Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19490

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,352,448	+		HGI48_RS19485	0.43	-1.8
4,352,525	+		HGI48_RS19485	0.49	-0.2
4,352,525	+		HGI48_RS19485	0.49	-1.1
4,352,525	+		HGI48_RS19485	0.49	+2.3
4,352,526	-		HGI48_RS19485	0.49	+1.2
4,352,526	-		HGI48_RS19485	0.49	-1.8
4,352,526	-		HGI48_RS19485	0.49	+0.2
4,352,557	+		HGI48_RS19485	0.51	+0.2
4,352,558	-		HGI48_RS19485	0.51	-1.8
4,352,558	-		HGI48_RS19485	0.51	-1.6
4,352,558	-		HGI48_RS19485	0.51	-1.1
4,352,558	-		HGI48_RS19485	0.51	-2.5
4,352,589	+		HGI48_RS19485	0.54	+0.4
4,352,637	+		HGI48_RS19485	0.57	-1.6
4,352,637	+		HGI48_RS19485	0.57	+1.5
4,352,638	-		HGI48_RS19485	0.57	-1.1
4,352,638	-		HGI48_RS19485	0.57	-0.4
4,352,638	-		HGI48_RS19485	0.57	-1.1
4,352,638	-		HGI48_RS19485	0.57	+1.0
4,352,668	-				+1.7
4,352,668	-				+0.7
4,352,713	+		HGI48_RS19485	0.63	+0.4
4,352,713	+		HGI48_RS19485	0.63	+0.5
4,352,756	-		HGI48_RS19485	0.66	-1.6
4,352,954	+		HGI48_RS19485	0.80	+0.8
4,352,954	+		HGI48_RS19485	0.80	+1.9
4,352,955	-		HGI48_RS19485	0.81	+0.2
4,353,010	+		HGI48_RS19485	0.85	-2.2
4,353,010	+		HGI48_RS19485	0.85	+1.6
4,353,111	+				-0.8
4,353,112	-				-1.3
4,353,112	-				-0.8
4,353,112	-				+1.9
4,353,173	+				+1.2
4,353,257	-				+1.7
4,353,335	+				+2.4
4,353,335	+				-1.9
4,353,336	-				+1.1
4,353,336	-				-1.9
4,353,338	+				-1.1
4,353,338	+				+0.8
4,353,639	+		HGI48_RS19490	0.27	+0.6
4,353,639	+		HGI48_RS19490	0.27	-3.1
4,353,679	+		HGI48_RS19490	0.32	-1.1
4,353,679	+		HGI48_RS19490	0.32	+1.8
4,353,680	-		HGI48_RS19490	0.32	-0.8
4,353,680	-		HGI48_RS19490	0.32	+1.9
4,353,680	-		HGI48_RS19490	0.32	-0.7
4,353,713	+		HGI48_RS19490	0.36	+1.0
4,353,713	+		HGI48_RS19490	0.36	+1.6
4,353,713	+		HGI48_RS19490	0.36	-1.6
4,353,713	+		HGI48_RS19490	0.36	+1.5
4,353,713	+		HGI48_RS19490	0.36	-0.8
4,353,713	+		HGI48_RS19490	0.36	+0.8
4,353,714	-		HGI48_RS19490	0.36	+0.7
4,353,714	-		HGI48_RS19490	0.36	-1.6
4,353,721	+		HGI48_RS19490	0.36	+2.5
4,353,721	+		HGI48_RS19490	0.36	+0.2
4,353,721	+		HGI48_RS19490	0.36	-1.1
4,353,721	+		HGI48_RS19490	0.36	-1.8
4,353,721	+		HGI48_RS19490	0.36	+2.1
4,353,722	-		HGI48_RS19490	0.37	-1.8
4,353,722	-		HGI48_RS19490	0.37	-1.3
4,353,722	-		HGI48_RS19490	0.37	-1.1
4,353,722	-		HGI48_RS19490	0.37	-1.1
4,353,722	-				+4.2
4,353,722	-				+5.9
4,353,773	+				+1.7
4,353,773	+		HGI48_RS19490	0.43	+0.1
4,353,773	+		HGI48_RS19490	0.43	+1.1
4,353,773	+		HGI48_RS19490	0.43	+2.3
4,353,773	+		HGI48_RS19490	0.43	+2.0
4,353,773	+		HGI48_RS19490	0.43	-2.9
4,353,774	-		HGI48_RS19490	0.43	+2.1
4,353,774	-		HGI48_RS19490	0.43	-0.8
4,353,774	-		HGI48_RS19490	0.43	-0.8
4,353,774	-		HGI48_RS19490	0.43	+3.2
4,353,774	-		HGI48_RS19490	0.43	-0.8
4,353,774	-		HGI48_RS19490	0.43	+2.4
4,353,777	+		HGI48_RS19490	0.43	+0.5
4,353,777	+		HGI48_RS19490	0.43	+1.6
4,353,777	+		HGI48_RS19490	0.43	-1.8
4,353,777	+		HGI48_RS19490	0.43	+1.0
4,353,777	+		HGI48_RS19490	0.43	+0.9
4,353,778	-		HGI48_RS19490	0.43	-1.9
4,353,778	-		HGI48_RS19490	0.43	-1.8
4,353,784	+		HGI48_RS19490	0.44	-0.6
4,353,785	-				-0.3
4,353,785	-		HGI48_RS19490	0.44	-1.8
4,353,785	-		HGI48_RS19490	0.44	-0.6
4,353,827	+		HGI48_RS19490	0.49	-2.3
4,353,827	+		HGI48_RS19490	0.49	+1.8
4,354,057	+		HGI48_RS19490	0.76	+0.8
4,354,084	+		HGI48_RS19490	0.79	+1.1
4,354,084	+		HGI48_RS19490	0.79	-2.1
4,354,084	+		HGI48_RS19490	0.79	+0.8
4,354,084	+		HGI48_RS19490	0.79	+0.2
4,354,085	-		HGI48_RS19490	0.79	-1.3
4,354,085	-		HGI48_RS19490	0.79	-0.2
4,354,212	+				-0.8
4,354,213	-				-1.1
4,354,227	-				+0.1
4,354,227	-				-0.3
4,354,251	-				+1.2
4,354,251	-				+0.8
4,354,320	+				+3.8
4,354,320	+				-1.3
4,354,320	+				-1.3
4,354,320	+				+1.2
4,354,323	+				-0.8
4,354,323	+				-0.8
4,354,323	+				+0.6
4,354,323	+				+1.5
4,354,323	+				+2.2
4,354,323	+				+1.2
4,354,323	+				-1.6
4,354,323	+				+0.7
4,354,323	+				-1.6
4,354,323	+				-2.2
4,354,324	-				+0.5
4,354,324	-				+2.7
4,354,324	-				+1.4
4,354,324	-				+1.5
4,354,324	-				-0.3
4,354,324	-				-0.9
4,354,324	-				-0.8
4,354,324	-				-0.8
4,354,325	+				+2.8
4,354,325	+				-1.5
4,354,325	+				+0.4
4,354,326	-				-1.1
4,354,346	+				+2.2
4,354,346	+				-1.3
4,354,346	+				-0.8
4,354,346	+				+0.6
4,354,347	-				+0.3
4,354,347	-				-1.6
4,354,347	-				+1.0
4,354,386	-				+1.6
4,354,396	-				+0.5
4,354,417	+				+1.2
4,354,417	+				+2.4
4,354,417	+				+0.3
4,354,418	-				-1.1
4,354,418	-				-0.3
4,354,418	-				+1.0
4,354,420	+				-0.8
4,354,690	+				+2.7
4,354,691	-				-1.1
4,354,693	+				-2.2
4,354,693	+				+3.9
4,354,693	+				+0.1
4,354,693	+				-1.8
4,354,693	+				-0.1
4,354,693	+				-1.3
4,354,694	-				-0.6
4,354,694	-				-2.3
4,354,697	+				+1.7
4,354,698	-				-1.6
4,354,698	-				+2.6
4,354,707	-				-0.5
4,354,722	+				+1.1
4,354,723	-				-1.1
4,354,723	-				+0.1
4,354,723	-				-1.6
4,354,767	+				+1.6
4,354,767	+				-0.8
4,354,768	-				+1.4
4,354,775	-				+2.1
4,354,893	+		HGI48_RS19500	0.12	-2.3
4,354,893	+		HGI48_RS19500	0.12	-0.3
4,354,894	-		HGI48_RS19500	0.12	+3.1
4,354,894	-		HGI48_RS19500	0.12	+3.2
4,355,110	+		HGI48_RS19500	0.33	-3.3
4,355,110	+		HGI48_RS19500	0.33	-0.8
4,355,111	-		HGI48_RS19500	0.33	+0.3
4,355,209	-		HGI48_RS19500	0.42	+1.2
4,355,230	+		HGI48_RS19500	0.44	+0.6
4,355,230	+		HGI48_RS19500	0.44	-0.2
4,355,230	+		HGI48_RS19500	0.44	-2.9
4,355,231	-		HGI48_RS19500	0.45	-0.2
4,355,231	-		HGI48_RS19500	0.45	+0.4
4,355,231	-		HGI48_RS19500	0.45	+1.6
4,355,231	-		HGI48_RS19500	0.45	-1.1
4,355,231	-		HGI48_RS19500	0.45	+1.2
4,355,231	-		HGI48_RS19500	0.45	+0.1