-1.8
23,511	-				-1.0
23,524	-				+0.5
23,524	-				-1.2
23,570	-				-1.3
23,594	+				-2.2
23,594	+				+1.1
23,594	+				-1.6
23,594	+				-2.1
23,594	+				-0.8
23,595	-				+3.3
23,595	-				+6.0
23,595	-				-1.6
23,595	-				-1.3
23,595	-				-1.1
23,595	-				-0.5
23,595	-				-3.5
23,614	+				-0.3
23,614	+				+1.9
23,614	+				+1.2
23,615	-				-1.8
23,615	-				-0.1
23,642	+		HGI48_RS00085	0.10	-1.3
23,653	-		HGI48_RS00085	0.19	-1.6
23,750	-				+1.2
23,865	+				-0.0
23,926	+				-0.3
23,927	-				-3.2
23,927	-				-0.6
24,038	+				-1.9
24,038	+				-1.1
24,038	+				+0.2
24,039	-				-0.8
24,039	-				+2.2
24,039	-				+0.2
24,039	-				-1.1
24,039	-				+0.4
24,039	-				-2.9
24,348	-		HGI48_RS00090	0.10	-0.8
24,370	+		HGI48_RS00090	0.12	-2.6
24,370	+		HGI48_RS00090	0.12	+2.2
24,371	-		HGI48_RS00090	0.12	-1.9
24,371	-		HGI48_RS00090	0.12	+2.9
24,371	-		HGI48_RS00090	0.12	+3.0
24,371	-		HGI48_RS00090	0.12	+2.1
24,478	+		HGI48_RS00090	0.21	-2.5
24,479	-		HGI48_RS00090	0.21	-1.1
24,479	-		HGI48_RS00090	0.21	-2.5
24,479	-		HGI48_RS00090	0.21	+1.7
24,485	+		HGI48_RS00090	0.21	-0.8