Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20725

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,630,814	-		HGI48_RS20720	0.26	-0.7
4,630,909	+		HGI48_RS20720	0.33	-1.3
4,630,909	+				-0.3
4,630,909	+		HGI48_RS20720	0.33	+1.1
4,630,909	+				+2.0
4,630,910	-		HGI48_RS20720	0.33	+0.5
4,630,910	-		HGI48_RS20720	0.33	-0.7
4,630,966	+		HGI48_RS20720	0.38	-0.7
4,630,966	+		HGI48_RS20720	0.38	-1.1
4,630,966	+				+1.3
4,630,966	+		HGI48_RS20720	0.38	+2.1
4,630,966	+		HGI48_RS20720	0.38	+1.7
4,630,967	-		HGI48_RS20720	0.38	+0.5
4,630,967	-		HGI48_RS20720	0.38	-0.1
4,630,967	-		HGI48_RS20720	0.38	-3.2
4,630,967	-		HGI48_RS20720	0.38	-1.0
4,630,967	-		HGI48_RS20720	0.38	+0.3
4,630,967	-		HGI48_RS20720	0.38	+0.8
4,630,968	+		HGI48_RS20720	0.38	-3.0
4,630,968	+		HGI48_RS20720	0.38	-0.7
4,630,968	+		HGI48_RS20720	0.38	-0.1
4,630,968	+		HGI48_RS20720	0.38	+2.1
4,630,968	+		HGI48_RS20720	0.38	-2.7
4,630,968	+				-0.3
4,630,968	+		HGI48_RS20720	0.38	-1.3
4,630,968	+		HGI48_RS20720	0.38	+1.6
4,630,968	+		HGI48_RS20720	0.38	+3.1
4,630,968	+		HGI48_RS20720	0.38	+0.4
4,630,968	+				+2.5
4,630,968	+				-0.3
4,630,968	+		HGI48_RS20720	0.38	+0.1
4,630,968	+				-0.3
4,630,969	-		HGI48_RS20720	0.38	+0.3
4,630,969	-		HGI48_RS20720	0.38	+1.9
4,630,969	-				-0.3
4,630,969	-		HGI48_RS20720	0.38	-1.5
4,630,969	-		HGI48_RS20720	0.38	-1.0
4,630,969	-		HGI48_RS20720	0.38	+1.7
4,630,969	-		HGI48_RS20720	0.38	+0.9
4,630,969	-		HGI48_RS20720	0.38	-1.0
4,630,969	-		HGI48_RS20720	0.38	+1.3
4,630,969	-		HGI48_RS20720	0.38	-0.5
4,630,969	-		HGI48_RS20720	0.38	-1.0
4,630,998	+		HGI48_RS20720	0.40	-0.0
4,630,998	+		HGI48_RS20720	0.40	-0.1
4,630,998	+		HGI48_RS20720	0.40	+0.4
4,630,998	+		HGI48_RS20720	0.40	-2.4
4,630,998	+		HGI48_RS20720	0.40	+1.4
4,630,998	+		HGI48_RS20720	0.40	-0.3
4,630,998	+		HGI48_RS20720	0.40	-0.7
4,630,998	+		HGI48_RS20720	0.40	-0.4
4,630,998	+		HGI48_RS20720	0.40	-0.1
4,630,998	+		HGI48_RS20720	0.40	-0.0
4,630,999	-		HGI48_RS20720	0.40	-2.3
4,630,999	-		HGI48_RS20720	0.40	-1.7
4,630,999	-		HGI48_RS20720	0.40	+0.8
4,630,999	-		HGI48_RS20720	0.40	-3.0
4,630,999	-		HGI48_RS20720	0.40	-1.9
4,630,999	-		HGI48_RS20720	0.40	+0.4
4,631,056	+				-0.3
4,631,184	+		HGI48_RS20720	0.55	-1.3
4,631,184	+		HGI48_RS20720	0.55	-2.5
4,631,185	-		HGI48_RS20720	0.55	-1.5
4,631,283	+		HGI48_RS20720	0.62	+0.1
4,631,286	+		HGI48_RS20720	0.63	+1.2
4,631,286	+		HGI48_RS20720	0.63	-2.7
4,631,287	-		HGI48_RS20720	0.63	-1.9
4,631,287	-		HGI48_RS20720	0.63	+2.8
4,631,304	+		HGI48_RS20720	0.64	+1.1
4,631,310	+		HGI48_RS20720	0.65	-2.3
4,631,310	+		HGI48_RS20720	0.65	-0.5
4,631,311	-				-0.3
4,631,325	+		HGI48_RS20720	0.66	-0.7
4,631,326	-		HGI48_RS20720	0.66	-1.0
4,631,326	-		HGI48_RS20720	0.66	+1.4
4,631,326	-		HGI48_RS20720	0.66	-1.7
4,631,395	+		HGI48_RS20720	0.71	+0.4
4,631,396	-		HGI48_RS20720	0.71	+2.1
4,631,396	-		HGI48_RS20720	0.71	-0.7
4,631,398	+		HGI48_RS20720	0.71	+0.1
4,631,398	+		HGI48_RS20720	0.71	-1.7
4,631,398	+		HGI48_RS20720	0.71	-1.5
4,631,400	+				+2.0
4,631,400	+		HGI48_RS20720	0.72	-0.7
4,631,400	+		HGI48_RS20720	0.72	-1.7
4,631,400	+				+1.3
4,631,400	+				-0.3
4,631,400	+		HGI48_RS20720	0.72	-1.0
4,631,400	+				-0.3
4,631,400	+		HGI48_RS20720	0.72	-3.3
4,631,401	-		HGI48_RS20720	0.72	-2.6
4,631,401	-		HGI48_RS20720	0.72	+2.6
4,631,401	-		HGI48_RS20720	0.72	+0.5
4,631,401	-		HGI48_RS20720	0.72	-1.3
4,631,401	-		HGI48_RS20720	0.72	+0.8
4,631,401	-		HGI48_RS20720	0.72	-2.3
4,631,401	-		HGI48_RS20720	0.72	+2.8
4,631,401	-		HGI48_RS20720	0.72	+2.3
4,631,401	-		HGI48_RS20720	0.72	-1.3
4,631,401	-		HGI48_RS20720	0.72	+0.6
4,631,528	+		HGI48_RS20720	0.82	+0.3
4,631,761	+				+0.5
4,631,761	+				-0.2
4,631,761	+				+0.4
4,631,761	+				-0.1
4,631,762	-				-0.7
4,631,804	-				+1.3
4,631,849	+				+0.9
4,631,849	+				-0.3
4,631,849	+				-0.0
4,631,850	-				+1.5
4,631,864	+				-0.3
4,631,865	-		HGI48_RS20725	0.12	-0.9
4,631,987	+		HGI48_RS20725	0.25	+0.3
4,631,987	+		HGI48_RS20725	0.25	+0.8
4,631,987	+		HGI48_RS20725	0.25	-2.2
4,631,987	+		HGI48_RS20725	0.25	+2.0
4,631,987	+		HGI48_RS20725	0.25	+1.6
4,631,987	+		HGI48_RS20725	0.25	+1.3
4,631,988	-		HGI48_RS20725	0.25	-0.7
4,631,988	-		HGI48_RS20725	0.25	-2.0
4,631,988	-		HGI48_RS20725	0.25	+1.2
4,631,994	+				-0.3
4,632,005	+		HGI48_RS20725	0.27	-1.9
4,632,323	+		HGI48_RS20725	0.61	-2.0
4,632,323	+		HGI48_RS20725	0.61	+1.8
4,632,323	+		HGI48_RS20725	0.61	-1.5
4,632,323	+		HGI48_RS20725	0.61	-0.7
4,632,324	-		HGI48_RS20725	0.61	+2.4
4,632,324	-		HGI48_RS20725	0.61	+2.4
4,632,324	-				-0.3
4,632,324	-		HGI48_RS20725	0.61	-1.9
4,632,324	-		HGI48_RS20725	0.61	+1.9
4,632,324	-		HGI48_RS20725	0.61	-0.2
4,632,398	+		HGI48_RS20725	0.69	+0.4
4,632,398	+		HGI48_RS20725	0.69	-1.0
4,632,399	-		HGI48_RS20725	0.69	-1.3
4,632,399	-		HGI48_RS20725	0.69	+1.0
4,632,425	+		HGI48_RS20725	0.72	+0.2
4,632,520	-				-0.3
4,632,530	+		HGI48_RS20725	0.83	-1.3
4,632,530	+		HGI48_RS20725	0.83	+1.5
4,632,530	+		HGI48_RS20725	0.83	-1.7
4,632,530	+		HGI48_RS20725	0.83	+0.2
4,632,530	+		HGI48_RS20725	0.83	-1.7
4,632,530	+		HGI48_RS20725	0.83	-0.5
4,632,530	+		HGI48_RS20725	0.83	-0.9
4,632,530	+		HGI48_RS20725	0.83	-1.0
4,632,530	+		HGI48_RS20725	0.83	-1.2
4,632,530	+		HGI48_RS20725	0.83	-1.4
4,632,531	-				+2.3
4,632,531	-		HGI48_RS20725	0.83	-1.3
4,632,531	-		HGI48_RS20725	0.83	-1.9
4,632,531	-		HGI48_RS20725	0.83	-1.6
4,632,531	-		HGI48_RS20725	0.83	+0.1
4,632,531	-		HGI48_RS20725	0.83	-0.2
4,632,531	-		HGI48_RS20725	0.83	+0.4
4,632,534	+		HGI48_RS20725	0.84	-0.7
4,632,534	+		HGI48_RS20725	0.84	+1.7
4,632,534	+		HGI48_RS20725	0.84	-1.6
4,632,534	+		HGI48_RS20725	0.84	-1.9
4,632,545	+		HGI48_RS20725	0.85	+3.9
4,632,545	+		HGI48_RS20725	0.85	-1.7
4,632,545	+		HGI48_RS20725	0.85	+0.0
4,632,545	+		HGI48_RS20725	0.85	+1.4
4,632,545	+		HGI48_RS20725	0.85	-1.6
4,632,545	+		HGI48_RS20725	0.85	-1.7
4,632,545	+		HGI48_RS20725	0.85	-0.4
4,632,546	-		HGI48_RS20725	0.85	+1.3
4,632,546	-		HGI48_RS20725	0.85	-1.7
4,632,546	-		HGI48_RS20725	0.85	+0.6
4,632,546	-		HGI48_RS20725	0.85	+0.3
4,632,546	-		HGI48_RS20725	0.85	+0.5
4,632,567	+		HGI48_RS20725	0.87	-0.7
4,632,567	+		HGI48_RS20725	0.87	+1.4
4,632,567	+				+0.7
4,632,568	-		HGI48_RS20725	0.87	-2.3
4,632,568	-		HGI48_RS20725	0.87	+1.4
4,632,568	-		HGI48_RS20725	0.87	+1.0
4,632,611	-				-1.3
4,632,620	+				+1.1
4,632,620	+				+2.6
4,632,620	+				+1.5
4,632,620	+				+2.0
4,632,620	+				-0.7
4,632,620	+				+2.3
4,632,620	+				+0.1
4,632,620	+				-0.9
4,632,620	+				-1.9
4,632,621	-				+0.4
4,632,621	-				+2.9
4,632,621	-				-0.7
4,632,621	-				+0.7
4,632,621	-				-2.6
4,632,665	+				-0.1
4,632,665	+				-1.7
4,632,665	+				+1.7
4,632,666	-				-1.7
4,632,684	+				-0.7
4,632,684	+				-1.3
4,632,684	+				-1.7
4,632,684	+				-0.3
4,632,684	+				-0.6
4,632,684	+				-1.0
4,632,684	+				-0.7
4,632,685	-				+0.8
4,632,685	-				-1.5
4,632,685	-				+1.8
4,632,685	-				-1.1
4,632,685	-				-1.7
4,632,689	+				+0.7
4,632,689	+				+0.6
4,632,695	+				+0.9
4,632,696	-				+2.0
4,632,745	+				+1.6
4,632,745	+				+2.0
4,632,745	+				+0.3
4,632,745	+				+0.3
4,632,745	+				+0.3
4,632,746	-				-0.7
4,632,765	-				-2.4
4,632,783	+				+0.3
4,632,783	+				+2.9
4,632,783	+				-0.1
4,632,784	-				+0.8
4,632,963	-		HGI48_RS20730	0.18	+0.5
4,633,074	+		HGI48_RS20730	0.28	-2.0
4,633,074	+		HGI48_RS20730	0.28	+0.1
4,633,074	+		HGI48_RS20730	0.28	-0.7
4,633,074	+				-0.3
4,633,074	+		HGI48_RS20730	0.28	-0.7
4,633,074	+		HGI48_RS20730	0.28	+1.0
4,633,074	+		HGI48_RS20730	0.28	-1.0
4,633,074	+		HGI48_RS20730	0.28	-2.7
4,633,075	-		HGI48_RS20730	0.28	-1.7
4,633,075	-		HGI48_RS20730	0.28	-2.5
4,633,075	-		HGI48_RS20730	0.28	-0.0
4,633,143	+		HGI48_RS20730	0.34	-1.0
4,633,143	+		HGI48_RS20730	0.34	+1.0
4,633,143	+		HGI48_RS20730	0.34	-1.5
4,633,143	+		HGI48_RS20730	0.34	+0.1
4,633,143	+		HGI48_RS20730	0.34	-1.0
4,633,143	+		HGI48_RS20730	0.34	+1.5
4,633,144	-		HGI48_RS20730	0.34	-0.7
4,633,144	-		HGI48_RS20730	0.34	+1.5
4,633,144	-		HGI48_RS20730	0.34	-2.0
4,633,199	+		HGI48_RS20730	0.39	-2.6
4,633,200	-		HGI48_RS20730	0.39	-2.0
4,633,212	-		HGI48_RS20730	0.40	+0.6
4,633,266	+		HGI48_RS20730	0.45	-2.2
4,633,355	+		HGI48_RS20730	0.53	-1.0
4,633,355	+		HGI48_RS20730	0.53	+0.5
4,633,355	+		HGI48_RS20730	0.53	-1.3
4,633,355	+		HGI48_RS20730	0.53	+1.0
4,633,356	-		HGI48_RS20730	0.53	-1.7
4,633,356	-		HGI48_RS20730	0.53	+0.3
4,633,384	-		HGI48_RS20730	0.56	+0.6
4,633,412	+		HGI48_RS20730	0.58	+0.4
4,633,412	+		HGI48_RS20730	0.58	+2.1
4,633,412	+		HGI48_RS20730	0.58	+2.0
4,633,413	-		HGI48_RS20730	0.58	+1.1
4,633,413	-		HGI48_RS20730	0.58	+0.1
4,633,413	-		HGI48_RS20730	0.58	+0.2
4,633,413	-		HGI48_RS20730	0.58	-2.9
4,633,473	-		HGI48_RS20730	0.64	+0.7
4,633,473	-		HGI48_RS20730	0.64	-1.0
4,633,512	+				+0.3
4,633,538	+		HGI48_RS20730	0.70	+0.6
4,633,538	+		HGI48_RS20730	0.70	-1.5
4,633,539	-				+0.3
4,633,539	-				+0.7
4,633,539	-		HGI48_RS20730	0.70	-1.3
4,633,582	+		HGI48_RS20730	0.74	+1.6
4,633,582	+		HGI48_RS20730	0.74	+1.3
4,633,582	+		HGI48_RS20730	0.74	+1.3
4,633,583	-		HGI48_RS20730	0.74	-2.0
4,633,583	-		HGI48_RS20730	0.74	-2.7
4,633,583	-		HGI48_RS20730	0.74	+1.0
4,633,589	+		HGI48_RS20730	0.74	+0.4
4,633,589	+		HGI48_RS20730	0.74	+0.5
4,633,590	-		HGI48_RS20730	0.74	-1.5
4,633,596	+		HGI48_RS20730	0.75	-0.5
4,633,596	+		HGI48_RS20730	0.75	+1.0
4,633,596	+		HGI48_RS20730	0.75	+1.5
4,633,596	+		HGI48_RS20730	0.75	-2.6
4,633,597	-		HGI48_RS20730	0.75	-2.0
4,633,597	-		HGI48_RS20730	0.75	-1.5
4,633,597	-		HGI48_RS20730	0.75	-0.0
4,633,658	+		HGI48_RS20730	0.80	-1.3
4,633,658	+		HGI48_RS20730	0.80	-0.7
4,633,658	+		HGI48_RS20730	0.80	+3.6
4,633,658	+		HGI48_RS20730	0.80	-1.3
4,633,658	+		HGI48_RS20730	0.80	-1.5
4,633,658	+		HGI48_RS20730	0.80	+1.1
4,633,659	-		HGI48_RS20730	0.81	+5.2
4,633,659	-		HGI48_RS20730	0.81	-0.7