Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14825

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,336,562	-		HGI48_RS14820	0.16	-0.4
3,336,573	+		HGI48_RS14820	0.17	+1.8
3,336,574	-		HGI48_RS14820	0.17	-2.7
3,336,602	+		HGI48_RS14820	0.20	-2.3
3,336,602	+		HGI48_RS14820	0.20	-1.1
3,336,606	+		HGI48_RS14820	0.20	+1.4
3,336,639	+		HGI48_RS14820	0.24	+1.5
3,336,639	+				+0.9
3,336,639	+		HGI48_RS14820	0.24	+1.4
3,336,639	+		HGI48_RS14820	0.24	+1.0
3,336,639	+		HGI48_RS14820	0.24	-1.4
3,336,639	+		HGI48_RS14820	0.24	-1.7
3,336,639	+		HGI48_RS14820	0.24	+1.3
3,336,639	+		HGI48_RS14820	0.24	+0.2
3,336,639	+		HGI48_RS14820	0.24	-1.1
3,336,640	-		HGI48_RS14820	0.24	-1.4
3,336,640	-		HGI48_RS14820	0.24	-1.7
3,336,640	-		HGI48_RS14820	0.24	+0.5
3,336,643	+		HGI48_RS14820	0.24	-1.7
3,336,643	+		HGI48_RS14820	0.24	-1.7
3,336,644	-		HGI48_RS14820	0.24	-1.9
3,336,678	+		HGI48_RS14820	0.27	+2.1
3,336,678	+		HGI48_RS14820	0.27	+1.4
3,336,678	+				-0.1
3,336,744	+		HGI48_RS14820	0.34	-0.7
3,336,744	+				+2.9
3,336,744	+		HGI48_RS14820	0.34	-1.9
3,336,744	+		HGI48_RS14820	0.34	-0.7
3,336,744	+		HGI48_RS14820	0.34	+0.9
3,336,745	-		HGI48_RS14820	0.34	-0.1
3,336,745	-		HGI48_RS14820	0.34	-1.4
3,336,745	-		HGI48_RS14820	0.34	+1.8
3,336,745	-		HGI48_RS14820	0.34	-1.7
3,336,789	+		HGI48_RS14820	0.38	-0.5
3,336,790	-		HGI48_RS14820	0.38	+1.1
3,336,790	-		HGI48_RS14820	0.38	+0.9
3,336,836	+		HGI48_RS14820	0.43	+1.7
3,336,859	+		HGI48_RS14820	0.45	-1.1
3,336,891	+		HGI48_RS14820	0.48	-1.9
3,336,935	+				-0.7
3,337,001	+		HGI48_RS14820	0.59	-2.4
3,337,047	-		HGI48_RS14820	0.63	+0.9
3,337,062	-		HGI48_RS14820	0.65	+0.5
3,337,063	+		HGI48_RS14820	0.65	+2.1
3,337,064	-		HGI48_RS14820	0.65	-2.3
3,337,165	+		HGI48_RS14820	0.75	+1.4
3,337,165	+		HGI48_RS14820	0.75	+2.1
3,337,165	+		HGI48_RS14820	0.75	-1.1
3,337,165	+		HGI48_RS14820	0.75	+0.3
3,337,165	+		HGI48_RS14820	0.75	-2.7
3,337,165	+				+3.7
3,337,165	+		HGI48_RS14820	0.75	-1.1
3,337,165	+		HGI48_RS14820	0.75	-2.3
3,337,166	-		HGI48_RS14820	0.75	+0.2
3,337,166	-		HGI48_RS14820	0.75	-1.7
3,337,166	-		HGI48_RS14820	0.75	-1.1
3,337,227	+				-0.7
3,337,227	+		HGI48_RS14820	0.81	-3.0
3,337,227	+				-0.7
3,337,227	+		HGI48_RS14820	0.81	-1.7
3,337,227	+				+3.4
3,337,228	-		HGI48_RS14820	0.81	-1.1
3,337,228	-		HGI48_RS14820	0.81	-0.8
3,337,229	+		HGI48_RS14820	0.81	-2.1
3,337,229	+		HGI48_RS14820	0.81	-1.7
3,337,229	+		HGI48_RS14820	0.81	-1.9
3,337,229	+		HGI48_RS14820	0.81	+1.8
3,337,229	+		HGI48_RS14820	0.81	-0.1
3,337,230	-		HGI48_RS14820	0.81	+0.2
3,337,230	-		HGI48_RS14820	0.81	+1.6
3,337,243	+		HGI48_RS14820	0.82	-1.4
3,337,243	+		HGI48_RS14820	0.82	-2.1
3,337,354	+				+1.9
3,337,378	-				-1.7
3,337,417	+				+0.8
3,337,417	+				-3.1
3,337,417	+				-0.2
3,337,417	+				-1.2
3,337,417	+				-1.1
3,337,417	+				+1.7
3,337,508	-				+0.0
3,337,519	-				-1.9
3,337,530	+				-2.1
3,337,530	+				+2.3
3,337,530	+				-0.8
3,337,531	-				-1.7
3,337,531	-				+0.3
3,337,531	-				-1.1
3,337,531	-				-0.1
3,337,532	+				-0.0
3,337,532	+				+0.4
3,337,533	-				-0.1
3,337,533	-				-1.4
3,337,533	-				-0.1
3,337,533	-				-1.7
3,337,709	-		HGI48_RS14825	0.32	-2.4
3,337,732	+		HGI48_RS14825	0.37	-0.3
3,337,733	-		HGI48_RS14825	0.38	+1.0
3,337,748	+		HGI48_RS14825	0.41	-0.5
3,337,749	-		HGI48_RS14825	0.41	+2.2
3,337,793	+		HGI48_RS14825	0.51	-1.7
3,337,793	+		HGI48_RS14825	0.51	-1.1
3,337,793	+		HGI48_RS14825	0.51	+0.3
3,337,794	-		HGI48_RS14825	0.51	-0.2
3,337,794	-		HGI48_RS14825	0.51	-0.8
3,337,880	+		HGI48_RS14825	0.70	-0.2
3,337,880	+				-0.1
3,337,880	+				-0.7
3,337,881	-		HGI48_RS14825	0.70	+0.7
3,337,881	-				-0.1
3,337,884	+		HGI48_RS14825	0.71	+0.8
3,337,884	+		HGI48_RS14825	0.71	+1.3
3,337,896	+		HGI48_RS14825	0.73	+1.1
3,337,896	+		HGI48_RS14825	0.73	+0.9
3,337,896	+		HGI48_RS14825	0.73	-0.8
3,337,896	+		HGI48_RS14825	0.73	+0.5
3,337,896	+		HGI48_RS14825	0.73	+0.8
3,337,896	+		HGI48_RS14825	0.73	-1.9
3,337,896	+		HGI48_RS14825	0.73	-1.4
3,337,896	+		HGI48_RS14825	0.73	+1.6
3,337,897	-		HGI48_RS14825	0.73	-2.9
3,337,897	-		HGI48_RS14825	0.73	+2.0
3,337,897	-		HGI48_RS14825	0.73	+0.0
3,337,897	-		HGI48_RS14825	0.73	+1.5
3,337,899	-		HGI48_RS14825	0.74	-1.1
3,337,899	-		HGI48_RS14825	0.74	-1.4
3,337,945	-		HGI48_RS14825	0.84	+1.3
3,337,946	+		HGI48_RS14825	0.84	+2.0
3,337,977	-				-1.1
3,337,983	+				-1.4
3,337,983	+				-0.1
3,337,994	-				+2.6
3,338,050	-				-1.4
3,338,226	+				+2.1
3,338,282	-				-3.4
3,338,314	+				-2.1
3,338,314	+				+0.8
3,338,314	+				-0.2
3,338,315	-				+2.5
3,338,322	-				+0.9
3,338,333	+				-0.7
3,338,334	-				-0.1
3,338,374	+				-1.9
3,338,374	+				-2.8
3,338,390	-				+1.1
3,338,410	+				-1.4
3,338,411	-				-2.1
3,338,411	-				+3.5
3,338,444	+				+1.2
3,338,444	+				-0.3
3,338,445	-				-1.9
3,338,445	-				+0.2
3,338,445	-				-1.4
3,338,454	+				-2.3
3,338,454	+				+0.7
3,338,454	+				-2.4
3,338,454	+				-0.7
3,338,455	-				+0.3
3,338,455	-				-1.4
3,338,458	+				+0.1
3,338,458	+				+1.1
3,338,458	+				-0.7
3,338,459	-				-1.2
3,338,459	-				-1.9
3,338,459	-				+1.6
3,338,459	-				-1.9
3,338,459	-				+0.7
3,338,471	+				+2.2
3,338,472	-				-1.9
3,338,472	-				+0.7
3,338,483	+				+1.8
3,338,518	+				-3.0
3,338,551	+				+1.3
3,338,552	-				-1.1
3,338,552	-				+0.9
3,338,651	-				+1.4
3,338,651	-				+1.9
3,338,655	+				+1.4
3,338,655	+				+1.4
3,338,655	+				-2.1
3,338,656	-				+0.6
3,338,695	+				-0.7
3,338,695	+				+2.8
3,338,699	+				+0.9
3,338,699	+				+0.6
3,338,700	-				+1.1
3,338,700	-				-1.4
3,338,742	-		HGI48_RS14830	0.11	-1.7
3,338,790	+		HGI48_RS14830	0.12	-1.1
3,338,792	+				+2.2
3,338,793	-		HGI48_RS14830	0.12	-1.3
3,338,793	-				-0.7
3,338,805	+		HGI48_RS14830	0.12	-0.4
3,338,806	-				-0.7
3,338,806	-		HGI48_RS14830	0.12	+0.8
3,338,855	+		HGI48_RS14830	0.13	-2.1
3,338,870	+		HGI48_RS14830	0.13	-1.7
3,338,916	+		HGI48_RS14830	0.14	+1.0
3,338,917	-		HGI48_RS14830	0.14	+0.7
3,338,942	-		HGI48_RS14830	0.14	+0.6
3,338,947	+		HGI48_RS14830	0.14	-1.4
3,338,948	-		HGI48_RS14830	0.14	-1.0
3,338,954	+		HGI48_RS14830	0.15	-1.7
3,338,954	+		HGI48_RS14830	0.15	-1.9
3,338,955	-		HGI48_RS14830	0.15	-0.1
3,338,957	-				+0.3
3,338,957	-		HGI48_RS14830	0.15	+0.8
3,338,958	+		HGI48_RS14830	0.15	+0.1
3,338,958	+		HGI48_RS14830	0.15	+0.5
3,338,959	-		HGI48_RS14830	0.15	-1.4
3,338,959	-		HGI48_RS14830	0.15	-3.1
3,338,962	+		HGI48_RS14830	0.15	-2.7
3,338,962	+		HGI48_RS14830	0.15	-1.7
3,338,962	+		HGI48_RS14830	0.15	+1.0
3,338,962	+		HGI48_RS14830	0.15	+1.0
3,338,962	+		HGI48_RS14830	0.15	+1.3
3,338,962	+		HGI48_RS14830	0.15	-1.7
3,338,963	-		HGI48_RS14830	0.15	+0.8
3,338,963	-				-0.7
3,338,963	-				-0.1
3,338,963	-		HGI48_RS14830	0.15	+1.2
3,338,963	-		HGI48_RS14830	0.15	-1.1
3,338,963	-				-0.7
3,338,963	-		HGI48_RS14830	0.15	+0.6
3,338,963	-		HGI48_RS14830	0.15	+0.5
3,338,964	+		HGI48_RS14830	0.15	+1.0
3,338,964	+		HGI48_RS14830	0.15	+2.8
3,338,965	-		HGI48_RS14830	0.15	-0.2
3,338,965	-		HGI48_RS14830	0.15	+1.8
3,338,975	-		HGI48_RS14830	0.15	+1.1
3,338,975	-		HGI48_RS14830	0.15	+0.6
3,338,998	-		HGI48_RS14830	0.15	+0.8