Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15010

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,375,548	+		HGI48_RS15000	0.79	-2.1
3,375,563	+		HGI48_RS15000	0.80	-1.1
3,375,651	-		HGI48_RS15000	0.87	+0.6
3,375,688	+				-0.2
3,375,689	-				+1.7
3,375,689	-				+1.2
3,375,723	-				-0.7
3,375,775	+				-2.4
3,375,824	+				+0.1
3,375,826	+				-2.9
3,375,826	+				-1.4
3,375,859	-				-2.8
3,375,867	+				-1.0
3,375,885	+				-1.9
3,375,931	+				+3.2
3,375,958	+				-1.8
3,375,959	-				-3.9
3,375,959	-				+2.1
3,375,959	-				+2.1
3,375,972	+				+0.9
3,376,015	+				-1.6
3,376,074	+		HGI48_RS15005	0.28	+2.4
3,376,158	+		HGI48_RS15005	0.55	+0.4
3,376,159	-		HGI48_RS15005	0.55	-1.9
3,376,240	+		HGI48_RS15005	0.81	+1.9
3,376,279	-				-1.4
3,376,305	+				+0.8
3,376,305	+				-1.5
3,376,306	-				-1.7
3,376,306	-				-0.7
3,376,306	-				-0.7
3,376,324	+				+0.6
3,376,451	+				-2.5
3,376,493	+				-1.4
3,376,493	+				-2.1
3,376,494	-				-1.1
3,376,534	+				-1.9
3,376,550	+				-1.1
3,376,550	+				-3.5
3,376,551	-				-4.8
3,376,572	-				-1.1
3,376,693	+		HGI48_RS15010	0.14	-4.1
3,376,693	+		HGI48_RS15010	0.14	-1.1
3,376,694	-		HGI48_RS15010	0.14	-1.9
3,376,747	+		HGI48_RS15010	0.16	-1.9
3,376,748	-		HGI48_RS15010	0.16	-1.1
3,376,748	-		HGI48_RS15010	0.16	-3.1
3,376,748	-		HGI48_RS15010	0.16	-1.7
3,376,748	-		HGI48_RS15010	0.16	-3.1
3,376,762	+		HGI48_RS15010	0.17	-0.2
3,376,762	+		HGI48_RS15010	0.17	-1.4
3,376,871	+		HGI48_RS15010	0.22	-1.4
3,376,872	-		HGI48_RS15010	0.22	-0.4
3,376,873	+		HGI48_RS15010	0.22	-2.1
3,376,873	+				-0.7
3,376,873	+		HGI48_RS15010	0.22	-1.7
3,376,874	-		HGI48_RS15010	0.23	-1.9
3,376,990	+		HGI48_RS15010	0.28	-0.3
3,376,990	+				-0.7
3,377,062	+		HGI48_RS15010	0.32	-3.3
3,377,062	+		HGI48_RS15010	0.32	-2.1
3,377,062	+		HGI48_RS15010	0.32	+0.1
3,377,063	-		HGI48_RS15010	0.32	-1.1
3,377,063	-		HGI48_RS15010	0.32	-1.7
3,377,063	-		HGI48_RS15010	0.32	+2.3
3,377,063	-				-0.7
3,377,063	-		HGI48_RS15010	0.32	+0.5
3,377,079	+		HGI48_RS15010	0.33	-2.7
3,377,079	+				-0.1
3,377,080	-		HGI48_RS15010	0.33	-1.7
3,377,080	-		HGI48_RS15010	0.33	+0.7
3,377,080	-		HGI48_RS15010	0.33	-2.1
3,377,180	-		HGI48_RS15010	0.37	+0.9
3,377,417	-		HGI48_RS15010	0.49	-1.0
3,377,417	-		HGI48_RS15010	0.49	-2.2
3,377,452	-		HGI48_RS15010	0.51	-0.2
3,377,465	+		HGI48_RS15010	0.51	-2.7
3,377,465	+		HGI48_RS15010	0.51	-1.9
3,377,465	+		HGI48_RS15010	0.51	+0.5
3,377,465	+		HGI48_RS15010	0.51	-2.2
3,377,466	-		HGI48_RS15010	0.51	+2.1
3,377,466	-		HGI48_RS15010	0.51	-1.2
3,377,466	-		HGI48_RS15010	0.51	+1.3
3,377,466	-		HGI48_RS15010	0.51	-1.9
3,377,471	+		HGI48_RS15010	0.52	-2.2
3,377,588	+		HGI48_RS15010	0.57	-1.7
3,377,589	-		HGI48_RS15010	0.57	-1.7
3,377,589	-		HGI48_RS15010	0.57	-2.4
3,377,589	-		HGI48_RS15010	0.57	-1.4
3,377,589	-		HGI48_RS15010	0.57	-1.0
3,377,590	+		HGI48_RS15010	0.57	-1.1
3,377,590	+		HGI48_RS15010	0.57	+1.9
3,377,591	-		HGI48_RS15010	0.57	-2.2
3,377,591	-		HGI48_RS15010	0.57	-4.3
3,377,651	+		HGI48_RS15010	0.60	-0.1
3,377,681	-		HGI48_RS15010	0.62	-3.0
3,377,687	-		HGI48_RS15010	0.62	+0.5
3,377,698	+		HGI48_RS15010	0.63	-1.1
3,377,698	+		HGI48_RS15010	0.63	+1.1
3,377,699	-		HGI48_RS15010	0.63	-1.9
3,377,792	+				-0.1
3,377,792	+		HGI48_RS15010	0.67	+1.7
3,377,875	+		HGI48_RS15010	0.71	-3.0
3,377,875	+		HGI48_RS15010	0.71	-0.7
3,377,875	+		HGI48_RS15010	0.71	-1.3
3,377,876	-		HGI48_RS15010	0.71	-1.1
3,377,876	-		HGI48_RS15010	0.71	-2.2
3,377,876	-		HGI48_RS15010	0.71	-0.2
3,377,876	-				-0.7
3,377,880	-		HGI48_RS15010	0.71	-4.0
3,377,912	+		HGI48_RS15010	0.73	+0.3
3,377,912	+				-0.7
3,378,227	+		HGI48_RS15010	0.88	-3.0
3,378,228	-		HGI48_RS15010	0.88	-1.5
3,378,228	-		HGI48_RS15010	0.88	-0.5
3,378,335	+				-2.2
3,378,335	+				-0.1
3,378,336	-				-0.7
3,378,336	-				-0.4
3,378,409	+				-0.7
3,378,423	+				-1.4
3,378,423	+				-1.4
3,378,423	+				-0.3
3,378,423	+				-0.1
3,378,423	+				-0.7
3,378,424	-				-1.1
3,378,424	-				+1.9
3,378,424	-				-1.7
3,378,424	-				-2.2
3,378,424	-				-0.7
3,378,424	-				-4.1
3,378,424	-				-1.4
3,378,468	-				-1.7
3,378,479	-				-1.4
3,378,481	+				-2.1
3,378,501	+				-0.8
3,378,502	-				+2.4
3,378,503	+				-2.2
3,378,503	+				-1.4
3,378,503	+				-1.1
3,378,503	+				-1.5
3,378,504	-				-2.1
3,378,542	+				-2.5
3,378,556	-				-2.2
3,378,556	-				+0.1
3,378,590	+				+0.3
3,378,591	-				+1.3
3,378,603	-				-0.2
3,378,606	+				-1.7
3,378,606	+				-1.4
3,378,611	-				-1.9
3,378,645	+				-0.3
3,378,645	+				-0.7
3,378,645	+				-0.4
3,378,645	+				-0.1
3,378,645	+				+0.5
3,378,645	+				-0.9
3,378,697	-				-2.1
3,378,698	+				-1.1
3,378,698	+				-1.4
3,378,698	+				-4.2
3,378,698	+				-1.7
3,378,726	+		HGI48_RS15015	0.10	+2.5
3,378,762	-		HGI48_RS15015	0.13	+0.9
3,378,800	-		HGI48_RS15015	0.17	+1.4
3,378,800	-				-0.7
3,378,841	+		HGI48_RS15015	0.20	-1.4
3,378,841	+		HGI48_RS15015	0.20	-3.5
3,378,842	-		HGI48_RS15015	0.20	+1.0
3,378,842	-		HGI48_RS15015	0.20	+1.2
3,378,842	-		HGI48_RS15015	0.20	-1.4
3,378,959	+		HGI48_RS15015	0.30	+0.4
3,378,960	-		HGI48_RS15015	0.30	-1.9
3,379,016	+		HGI48_RS15015	0.35	-0.1
3,379,022	+		HGI48_RS15015	0.35	-1.7
3,379,022	+		HGI48_RS15015	0.35	-2.5
3,379,022	+		HGI48_RS15015	0.35	+0.8
3,379,023	-		HGI48_RS15015	0.35	-1.4
3,379,023	-		HGI48_RS15015	0.35	-0.6
3,379,023	-		HGI48_RS15015	0.35	+1.2
3,379,273	+		HGI48_RS15015	0.56	-1.7
3,379,274	-		HGI48_RS15015	0.56	-1.9
3,379,274	-		HGI48_RS15015	0.56	-0.6
3,379,280	-				-0.1
3,379,332	+		HGI48_RS15015	0.61	-2.7
3,379,333	-		HGI48_RS15015	0.61	-0.3
3,379,334	+		HGI48_RS15015	0.61	-0.1
3,379,334	+		HGI48_RS15015	0.61	+1.2
3,379,334	+		HGI48_RS15015	0.61	-1.8
3,379,334	+		HGI48_RS15015	0.61	-0.3
3,379,334	+		HGI48_RS15015	0.61	-0.1
3,379,334	+		HGI48_RS15015	0.61	-1.2
3,379,334	+		HGI48_RS15015	0.61	-2.8
3,379,334	+		HGI48_RS15015	0.61	-2.2
3,379,334	+		HGI48_RS15015	0.61	-2.4
3,379,334	+		HGI48_RS15015	0.61	-2.5
3,379,335	-		HGI48_RS15015	0.61	+0.2
3,379,335	-		HGI48_RS15015	0.61	-1.9
3,379,335	-				-0.7
3,379,335	-		HGI48_RS15015	0.61	+1.1
3,379,335	-		HGI48_RS15015	0.61	+0.2
3,379,335	-				+2.2
3,379,338	+		HGI48_RS15015	0.61	-2.5
3,379,338	+		HGI48_RS15015	0.61	-1.7
3,379,338	+		HGI48_RS15015	0.61	-2.5
3,379,338	+		HGI48_RS15015	0.61	-0.3
3,379,339	-				-0.7
3,379,339	-		HGI48_RS15015	0.61	-2.1
3,379,339	-		HGI48_RS15015	0.61	-1.4
3,379,339	-				-0.7
3,379,339	-		HGI48_RS15015	0.61	+1.3
3,379,365	-		HGI48_RS15015	0.64	-1.1
3,379,444	+		HGI48_RS15015	0.70	-2.4
3,379,445	-		HGI48_RS15015	0.70	-2.2