Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17225

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,860,529	+				-0.9
3,860,579	+				+1.2
3,860,763	+				-0.5
3,860,763	+		HGI48_RS17220	0.31	-1.5
3,860,764	-		HGI48_RS17220	0.31	-2.4
3,860,764	-		HGI48_RS17220	0.31	-2.2
3,860,764	-		HGI48_RS17220	0.31	-2.7
3,860,795	+		HGI48_RS17220	0.36	-1.5
3,860,811	+		HGI48_RS17220	0.38	+0.4
3,860,812	-		HGI48_RS17220	0.39	+0.1
3,860,821	+		HGI48_RS17220	0.40	-1.1
3,860,821	+		HGI48_RS17220	0.40	-2.2
3,860,821	+		HGI48_RS17220	0.40	-2.5
3,860,821	+				-0.5
3,860,821	+		HGI48_RS17220	0.40	-0.9
3,860,821	+		HGI48_RS17220	0.40	-0.6
3,860,821	+		HGI48_RS17220	0.40	-1.2
3,860,822	-		HGI48_RS17220	0.40	-2.4
3,860,822	-				+0.1
3,860,822	-				+2.5
3,860,822	-		HGI48_RS17220	0.40	+0.1
3,860,822	-		HGI48_RS17220	0.40	-0.1
3,860,822	-		HGI48_RS17220	0.40	+1.0
3,860,881	+		HGI48_RS17220	0.49	+1.1
3,860,881	+		HGI48_RS17220	0.49	+0.1
3,860,881	+		HGI48_RS17220	0.49	+0.1
3,860,881	+		HGI48_RS17220	0.49	+2.1
3,860,881	+		HGI48_RS17220	0.49	+0.5
3,860,882	-		HGI48_RS17220	0.50	+0.8
3,860,886	+		HGI48_RS17220	0.50	+0.0
3,860,887	-		HGI48_RS17220	0.50	+2.0
3,860,936	+		HGI48_RS17220	0.58	-0.3
3,860,982	+		HGI48_RS17220	0.65	-0.1
3,860,982	+		HGI48_RS17220	0.65	-2.8
3,860,982	+		HGI48_RS17220	0.65	-0.1
3,860,982	+		HGI48_RS17220	0.65	-1.2
3,860,982	+		HGI48_RS17220	0.65	-0.2
3,860,982	+		HGI48_RS17220	0.65	+0.5
3,860,982	+		HGI48_RS17220	0.65	-1.3
3,860,982	+		HGI48_RS17220	0.65	-1.2
3,860,982	+		HGI48_RS17220	0.65	-1.2
3,860,982	+				+2.3
3,860,982	+		HGI48_RS17220	0.65	+0.2
3,860,982	+		HGI48_RS17220	0.65	+0.6
3,860,982	+		HGI48_RS17220	0.65	-1.9
3,860,982	+		HGI48_RS17220	0.65	-1.5
3,860,982	+		HGI48_RS17220	0.65	-1.7
3,860,983	-		HGI48_RS17220	0.65	-1.7
3,860,983	-		HGI48_RS17220	0.65	-1.2
3,860,983	-		HGI48_RS17220	0.65	-2.1
3,860,983	-		HGI48_RS17220	0.65	-0.8
3,860,983	-		HGI48_RS17220	0.65	-0.6
3,861,106	-		HGI48_RS17220	0.85	+1.1
3,861,108	+		HGI48_RS17220	0.85	+1.9
3,861,108	+		HGI48_RS17220	0.85	-2.5
3,861,132	+		HGI48_RS17220	0.89	+0.9
3,861,157	-				-1.7
3,861,217	+				+0.7
3,861,413	+				+2.6
3,861,413	+				-0.5
3,861,414	-				+1.3
3,861,415	+				+1.5
3,861,415	+				-0.1
3,861,415	+				-1.2
3,861,415	+				+1.9
3,861,416	-				-0.1
3,861,416	-				-2.1
3,861,418	+				+0.8
3,861,418	+				-0.5
3,861,418	+				+2.3
3,861,418	+				+1.1
3,861,419	-				-0.0
3,861,469	+				-1.9
3,861,469	+				+0.4
3,861,475	+				+1.5
3,861,581	+				-0.1
3,861,581	+				-3.7
3,861,582	-				+1.6
3,861,829	-		HGI48_RS17225	0.23	-1.2
3,861,898	-		HGI48_RS17225	0.28	+0.8
3,862,059	+		HGI48_RS17225	0.41	+1.5
3,862,063	+		HGI48_RS17225	0.41	-0.5
3,862,064	-		HGI48_RS17225	0.41	-2.6
3,862,064	-		HGI48_RS17225	0.41	+1.1
3,862,064	-		HGI48_RS17225	0.41	-1.2
3,862,064	-		HGI48_RS17225	0.41	-0.9
3,862,653	+		HGI48_RS17225	0.86	-0.9
3,862,684	+		HGI48_RS17225	0.88	+1.8
3,862,684	+		HGI48_RS17225	0.88	-1.2
3,862,684	+		HGI48_RS17225	0.88	-2.8
3,862,684	+		HGI48_RS17225	0.88	-1.7
3,862,684	+		HGI48_RS17225	0.88	+2.2
3,862,737	+				+0.2
3,862,737	+				-0.2
3,862,737	+				-0.5
3,862,738	-				-0.9
3,862,738	-				+1.1
3,862,738	-				-1.3
3,862,766	-				+0.1
3,862,766	-				+3.1
3,862,837	+				-1.7
3,862,838	-				+1.6
3,862,854	+				-1.7
3,862,855	-				+0.3
3,862,864	+				-1.2
3,862,865	-				+1.5
3,862,879	+				-1.0
3,862,879	+				+1.5
3,862,880	-				-1.1
3,862,957	+		HGI48_RS17230	0.13	+2.6
3,862,958	-		HGI48_RS17230	0.14	-1.2
3,862,958	-		HGI48_RS17230	0.14	-0.5
3,862,958	-		HGI48_RS17230	0.14	+1.7
3,862,958	-				-0.5
3,863,063	+		HGI48_RS17230	0.64	-0.9
3,863,063	+		HGI48_RS17230	0.64	+0.6
3,863,063	+				-0.5
3,863,063	+		HGI48_RS17230	0.64	-0.9
3,863,064	-		HGI48_RS17230	0.65	+0.6
3,863,064	-		HGI48_RS17230	0.65	+0.7
3,863,064	-		HGI48_RS17230	0.65	+0.2
3,863,064	-		HGI48_RS17230	0.65	+1.3
3,863,093	+		HGI48_RS17230	0.79	-0.1
3,863,093	+		HGI48_RS17230	0.79	-1.2
3,863,093	+		HGI48_RS17230	0.79	-1.0
3,863,094	-				+2.5
3,863,094	-		HGI48_RS17230	0.79	+1.0
3,863,094	-		HGI48_RS17230	0.79	+1.1
3,863,094	-		HGI48_RS17230	0.79	+0.5
3,863,094	-		HGI48_RS17230	0.79	+1.2
3,863,117	+				-2.4
3,863,117	+				+0.9
3,863,118	-				+1.1
3,863,219	+				-0.3
3,863,220	-				+1.7
3,863,225	+				+1.9
3,863,225	+				-0.9
3,863,225	+				+1.5
3,863,225	+				-1.5
3,863,225	+				+1.4
3,863,225	+				-0.2
3,863,226	-				-0.0
3,863,226	-				+0.1
3,863,226	-				-2.1
3,863,226	-				-0.5
3,863,241	+				+0.7
3,863,241	+				+1.1
3,863,241	+				+3.5
3,863,241	+				-1.5
3,863,242	-				+1.4
3,863,242	-				+2.4
3,863,242	-				-1.2
3,863,259	+				+0.1
3,863,259	+				+1.8
3,863,259	+				-0.5
3,863,260	-				+0.4
3,863,260	-				-0.8
3,863,271	-				+1.1
3,863,278	-				-1.2
3,863,278	-				-1.7
3,863,288	+				+0.1
3,863,289	-				-1.5
3,863,295	+				-0.9
3,863,310	+				-2.5
3,863,310	+				-0.5
3,863,310	+				+2.4
3,863,310	+				+0.2
3,863,310	+				+0.4
3,863,310	+				-1.5
3,863,310	+				+0.2
3,863,310	+				-1.7
3,863,310	+				+0.5
3,863,311	-				+0.5
3,863,311	-				+0.1
3,863,311	-				+1.0
3,863,311	-				+1.1
3,863,311	-				-0.5
3,863,313	+				+1.6
3,863,313	+				-2.5
3,863,314	-				+1.7
3,863,331	+				-1.5
3,863,332	-				+1.0
3,863,358	+				+1.1
3,863,358	+				-2.1
3,863,358	+				+0.6
3,863,379	+				+2.3
3,863,379	+				+0.6
3,863,393	-				-1.2
3,863,422	+				+0.8
3,863,429	+				+0.6
3,863,460	+				-1.5
3,863,471	+				+1.4
3,863,471	+				+0.2
3,863,472	-				+3.2
3,863,472	-				-1.3
3,863,478	+				+0.2
3,863,478	+				-2.4
3,863,521	+				+1.1
3,863,522	-				-3.1
3,863,574	+				-0.9
3,863,574	+				+0.1
3,863,574	+				+4.2
3,863,574	+				+0.5
3,863,575	-				+0.4
3,863,575	-				-2.1
3,863,624	+				-1.2
3,863,625	-				-0.2
3,863,625	-				+1.5
3,863,625	-				+1.9
3,863,717	+				-2.2
3,863,717	+				+0.9
3,863,717	+				-0.5
3,863,718	-				+0.4
3,863,718	-				-1.9
3,863,718	-				+0.9