Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19150

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,301,350	+		HGI48_RS19145	0.27	-2.3
4,301,350	+		HGI48_RS19145	0.27	-0.7
4,301,350	+		HGI48_RS19145	0.27	+2.4
4,301,351	-		HGI48_RS19145	0.27	-1.9
4,301,504	+		HGI48_RS19145	0.39	-0.7
4,301,509	+		HGI48_RS19145	0.40	-0.7
4,301,510	-		HGI48_RS19145	0.40	+2.8
4,301,510	-		HGI48_RS19145	0.40	+1.4
4,301,510	-		HGI48_RS19145	0.40	+1.7
4,301,554	+		HGI48_RS19145	0.43	-1.9
4,301,554	+		HGI48_RS19145	0.43	-1.1
4,301,631	+		HGI48_RS19145	0.49	+0.9
4,301,632	-		HGI48_RS19145	0.49	-1.3
4,301,918	+		HGI48_RS19145	0.71	+0.4
4,301,918	+		HGI48_RS19145	0.71	-2.7
4,301,918	+		HGI48_RS19145	0.71	+1.2
4,301,918	+				+1.7
4,301,919	-		HGI48_RS19145	0.71	-2.2
4,301,919	-		HGI48_RS19145	0.71	+0.1
4,301,919	-		HGI48_RS19145	0.71	-1.7
4,301,919	-		HGI48_RS19145	0.71	-2.7
4,301,919	-		HGI48_RS19145	0.71	+0.5
4,301,919	-		HGI48_RS19145	0.71	-1.1
4,301,919	-		HGI48_RS19145	0.71	+0.4
4,301,919	-		HGI48_RS19145	0.71	-3.8
4,301,928	-		HGI48_RS19145	0.72	-2.1
4,301,928	-		HGI48_RS19145	0.72	+3.5
4,301,928	-		HGI48_RS19145	0.72	+1.3
4,301,928	-		HGI48_RS19145	0.72	+2.1
4,301,954	+		HGI48_RS19145	0.74	+0.4
4,301,980	+		HGI48_RS19145	0.76	+0.3
4,301,980	+		HGI48_RS19145	0.76	-0.0
4,301,981	-		HGI48_RS19145	0.76	+0.3
4,302,031	+		HGI48_RS19145	0.79	-1.1
4,302,031	+		HGI48_RS19145	0.79	+1.3
4,302,031	+		HGI48_RS19145	0.79	+1.3
4,302,031	+				+3.8
4,302,031	+		HGI48_RS19145	0.79	-1.6
4,302,031	+		HGI48_RS19145	0.79	+2.3
4,302,031	+		HGI48_RS19145	0.79	+1.9
4,302,032	-		HGI48_RS19145	0.80	-1.1
4,302,032	-		HGI48_RS19145	0.80	-1.1
4,302,032	-		HGI48_RS19145	0.80	-1.2
4,302,098	+		HGI48_RS19145	0.85	+1.9
4,302,098	+		HGI48_RS19145	0.85	-0.6
4,302,098	+		HGI48_RS19145	0.85	+1.6
4,302,168	-		HGI48_RS19145	0.90	-2.6
4,302,324	+				+1.8
4,302,332	+				-1.1
4,302,332	+				-0.3
4,302,332	+				-2.6
4,302,332	+				+1.9
4,302,333	-				-0.9
4,302,333	-				+0.0
4,302,553	+		HGI48_RS19150	0.14	+1.6
4,302,559	+		HGI48_RS19150	0.15	-1.9
4,302,560	-		HGI48_RS19150	0.15	+1.7
4,302,642	+		HGI48_RS19150	0.20	+1.3
4,302,642	+		HGI48_RS19150	0.20	-1.1
4,302,643	-		HGI48_RS19150	0.20	-2.2
4,302,643	-		HGI48_RS19150	0.20	-1.7
4,302,993	+		HGI48_RS19150	0.42	+1.3
4,302,994	-		HGI48_RS19150	0.42	-2.8
4,303,090	-		HGI48_RS19150	0.48	-0.3
4,303,090	-		HGI48_RS19150	0.48	-1.7
4,303,233	+		HGI48_RS19150	0.57	-0.7
4,303,233	+		HGI48_RS19150	0.57	-1.1
4,303,233	+		HGI48_RS19150	0.57	-2.1
4,303,241	+				+3.1
4,303,241	+		HGI48_RS19150	0.57	-2.2
4,303,241	+		HGI48_RS19150	0.57	+0.1
4,303,241	+		HGI48_RS19150	0.57	+0.0
4,303,241	+		HGI48_RS19150	0.57	-0.2
4,303,241	+		HGI48_RS19150	0.57	+1.1
4,303,241	+		HGI48_RS19150	0.57	+3.0
4,303,241	+		HGI48_RS19150	0.57	+1.6
4,303,241	+		HGI48_RS19150	0.57	-1.9
4,303,241	+		HGI48_RS19150	0.57	+0.7
4,303,241	+		HGI48_RS19150	0.57	-0.7
4,303,242	-				+2.3
4,303,242	-		HGI48_RS19150	0.57	+0.7
4,303,242	-				+0.3
4,303,290	+		HGI48_RS19150	0.60	-1.9
4,303,344	+		HGI48_RS19150	0.64	+0.5
4,303,488	+		HGI48_RS19150	0.73	-0.7
4,303,488	+		HGI48_RS19150	0.73	+1.5
4,303,488	+		HGI48_RS19150	0.73	-1.9
4,303,488	+		HGI48_RS19150	0.73	+1.3
4,303,488	+		HGI48_RS19150	0.73	+0.8
4,303,489	-				-0.3
4,303,489	-				+0.3
4,303,489	-		HGI48_RS19150	0.73	+0.9
4,303,489	-		HGI48_RS19150	0.73	-0.6
4,303,489	-		HGI48_RS19150	0.73	-1.2
4,303,489	-		HGI48_RS19150	0.73	+1.6
4,303,489	-		HGI48_RS19150	0.73	-0.7
4,303,489	-		HGI48_RS19150	0.73	-0.2
4,303,489	-		HGI48_RS19150	0.73	-1.9
4,303,492	+		HGI48_RS19150	0.73	-0.5
4,303,493	-				+0.3
4,303,707	-		HGI48_RS19150	0.87	-1.6
4,303,736	+		HGI48_RS19150	0.88	+0.1
4,303,737	-		HGI48_RS19150	0.88	-0.7
4,303,737	-		HGI48_RS19150	0.88	-0.7
4,303,883	-				-1.7
4,303,904	+				+1.5
4,303,904	+				+1.5
4,303,934	-				+1.5
4,303,934	-				+1.2
4,304,005	+				-1.1
4,304,006	-				+2.1
4,304,006	-				-0.8
4,304,012	-				+1.8
4,304,074	-				+0.1
4,304,166	+				+1.5
4,304,166	+				-1.9
4,304,245	+				+0.4
4,304,246	-				-1.3
4,304,246	-				-0.2
4,304,274	+				+0.1
4,304,320	+		HGI48_RS19155	0.10	-0.0
4,304,353	+		HGI48_RS19155	0.14	-4.0
4,304,367	+		HGI48_RS19155	0.15	-2.2
4,304,367	+		HGI48_RS19155	0.15	-2.2
4,304,367	+		HGI48_RS19155	0.15	+0.0
4,304,367	+		HGI48_RS19155	0.15	-2.1
4,304,367	+		HGI48_RS19155	0.15	-1.1
4,304,368	-		HGI48_RS19155	0.15	-1.6
4,304,368	-		HGI48_RS19155	0.15	+1.0
4,304,368	-		HGI48_RS19155	0.15	+1.9
4,304,368	-		HGI48_RS19155	0.15	-1.1
4,304,368	-		HGI48_RS19155	0.15	-1.9
4,304,368	-		HGI48_RS19155	0.15	+0.8
4,304,390	-		HGI48_RS19155	0.18	-1.6
4,304,416	-		HGI48_RS19155	0.21	+0.5
4,304,442	+		HGI48_RS19155	0.23	-0.6
4,304,443	-		HGI48_RS19155	0.23	-1.3
4,304,443	-				-0.3
4,304,496	+		HGI48_RS19155	0.29	+1.2
4,304,496	+		HGI48_RS19155	0.29	+1.0
4,304,497	-		HGI48_RS19155	0.29	-2.2
4,304,497	-		HGI48_RS19155	0.29	-2.3
4,304,497	-		HGI48_RS19155	0.29	+1.4
4,304,497	-		HGI48_RS19155	0.29	-2.3
4,304,497	-		HGI48_RS19155	0.29	-0.7
4,304,497	-		HGI48_RS19155	0.29	-2.1
4,304,497	-				+3.2
4,304,641	+		HGI48_RS19155	0.45	-0.0
4,304,641	+		HGI48_RS19155	0.45	-3.1
4,304,641	+		HGI48_RS19155	0.45	-0.8
4,304,641	+		HGI48_RS19155	0.45	-1.8
4,304,641	+		HGI48_RS19155	0.45	-1.2
4,304,641	+		HGI48_RS19155	0.45	-0.2
4,304,641	+		HGI48_RS19155	0.45	+1.4
4,304,642	-		HGI48_RS19155	0.45	-1.8
4,304,642	-		HGI48_RS19155	0.45	+1.7
4,304,642	-		HGI48_RS19155	0.45	+1.7
4,304,642	-		HGI48_RS19155	0.45	-0.8
4,304,642	-		HGI48_RS19155	0.45	+0.8
4,304,642	-		HGI48_RS19155	0.45	+0.4
4,304,642	-		HGI48_RS19155	0.45	+0.4
4,304,642	-		HGI48_RS19155	0.45	+1.2
4,304,652	+		HGI48_RS19155	0.46	-1.1
4,304,652	+		HGI48_RS19155	0.46	-1.1
4,304,652	+		HGI48_RS19155	0.46	-0.8
4,304,653	-		HGI48_RS19155	0.46	-2.3
4,304,697	+		HGI48_RS19155	0.51	+1.5
4,304,697	+		HGI48_RS19155	0.51	-2.3
4,304,698	-		HGI48_RS19155	0.51	+1.7
4,304,698	-		HGI48_RS19155	0.51	+0.3
4,304,743	+				-0.3
4,304,744	-		HGI48_RS19155	0.56	-1.3
4,304,770	+				-0.3
4,304,770	+		HGI48_RS19155	0.59	-2.3
4,304,771	-		HGI48_RS19155	0.59	-2.1
4,304,797	-		HGI48_RS19155	0.62	-1.8
4,304,890	-		HGI48_RS19155	0.72	-1.3
4,304,890	-		HGI48_RS19155	0.72	+0.1
4,304,890	-		HGI48_RS19155	0.72	-0.5
4,304,890	-		HGI48_RS19155	0.72	-1.1