Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17475

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,911,461	+				-2.5
3,911,462	-				+0.1
3,911,489	+				-1.2
3,911,602	+		HGI48_RS17470	0.20	+0.4
3,911,613	+		HGI48_RS17470	0.22	+0.5
3,911,613	+				-0.5
3,911,613	+		HGI48_RS17470	0.22	-1.7
3,911,613	+		HGI48_RS17470	0.22	+0.8
3,911,614	-		HGI48_RS17470	0.22	-1.7
3,911,614	-		HGI48_RS17470	0.22	-1.9
3,911,614	-		HGI48_RS17470	0.22	+1.8
3,911,614	-		HGI48_RS17470	0.22	+2.1
3,911,615	+		HGI48_RS17470	0.22	-1.2
3,911,615	+		HGI48_RS17470	0.22	+2.1
3,911,615	+		HGI48_RS17470	0.22	+2.7
3,911,616	-				+2.5
3,911,801	+		HGI48_RS17470	0.40	+1.1
3,911,843	-		HGI48_RS17470	0.45	+0.5
3,911,843	-		HGI48_RS17470	0.45	-2.0
3,911,855	+		HGI48_RS17470	0.46	-2.3
3,911,856	-		HGI48_RS17470	0.46	-0.9
3,911,856	-		HGI48_RS17470	0.46	+2.3
3,911,856	-		HGI48_RS17470	0.46	+0.7
3,911,856	-				+0.1
3,911,897	+		HGI48_RS17470	0.50	+0.9
3,911,897	+				-0.5
3,911,897	+				+0.1
3,911,900	-		HGI48_RS17470	0.50	+2.7
3,911,900	-		HGI48_RS17470	0.50	+0.4
3,911,944	-		HGI48_RS17470	0.55	+2.1
3,911,944	-		HGI48_RS17470	0.55	-2.6
3,912,053	-		HGI48_RS17470	0.65	+0.9
3,912,053	-		HGI48_RS17470	0.65	-1.9
3,912,057	+		HGI48_RS17470	0.66	+1.5
3,912,057	+		HGI48_RS17470	0.66	-1.5
3,912,057	+		HGI48_RS17470	0.66	-1.9
3,912,057	+		HGI48_RS17470	0.66	+1.5
3,912,057	+		HGI48_RS17470	0.66	+1.8
3,912,058	-		HGI48_RS17470	0.66	-1.2
3,912,058	-		HGI48_RS17470	0.66	-1.5
3,912,058	-		HGI48_RS17470	0.66	+0.7
3,912,105	+		HGI48_RS17470	0.71	-1.2
3,912,105	+		HGI48_RS17470	0.71	+0.1
3,912,105	+		HGI48_RS17470	0.71	+0.2
3,912,106	-		HGI48_RS17470	0.71	+0.7
3,912,106	-		HGI48_RS17470	0.71	+0.0
3,912,148	+		HGI48_RS17470	0.75	+0.9
3,912,148	+		HGI48_RS17470	0.75	+0.1
3,912,148	+		HGI48_RS17470	0.75	+0.1
3,912,149	-		HGI48_RS17470	0.75	+0.1
3,912,149	-		HGI48_RS17470	0.75	+0.7
3,912,252	+		HGI48_RS17470	0.85	-2.2
3,912,285	+		HGI48_RS17470	0.89	-2.8
3,912,286	-		HGI48_RS17470	0.89	-1.5
3,912,359	+				-1.7
3,912,359	+				+1.1
3,912,359	+				+0.8
3,912,360	-				-0.9
3,912,360	-				+0.8
3,912,363	+				+1.0
3,912,363	+				+0.1
3,912,364	-				+2.1
3,912,364	-				-0.9
3,912,397	-				-1.5
3,912,397	-				+1.9
3,912,418	+				+0.7
3,912,418	+				+0.1
3,912,418	+				-1.3
3,912,419	-				+2.1
3,912,419	-				+0.3
3,912,419	-				-0.9
3,912,419	-				+0.4
3,912,419	-				+1.1
3,912,419	-				+1.6
3,912,462	+				+2.0
3,912,463	-				-1.2
3,912,471	+				-1.9
3,912,471	+				-2.6
3,912,472	-				-0.1
3,912,474	+				-0.9
3,912,474	+				+0.7
3,912,474	+				+1.1
3,912,475	-				-1.5
3,912,475	-				-2.0
3,912,475	-				-0.3
3,912,475	-				+1.3
3,912,475	-				-1.2
3,912,475	-				+0.4
3,912,497	+				+0.1
3,912,522	+				+1.6
3,912,522	+				+0.1
3,912,523	-				+1.1
3,912,649	+		HGI48_RS17475	0.22	-1.5
3,912,659	-		HGI48_RS17475	0.22	-0.6
3,912,659	-		HGI48_RS17475	0.22	-2.8
3,912,737	-		HGI48_RS17475	0.30	+1.1
3,912,747	-		HGI48_RS17475	0.31	+2.1
3,912,847	+		HGI48_RS17475	0.40	-2.0
3,912,847	+		HGI48_RS17475	0.40	-0.9
3,912,847	+				+0.1
3,912,863	+		HGI48_RS17475	0.42	-2.2
3,912,863	+		HGI48_RS17475	0.42	+3.1
3,912,863	+		HGI48_RS17475	0.42	-0.9
3,912,863	+		HGI48_RS17475	0.42	+0.6
3,912,863	+		HGI48_RS17475	0.42	+0.1
3,912,864	-		HGI48_RS17475	0.42	+2.4
3,912,864	-		HGI48_RS17475	0.42	-0.0
3,912,864	-		HGI48_RS17475	0.42	+1.5
3,912,864	-		HGI48_RS17475	0.42	-1.5
3,912,864	-		HGI48_RS17475	0.42	-0.1
3,912,864	-		HGI48_RS17475	0.42	-0.9
3,912,875	-		HGI48_RS17475	0.43	+1.6
3,912,890	-		HGI48_RS17475	0.44	+1.4
3,912,942	+		HGI48_RS17475	0.49	-2.2
3,912,942	+		HGI48_RS17475	0.49	+2.8
3,912,943	-		HGI48_RS17475	0.49	+0.1
3,913,002	+		HGI48_RS17475	0.55	+0.5
3,913,002	+		HGI48_RS17475	0.55	-2.9
3,913,003	-				-0.5
3,913,012	+		HGI48_RS17475	0.56	+1.1
3,913,013	-		HGI48_RS17475	0.56	-1.7
3,913,029	+		HGI48_RS17475	0.57	-1.9
3,913,029	+		HGI48_RS17475	0.57	-2.0
3,913,030	-				+1.9
3,913,030	-		HGI48_RS17475	0.57	-2.0
3,913,030	-		HGI48_RS17475	0.57	-0.9
3,913,030	-		HGI48_RS17475	0.57	-0.9
3,913,030	-		HGI48_RS17475	0.57	-1.5
3,913,030	-		HGI48_RS17475	0.57	-0.9
3,913,030	-		HGI48_RS17475	0.57	-2.2
3,913,030	-		HGI48_RS17475	0.57	-0.9
3,913,030	-		HGI48_RS17475	0.57	+1.9
3,913,030	-		HGI48_RS17475	0.57	-0.3
3,913,034	+		HGI48_RS17475	0.58	-0.2
3,913,035	-		HGI48_RS17475	0.58	-0.3
3,913,035	-		HGI48_RS17475	0.58	-1.5
3,913,035	-		HGI48_RS17475	0.58	+1.4
3,913,048	+		HGI48_RS17475	0.59	-1.2
3,913,048	+		HGI48_RS17475	0.59	+0.4
3,913,049	-		HGI48_RS17475	0.59	+1.8
3,913,049	-				+3.4
3,913,070	+		HGI48_RS17475	0.61	+0.4
3,913,071	-		HGI48_RS17475	0.61	+1.5
3,913,192	+		HGI48_RS17475	0.72	-0.9
3,913,192	+		HGI48_RS17475	0.72	-1.5
3,913,192	+				+1.1
3,913,193	-				-0.5
3,913,225	+		HGI48_RS17475	0.75	-0.9
3,913,245	+		HGI48_RS17475	0.77	-2.9
3,913,267	+		HGI48_RS17475	0.79	+0.3
3,913,268	-				+3.7
3,913,268	-		HGI48_RS17475	0.79	-0.6
3,913,390	-				+2.1
3,913,442	+				-1.7
3,913,479	+				+5.4
3,913,479	+				+0.6
3,913,479	+				+1.5
3,913,484	+				+2.3
3,913,485	-				+1.1
3,913,495	+				+0.5
3,913,496	-				+0.1
3,913,496	-				-0.1
3,913,496	-				+0.8
3,913,496	-				+0.6
3,913,520	+				+1.5
3,913,590	+		HGI48_RS17480	0.14	+0.1
3,913,590	+		HGI48_RS17480	0.14	-2.0
3,913,591	-				+2.7
3,913,591	-		HGI48_RS17480	0.14	+0.2
3,913,642	+		HGI48_RS17480	0.21	+2.0
3,913,642	+		HGI48_RS17480	0.21	-1.5
3,913,642	+		HGI48_RS17480	0.21	-1.5
3,913,643	-		HGI48_RS17480	0.21	+0.1
3,913,678	+		HGI48_RS17480	0.25	-0.6
3,913,679	-		HGI48_RS17480	0.25	-1.7
3,913,781	+				-0.5
3,913,781	+		HGI48_RS17480	0.38	+0.9
3,913,793	+		HGI48_RS17480	0.39	+1.9
3,913,794	-		HGI48_RS17480	0.40	+0.7
3,913,970	+		HGI48_RS17480	0.62	-1.7
3,913,996	+		HGI48_RS17480	0.65	+1.3
3,913,997	-		HGI48_RS17480	0.65	-0.9
3,914,064	-		HGI48_RS17480	0.73	+0.4
3,914,182	-		HGI48_RS17480	0.88	+0.5
3,914,182	-		HGI48_RS17480	0.88	+0.1
3,914,210	+				-1.0
3,914,259	-				+1.1
3,914,278	+				-1.9
3,914,278	+				+0.1
3,914,279	-				+0.1
3,914,279	-				-1.7
3,914,296	+				-0.7
3,914,319	-				+0.1
3,914,328	+				+1.1
3,914,328	+				-2.8
3,914,328	+				-2.7
3,914,328	+				-1.2
3,914,328	+				+1.5
3,914,329	-				-0.5
3,914,329	-				-1.5
3,914,333	-				-0.5
3,914,333	-				-0.6
3,914,333	-				+1.7
3,914,385	-				+0.5
3,914,385	-				-1.5
3,914,385	-				-1.9
3,914,385	-				-0.5
3,914,415	+				-3.2
3,914,416	-				-1.7
3,914,435	+				-1.7
3,914,435	+				+2.0
3,914,435	+				-0.5
3,914,435	+				+1.1
3,914,435	+				-0.9
3,914,435	+				-0.0
3,914,435	+				-0.2
3,914,436	-				-1.2
3,914,436	-				+0.3
3,914,436	-				-1.9
3,914,436	-				-0.1
3,914,462	+				+1.5
3,914,462	+				+0.3
3,914,462	+				+1.1
3,914,463	-				-0.5
3,914,463	-				+2.5
3,914,463	-				+2.0