Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15785

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,550,929	-				-0.6
3,550,970	+				+0.4
3,550,982	+				-1.6
3,550,983	-				-0.2
3,550,983	-				-0.6
3,550,983	-				-1.8
3,550,983	-				+2.8
3,550,983	-				+0.0
3,551,225	+		HGI48_RS15780	0.33	+0.7
3,551,225	+		HGI48_RS15780	0.33	-1.3
3,551,225	+		HGI48_RS15780	0.33	+1.0
3,551,225	+				-0.6
3,551,225	+		HGI48_RS15780	0.33	+0.7
3,551,225	+		HGI48_RS15780	0.33	-0.4
3,551,225	+				+1.0
3,551,225	+		HGI48_RS15780	0.33	-1.3
3,551,225	+		HGI48_RS15780	0.33	-1.0
3,551,225	+		HGI48_RS15780	0.33	+0.0
3,551,225	+		HGI48_RS15780	0.33	-0.6
3,551,225	+		HGI48_RS15780	0.33	-1.6
3,551,225	+		HGI48_RS15780	0.33	+1.0
3,551,225	+		HGI48_RS15780	0.33	-2.5
3,551,225	+		HGI48_RS15780	0.33	+1.3
3,551,225	+		HGI48_RS15780	0.33	+2.3
3,551,225	+		HGI48_RS15780	0.33	+0.2
3,551,225	+		HGI48_RS15780	0.33	-1.6
3,551,225	+		HGI48_RS15780	0.33	-0.9
3,551,225	+		HGI48_RS15780	0.33	+0.3
3,551,225	+		HGI48_RS15780	0.33	+0.7
3,551,225	+		HGI48_RS15780	0.33	+2.7
3,551,225	+		HGI48_RS15780	0.33	+1.4
3,551,225	+		HGI48_RS15780	0.33	-0.1
3,551,225	+		HGI48_RS15780	0.33	-1.6
3,551,226	-				-0.6
3,551,226	-				+3.4
3,551,226	-		HGI48_RS15780	0.33	+1.3
3,551,226	-		HGI48_RS15780	0.33	-2.6
3,551,226	-		HGI48_RS15780	0.33	+0.3
3,551,226	-		HGI48_RS15780	0.33	-1.3
3,551,226	-		HGI48_RS15780	0.33	-1.3
3,551,226	-		HGI48_RS15780	0.33	+1.0
3,551,226	-		HGI48_RS15780	0.33	-2.2
3,551,226	-		HGI48_RS15780	0.33	+0.9
3,551,226	-		HGI48_RS15780	0.33	-1.6
3,551,226	-		HGI48_RS15780	0.33	+2.4
3,551,226	-		HGI48_RS15780	0.33	+0.2
3,551,251	+		HGI48_RS15780	0.36	+0.1
3,551,375	+		HGI48_RS15780	0.51	-1.3
3,551,560	-		HGI48_RS15780	0.72	+1.1
3,551,560	-		HGI48_RS15780	0.72	-1.6
3,551,567	+		HGI48_RS15780	0.73	-0.5
3,551,567	+		HGI48_RS15780	0.73	-1.0
3,551,568	-		HGI48_RS15780	0.73	+1.1
3,551,568	-		HGI48_RS15780	0.73	+1.3
3,551,568	-				+1.6
3,551,568	-		HGI48_RS15780	0.73	-1.6
3,551,569	+		HGI48_RS15780	0.73	-2.5
3,551,570	-		HGI48_RS15780	0.73	-1.0
3,551,570	-		HGI48_RS15780	0.73	+1.1
3,551,621	+		HGI48_RS15780	0.80	-1.3
3,551,622	-		HGI48_RS15780	0.80	-0.4
3,551,622	-		HGI48_RS15780	0.80	+1.2
3,551,651	+		HGI48_RS15780	0.83	-1.8
3,551,652	-		HGI48_RS15780	0.83	+0.3
3,551,710	+				-1.0
3,551,710	+				-2.3
3,551,711	-				+0.7
3,551,741	+				-2.3
3,551,742	-				+1.2
3,551,810	-				+0.2
3,551,833	+				-2.0
3,551,833	+				-0.6
3,551,833	+				+1.8
3,551,833	+				+0.5
3,551,833	+				-1.0
3,551,834	-				-1.8
3,551,834	-				+0.5
3,551,834	-				-2.0
3,551,834	-				+0.3
3,551,872	+				+2.0
3,551,872	+				+5.5
3,551,873	-				+0.7
3,551,930	-				+0.4
3,551,979	-		HGI48_RS15785	0.11	-2.8
3,551,979	-		HGI48_RS15785	0.11	+2.4
3,551,980	+		HGI48_RS15785	0.11	-0.1
3,551,980	+		HGI48_RS15785	0.11	-1.3
3,551,980	+				-0.6
3,551,980	+		HGI48_RS15785	0.11	+1.6
3,551,980	+		HGI48_RS15785	0.11	-1.2
3,551,981	-				+1.0
3,551,981	-		HGI48_RS15785	0.11	+1.0
3,551,981	-		HGI48_RS15785	0.11	+1.7
3,551,981	-		HGI48_RS15785	0.11	-0.3
3,552,022	+		HGI48_RS15785	0.14	-2.0
3,552,022	+		HGI48_RS15785	0.14	+1.2
3,552,022	+		HGI48_RS15785	0.14	-2.0
3,552,022	+		HGI48_RS15785	0.14	+1.3
3,552,022	+		HGI48_RS15785	0.14	+1.9
3,552,022	+				+3.1
3,552,022	+		HGI48_RS15785	0.14	-0.2
3,552,022	+		HGI48_RS15785	0.14	-1.0
3,552,022	+		HGI48_RS15785	0.14	+1.7
3,552,022	+		HGI48_RS15785	0.14	-2.0
3,552,022	+		HGI48_RS15785	0.14	-0.3
3,552,023	-		HGI48_RS15785	0.14	-1.0
3,552,023	-		HGI48_RS15785	0.14	+1.0
3,552,023	-		HGI48_RS15785	0.14	+0.0
3,552,023	-		HGI48_RS15785	0.14	+2.1
3,552,023	-		HGI48_RS15785	0.14	+0.4
3,552,023	-		HGI48_RS15785	0.14	-2.2
3,552,023	-		HGI48_RS15785	0.14	-1.8
3,552,122	+		HGI48_RS15785	0.21	-1.3
3,552,123	-		HGI48_RS15785	0.21	+1.5
3,552,173	+		HGI48_RS15785	0.24	+0.0
3,552,173	+		HGI48_RS15785	0.24	-1.3
3,552,174	-		HGI48_RS15785	0.24	+1.4
3,552,174	-		HGI48_RS15785	0.24	-2.2
3,552,179	+		HGI48_RS15785	0.24	-1.3
3,552,195	-		HGI48_RS15785	0.25	-3.2
3,552,310	+		HGI48_RS15785	0.33	+0.4
3,552,353	+		HGI48_RS15785	0.36	+0.3
3,552,354	-		HGI48_RS15785	0.36	+0.1
3,552,440	-		HGI48_RS15785	0.42	-0.9
3,552,529	+		HGI48_RS15785	0.47	+0.2
3,552,529	+		HGI48_RS15785	0.47	+1.0
3,552,530	-		HGI48_RS15785	0.48	+0.3
3,552,546	-		HGI48_RS15785	0.49	+0.8
3,552,547	+				-0.6
3,552,547	+		HGI48_RS15785	0.49	-1.6
3,552,547	+		HGI48_RS15785	0.49	-1.6
3,552,548	-				-0.6
3,552,548	-		HGI48_RS15785	0.49	-0.6
3,552,548	-		HGI48_RS15785	0.49	+0.3
3,552,548	-		HGI48_RS15785	0.49	+1.7
3,552,548	-		HGI48_RS15785	0.49	+1.0
3,552,576	-		HGI48_RS15785	0.51	+0.5
3,552,769	-		HGI48_RS15785	0.63	+1.4
3,552,769	-		HGI48_RS15785	0.63	+0.4
3,552,769	-		HGI48_RS15785	0.63	-1.0
3,552,769	-		HGI48_RS15785	0.63	+1.3
3,552,769	-		HGI48_RS15785	0.63	-1.9
3,552,769	-				+2.7
3,552,841	+		HGI48_RS15785	0.68	-0.6
3,552,841	+		HGI48_RS15785	0.68	+0.9
3,552,842	-		HGI48_RS15785	0.68	+1.0
3,552,842	-		HGI48_RS15785	0.68	-0.6
3,552,901	+				+2.4
3,552,901	+		HGI48_RS15785	0.72	-2.2
3,552,924	-		HGI48_RS15785	0.74	-1.8
3,552,926	+		HGI48_RS15785	0.74	-1.3
3,552,926	+		HGI48_RS15785	0.74	-1.0
3,552,926	+		HGI48_RS15785	0.74	-1.6
3,552,926	+		HGI48_RS15785	0.74	-2.2
3,552,927	-		HGI48_RS15785	0.74	-2.5
3,552,927	-		HGI48_RS15785	0.74	-0.6
3,552,927	-		HGI48_RS15785	0.74	-1.3
3,552,927	-		HGI48_RS15785	0.74	+0.3
3,552,927	-		HGI48_RS15785	0.74	-0.4
3,552,927	-		HGI48_RS15785	0.74	+1.6
3,552,928	+		HGI48_RS15785	0.74	+0.0
3,552,929	-		HGI48_RS15785	0.74	-1.8
3,552,960	+		HGI48_RS15785	0.76	-0.2
3,552,960	+		HGI48_RS15785	0.76	-0.2
3,552,961	-		HGI48_RS15785	0.76	-0.1
3,553,039	+		HGI48_RS15785	0.81	-1.8
3,553,040	-				+0.0
3,553,040	-		HGI48_RS15785	0.81	-0.5
3,553,068	+				+3.0
3,553,068	+		HGI48_RS15785	0.83	+0.0
3,553,068	+		HGI48_RS15785	0.83	+3.9
3,553,068	+		HGI48_RS15785	0.83	+1.0
3,553,069	-		HGI48_RS15785	0.83	+0.0
3,553,069	-		HGI48_RS15785	0.83	+1.0
3,553,071	+		HGI48_RS15785	0.83	+1.3
3,553,072	-		HGI48_RS15785	0.83	+1.0
3,553,073	+		HGI48_RS15785	0.83	-2.0
3,553,073	+				-0.6
3,553,141	+		HGI48_RS15785	0.88	-1.6
3,553,141	+		HGI48_RS15785	0.88	+0.0
3,553,172	+		HGI48_RS15785	0.90	-1.0
3,553,172	+		HGI48_RS15785	0.90	-1.8
3,553,172	+		HGI48_RS15785	0.90	-1.0
3,553,172	+		HGI48_RS15785	0.90	-1.3
3,553,173	-		HGI48_RS15785	0.90	+1.0
3,553,173	-		HGI48_RS15785	0.90	+1.1
3,553,293	+				+0.2
3,553,294	-				-1.0
3,553,296	+				+0.0
3,553,297	-				-1.3
3,553,297	-				+1.4
3,553,299	+				+0.7
3,553,302	+				-1.8
3,553,302	+				-1.0
3,553,303	-				+1.1
3,553,311	+				-3.9
3,553,311	+				+2.5
3,553,311	+				-0.7
3,553,313	+				-1.6
3,553,328	+				+0.8
3,553,400	+				+3.5
3,553,400	+				-0.4
3,553,400	+				+0.7
3,553,400	+				-2.0
3,553,400	+				-0.9
3,553,400	+				+1.7
3,553,400	+				+1.7
3,553,401	-				+0.8
3,553,401	-				-2.9
3,553,401	-				+0.4
3,553,401	-				+0.2
3,553,401	-				-0.7
3,553,401	-				+1.0
3,553,446	+				+0.1
3,553,447	-				-3.1
3,553,493	+				-1.3
3,553,493	+				+0.3
3,553,494	-				-1.0
3,553,499	+				-1.0
3,553,513	+				+0.9
3,553,513	+				+1.3
3,553,525	+				-1.0
3,553,525	+				-2.3
3,553,545	+				+1.8
3,553,552	+				-0.0
3,553,553	-				-0.6
3,553,568	-				-1.3
3,553,568	-				-1.0
3,553,583	-				+2.2
3,553,583	-				+1.8
3,553,592	-				+1.4
3,553,595	+				-3.4
3,553,603	+				+0.4
3,553,603	+				-1.0
3,553,603	+				+0.3
3,553,603	+				-0.3
3,553,688	+				+1.6
3,553,860	-				+1.4
3,553,891	-				+1.1
3,553,900	+				-0.2
3,553,901	-				+2.3
3,553,901	-				-0.6
3,553,945	+				+4.2
3,553,986	+				-2.3
3,553,987	-				-0.4
3,554,001	+				+0.7
3,554,001	+				+0.1
3,554,056	+				+1.5
3,554,056	+				+1.8
3,554,057	-				+2.5
3,554,089	-				+1.7
3,554,089	-				+2.3
3,554,089	-				+1.4
3,554,104	+				-0.6
3,554,183	+		HGI48_RS15790	0.10	-1.6
3,554,183	+		HGI48_RS15790	0.10	-2.5
3,554,243	+		HGI48_RS15790	0.18	+2.2
3,554,243	+		HGI48_RS15790	0.18	+1.0
3,554,243	+		HGI48_RS15790	0.18	-1.3
3,554,243	+		HGI48_RS15790	0.18	+2.4
3,554,244	-		HGI48_RS15790	0.18	-1.6
3,554,244	-		HGI48_RS15790	0.18	+3.3
3,554,244	-		HGI48_RS15790	0.18	-0.0
3,554,244	-		HGI48_RS15790	0.18	-1.6
3,554,244	-		HGI48_RS15790	0.18	+1.0
3,554,244	-		HGI48_RS15790	0.18	-2.6
3,554,248	+				+1.6
3,554,248	+		HGI48_RS15790	0.18	-0.3
3,554,248	+		HGI48_RS15790	0.18	-2.8
3,554,249	-		HGI48_RS15790	0.18	-0.2
3,554,249	-		HGI48_RS15790	0.18	+0.4
3,554,249	-		HGI48_RS15790	0.18	-0.1
3,554,249	-		HGI48_RS15790	0.18	-1.3
3,554,312	+		HGI48_RS15790	0.26	+1.1
3,554,312	+		HGI48_RS15790	0.26	+0.5
3,554,312	+		HGI48_RS15790	0.26	-1.6
3,554,312	+		HGI48_RS15790	0.26	-0.3
3,554,313	-				+3.6
3,554,313	-		HGI48_RS15790	0.27	+0.7