Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19935

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,455,575	+		HGI48_RS19920	0.83	-0.3
4,455,575	+		HGI48_RS19920	0.83	+0.9
4,455,576	-		HGI48_RS19920	0.84	-0.7
4,455,576	-		HGI48_RS19920	0.84	+1.0
4,455,576	-		HGI48_RS19920	0.84	+2.2
4,455,588	-		HGI48_RS19920	0.85	+2.8
4,455,616	-		HGI48_RS19920	0.87	+0.9
4,455,616	-		HGI48_RS19920	0.87	-0.1
4,455,652	-				-2.2
4,455,826	+		HGI48_RS19925	0.25	+0.4
4,455,827	-		HGI48_RS19925	0.25	+1.8
4,455,828	+		HGI48_RS19925	0.26	+5.4
4,455,976	+		HGI48_RS19925	0.80	+0.4
4,455,992	-		HGI48_RS19925	0.86	-1.0
4,456,051	-				-1.0
4,456,081	-				-1.7
4,456,101	-				-0.7
4,456,139	+		HGI48_RS19930	0.14	-1.9
4,456,172	-		HGI48_RS19930	0.20	-0.7
4,456,172	-		HGI48_RS19930	0.20	-1.3
4,456,186	-		HGI48_RS19930	0.23	-2.0
4,456,205	+		HGI48_RS19930	0.26	-1.0
4,456,264	+		HGI48_RS19930	0.37	-1.5
4,456,287	+		HGI48_RS19930	0.41	+0.4
4,456,315	-		HGI48_RS19930	0.46	-3.4
4,456,315	-				+0.3
4,456,335	+		HGI48_RS19930	0.50	-0.7
4,456,353	+		HGI48_RS19930	0.53	-0.7
4,456,357	-		HGI48_RS19930	0.54	-1.0
4,456,360	-				+1.9
4,456,378	+		HGI48_RS19930	0.58	+1.6
4,456,381	+		HGI48_RS19930	0.59	-2.2
4,456,468	-				-0.3
4,456,468	-		HGI48_RS19930	0.75	-1.0
4,456,507	+		HGI48_RS19930	0.82	-0.7
4,456,508	-		HGI48_RS19930	0.82	-3.6
4,456,550	-		HGI48_RS19930	0.90	-1.7
4,456,609	-				-2.2
4,456,655	+		HGI48_RS19935	0.16	-1.3
4,456,655	+		HGI48_RS19935	0.16	+1.0
4,456,659	-		HGI48_RS19935	0.17	-2.0
4,456,659	-		HGI48_RS19935	0.17	-1.5
4,456,659	-		HGI48_RS19935	0.17	-0.0
4,456,695	-		HGI48_RS19935	0.23	+1.3
4,456,825	+		HGI48_RS19935	0.46	-0.7
4,456,825	+		HGI48_RS19935	0.46	-0.4
4,456,826	-		HGI48_RS19935	0.46	-1.3
4,456,826	-		HGI48_RS19935	0.46	-1.0
4,456,826	-				-0.3
4,456,857	-		HGI48_RS19935	0.51	-2.6
4,456,861	+		HGI48_RS19935	0.52	-0.7
4,456,861	+		HGI48_RS19935	0.52	-0.7
4,456,863	+		HGI48_RS19935	0.52	-2.2
4,456,863	+		HGI48_RS19935	0.52	-0.7
4,456,864	-		HGI48_RS19935	0.52	-3.4
4,456,864	-		HGI48_RS19935	0.52	-3.0
4,456,869	-		HGI48_RS19935	0.53	-2.2
4,456,909	+		HGI48_RS19935	0.60	+0.6
4,456,909	+		HGI48_RS19935	0.60	+1.6
4,456,916	+		HGI48_RS19935	0.61	-2.5
4,456,916	+		HGI48_RS19935	0.61	-0.7
4,456,917	-		HGI48_RS19935	0.62	-1.0
4,456,952	+		HGI48_RS19935	0.68	-0.7
4,456,952	+		HGI48_RS19935	0.68	-0.5
4,456,953	-		HGI48_RS19935	0.68	-0.7
4,456,953	-		HGI48_RS19935	0.68	-2.2
4,456,953	-				+2.7
4,456,953	-		HGI48_RS19935	0.68	-3.0
4,456,953	-		HGI48_RS19935	0.68	-1.3
4,456,958	+		HGI48_RS19935	0.69	-4.7
4,456,958	+				+2.6
4,456,958	+		HGI48_RS19935	0.69	-1.5
4,456,958	+		HGI48_RS19935	0.69	+1.3
4,456,958	+		HGI48_RS19935	0.69	-0.7
4,456,959	-		HGI48_RS19935	0.69	-2.4
4,456,959	-		HGI48_RS19935	0.69	-2.8
4,457,036	-		HGI48_RS19935	0.82	-1.0
4,457,058	-		HGI48_RS19935	0.86	+0.1
4,457,100	+				-0.3
4,457,122	-				+1.3
4,457,132	+				-1.0
4,457,164	+				-1.7
4,457,164	+				-0.1
4,457,164	+				-0.3
4,457,165	-				-1.7
4,457,165	-				-0.3
4,457,165	-				-2.0
4,457,169	-				-0.3
4,457,169	-				-0.3
4,457,220	+				+1.3
4,457,220	+				-0.7
4,457,220	+				-2.0
4,457,220	+				-2.2
4,457,221	-				-1.9
4,457,255	+		HGI48_RS19940	0.12	-1.7
4,457,255	+		HGI48_RS19940	0.12	-0.7
4,457,255	+		HGI48_RS19940	0.12	-2.0
4,457,256	-		HGI48_RS19940	0.13	-0.2
4,457,256	-		HGI48_RS19940	0.13	-1.0
4,457,266	+		HGI48_RS19940	0.14	-0.7
4,457,266	+		HGI48_RS19940	0.14	-2.6
4,457,266	+				+0.3
4,457,267	-		HGI48_RS19940	0.14	-0.7
4,457,286	-				-0.3
4,457,322	-		HGI48_RS19940	0.20	-1.5
4,457,322	-		HGI48_RS19940	0.20	-0.6
4,457,322	-		HGI48_RS19940	0.20	-0.7
4,457,322	-		HGI48_RS19940	0.20	-1.9
4,457,323	+		HGI48_RS19940	0.20	-3.2
4,457,323	+		HGI48_RS19940	0.20	-0.7
4,457,323	+		HGI48_RS19940	0.20	-1.0
4,457,324	-		HGI48_RS19940	0.20	-0.7
4,457,354	+		HGI48_RS19940	0.24	-3.2
4,457,364	+		HGI48_RS19940	0.25	-2.0
4,457,500	-		HGI48_RS19940	0.41	-1.3
4,457,533	+		HGI48_RS19940	0.45	-3.4
4,457,533	+		HGI48_RS19940	0.45	-2.7
4,457,534	-		HGI48_RS19940	0.45	-0.6
4,457,534	-		HGI48_RS19940	0.45	-1.7
4,457,534	-		HGI48_RS19940	0.45	-1.0
4,457,543	+		HGI48_RS19940	0.46	-2.0
4,457,543	+		HGI48_RS19940	0.46	-0.7
4,457,543	+				-0.3
4,457,543	+		HGI48_RS19940	0.46	+0.5
4,457,544	-		HGI48_RS19940	0.46	-1.9
4,457,544	-				-0.3
4,457,544	-		HGI48_RS19940	0.46	-0.7
4,457,569	+		HGI48_RS19940	0.49	-1.3
4,457,570	-		HGI48_RS19940	0.49	+0.4
4,457,570	-		HGI48_RS19940	0.49	-0.7
4,457,570	-		HGI48_RS19940	0.49	-0.7
4,457,570	-		HGI48_RS19940	0.49	-2.2
4,457,570	-		HGI48_RS19940	0.49	-1.3
4,457,588	+		HGI48_RS19940	0.51	-1.9
4,457,588	+		HGI48_RS19940	0.51	-2.2
4,457,588	+		HGI48_RS19940	0.51	-1.7
4,457,588	+				-0.3
4,457,589	-		HGI48_RS19940	0.51	-1.3
4,457,589	-		HGI48_RS19940	0.51	-2.6
4,457,589	-		HGI48_RS19940	0.51	-1.5
4,457,589	-		HGI48_RS19940	0.51	-2.0
4,457,589	-		HGI48_RS19940	0.51	-1.0
4,457,590	+		HGI48_RS19940	0.51	+0.9
4,457,590	+		HGI48_RS19940	0.51	-2.4
4,457,590	+				-0.3
4,457,590	+		HGI48_RS19940	0.51	-1.3
4,457,590	+		HGI48_RS19940	0.51	-2.0
4,457,590	+		HGI48_RS19940	0.51	-0.9
4,457,590	+				-0.3
4,457,590	+				-0.3
4,457,591	-		HGI48_RS19940	0.51	+1.9
4,457,591	-		HGI48_RS19940	0.51	-1.0
4,457,591	-		HGI48_RS19940	0.51	-3.6
4,457,591	-		HGI48_RS19940	0.51	-2.1
4,457,591	-		HGI48_RS19940	0.51	-1.9
4,457,591	-		HGI48_RS19940	0.51	-3.4
4,457,591	-		HGI48_RS19940	0.51	-0.7
4,457,591	-		HGI48_RS19940	0.51	-1.3
4,457,591	-		HGI48_RS19940	0.51	-2.2
4,457,601	+		HGI48_RS19940	0.53	-1.5
4,457,602	-				-0.3
4,457,602	-		HGI48_RS19940	0.53	-2.9
4,457,635	-		HGI48_RS19940	0.56	-1.9
4,457,699	+		HGI48_RS19940	0.64	+1.9
4,457,699	+		HGI48_RS19940	0.64	-2.0
4,457,699	+		HGI48_RS19940	0.64	-2.0
4,457,699	+		HGI48_RS19940	0.64	+1.7
4,457,700	-		HGI48_RS19940	0.64	-1.7
4,457,707	+		HGI48_RS19940	0.65	-2.2
4,457,711	+		HGI48_RS19940	0.65	-1.3
4,457,711	+		HGI48_RS19940	0.65	-1.3
4,457,711	+		HGI48_RS19940	0.65	-1.0
4,457,712	-		HGI48_RS19940	0.65	-2.3
4,457,712	-		HGI48_RS19940	0.65	-3.1
4,457,712	-				-0.3
4,457,712	-		HGI48_RS19940	0.65	-1.5
4,457,746	+		HGI48_RS19940	0.69	-1.0
4,457,746	+		HGI48_RS19940	0.69	-1.7
4,457,746	+		HGI48_RS19940	0.69	-0.7
4,457,747	-		HGI48_RS19940	0.69	-1.3
4,457,747	-		HGI48_RS19940	0.69	-1.0
4,457,773	+		HGI48_RS19940	0.72	+1.3
4,457,773	+		HGI48_RS19940	0.72	-1.0
4,457,774	-		HGI48_RS19940	0.73	-2.5
4,457,820	-		HGI48_RS19940	0.78	-2.8
4,457,820	-		HGI48_RS19940	0.78	-1.5
4,457,878	+		HGI48_RS19940	0.85	-1.5
4,457,891	+		HGI48_RS19940	0.86	+0.5
4,457,891	+		HGI48_RS19940	0.86	-2.8
4,457,892	-		HGI48_RS19940	0.86	-0.7
4,457,892	-		HGI48_RS19940	0.86	+0.3
4,457,892	-		HGI48_RS19940	0.86	-2.0
4,457,910	-				-0.3
4,458,011	+				-1.5
4,458,029	+				+2.4
4,458,029	+				+0.1
4,458,031	+				-1.5
4,458,031	+				-1.0
4,458,031	+				+2.6
4,458,031	+				+0.5
4,458,032	-				-1.3
4,458,032	-				-1.9
4,458,032	-				-1.5
4,458,065	+				-1.5
4,458,065	+				+0.6
4,458,066	-				-1.7
4,458,076	+				+1.3
4,458,076	+				-1.5
4,458,076	+				-1.5
4,458,108	+				+0.9
4,458,109	-				-0.0
4,458,109	-				-0.5