Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12605

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,753,874	+				-1.6
2,753,924	+				-1.6
2,753,925	-				+1.1
2,753,936	+				-1.3
2,753,936	+				+2.1
2,753,937	-				+1.3
2,754,027	+				+1.9
2,754,027	+				-1.6
2,754,027	+				-0.3
2,754,027	+				+0.5
2,754,027	+				-0.9
2,754,028	-				-0.9
2,754,084	+				+0.1
2,754,752	+				-2.8
2,754,752	+				+1.8
2,754,752	+				+0.2
2,754,752	+				-0.9
2,754,752	+				+1.1
2,754,752	+				+0.1
2,754,753	-				-0.9
2,754,753	-				-1.9
2,754,753	-				+1.1
2,754,753	-				+0.5
2,754,757	-				+0.1
2,754,762	+				-2.1
2,754,763	-				-0.2
2,754,763	-				-2.1
2,754,767	+				+1.4
2,754,767	+				-2.9
2,754,767	+				+2.5
2,754,767	+				-1.3
2,754,767	+				-1.6
2,754,768	-				-1.3
2,754,768	-				+3.5
2,754,768	-				+0.1
2,754,768	-				+1.4
2,754,768	-				-1.6
2,754,770	+				+1.3
2,754,770	+				+1.2
2,754,833	+				-1.3
2,754,833	+				+0.9
2,754,833	+				-1.6
2,754,833	+				-3.2
2,754,833	+				+0.7
2,754,833	+				-1.6
2,754,834	-				-0.9
2,754,834	-				+3.3
2,754,834	-				+1.1
2,754,834	-				-0.1
2,754,834	-				-0.3
2,754,834	-				-1.9
2,754,834	-				-3.2
2,754,834	-				+0.9
2,754,836	+				-1.9
2,754,836	+				+0.2
2,754,836	+				-0.9
2,754,839	+				+0.8
2,754,950	+				+1.1
2,754,951	-		HGI48_RS12605	0.13	-3.3
2,754,975	+		HGI48_RS12605	0.15	-1.2
2,755,010	+		HGI48_RS12605	0.17	-0.9
2,755,010	+				+1.7
2,755,010	+		HGI48_RS12605	0.17	+0.5
2,755,011	-		HGI48_RS12605	0.17	+1.2
2,755,011	-		HGI48_RS12605	0.17	+0.5
2,755,080	+		HGI48_RS12605	0.21	-0.2
2,755,081	-		HGI48_RS12605	0.21	-1.9
2,755,193	+		HGI48_RS12605	0.28	+0.2
2,755,194	-		HGI48_RS12605	0.28	+2.0
2,755,194	-		HGI48_RS12605	0.28	+0.6
2,755,194	-		HGI48_RS12605	0.28	-0.4
2,755,229	+				-0.9
2,755,311	+				-0.3
2,755,311	+		HGI48_RS12605	0.35	+0.2
2,755,312	-		HGI48_RS12605	0.36	-2.1
2,755,337	+		HGI48_RS12605	0.37	+1.1
2,755,337	+		HGI48_RS12605	0.37	-1.1
2,755,337	+		HGI48_RS12605	0.37	+1.6
2,755,337	+				-0.9
2,755,337	+		HGI48_RS12605	0.37	-0.2
2,755,337	+				+0.7
2,755,338	-		HGI48_RS12605	0.37	+1.5
2,755,338	-		HGI48_RS12605	0.37	-1.3
2,755,338	-		HGI48_RS12605	0.37	+1.7
2,755,338	-				+1.7
2,755,338	-		HGI48_RS12605	0.37	-1.6
2,755,338	-		HGI48_RS12605	0.37	-1.1
2,755,338	-		HGI48_RS12605	0.37	-1.3
2,755,338	-		HGI48_RS12605	0.37	-2.8
2,755,338	-		HGI48_RS12605	0.37	+0.7
2,755,341	+		HGI48_RS12605	0.37	-2.3
2,755,341	+		HGI48_RS12605	0.37	+0.4
2,755,341	+		HGI48_RS12605	0.37	-3.9
2,755,341	+		HGI48_RS12605	0.37	+0.9
2,755,342	-		HGI48_RS12605	0.37	+1.2
2,755,342	-				-0.9
2,755,344	-		HGI48_RS12605	0.38	-0.5
2,755,344	-		HGI48_RS12605	0.38	-0.0
2,755,463	+		HGI48_RS12605	0.45	+2.8
2,755,464	-		HGI48_RS12605	0.45	+0.1
2,755,464	-		HGI48_RS12605	0.45	-2.1
2,755,467	+		HGI48_RS12605	0.45	+1.6
2,755,467	+		HGI48_RS12605	0.45	-0.0
2,755,467	+				+1.7
2,755,467	+		HGI48_RS12605	0.45	+0.4
2,755,468	-		HGI48_RS12605	0.45	-0.6
2,755,468	-		HGI48_RS12605	0.45	+1.1
2,755,468	-		HGI48_RS12605	0.45	-1.6
2,755,468	-		HGI48_RS12605	0.45	-1.9
2,755,468	-		HGI48_RS12605	0.45	-2.3
2,755,468	-		HGI48_RS12605	0.45	+0.1
2,755,468	-		HGI48_RS12605	0.45	-1.9
2,755,468	-		HGI48_RS12605	0.45	-3.1
2,755,468	-		HGI48_RS12605	0.45	+1.7
2,755,469	+		HGI48_RS12605	0.45	+1.5
2,755,469	+		HGI48_RS12605	0.45	-1.6
2,755,469	+		HGI48_RS12605	0.45	+0.3
2,755,469	+		HGI48_RS12605	0.45	+1.4
2,755,469	+		HGI48_RS12605	0.45	+1.7
2,755,469	+		HGI48_RS12605	0.45	-1.6
2,755,469	+		HGI48_RS12605	0.45	+1.7
2,755,469	+		HGI48_RS12605	0.45	+0.1
2,755,469	+		HGI48_RS12605	0.45	+1.0
2,755,470	-		HGI48_RS12605	0.45	+1.6
2,755,470	-		HGI48_RS12605	0.45	+0.4
2,755,470	-		HGI48_RS12605	0.45	-1.9
2,755,470	-		HGI48_RS12605	0.45	+1.5
2,755,470	-		HGI48_RS12605	0.45	+0.7
2,755,481	+		HGI48_RS12605	0.46	+1.1
2,755,482	-				-0.9
2,755,482	-		HGI48_RS12605	0.46	-2.3
2,755,496	-		HGI48_RS12605	0.47	-3.1
2,755,550	+		HGI48_RS12605	0.50	-1.7
2,755,550	+		HGI48_RS12605	0.50	+2.3
2,755,550	+		HGI48_RS12605	0.50	+2.0
2,755,550	+		HGI48_RS12605	0.50	+0.5
2,755,575	+		HGI48_RS12605	0.52	+0.5
2,755,578	-				+1.1
2,755,648	-		HGI48_RS12605	0.56	-1.9
2,755,655	+		HGI48_RS12605	0.57	+0.5
2,755,656	-		HGI48_RS12605	0.57	-1.9
2,755,659	+		HGI48_RS12605	0.57	+0.7
2,755,659	+				-0.9
2,755,660	-		HGI48_RS12605	0.57	-1.3
2,755,665	+		HGI48_RS12605	0.57	+0.9
2,755,680	+		HGI48_RS12605	0.58	+0.4
2,755,680	+		HGI48_RS12605	0.58	-1.9
2,755,799	+		HGI48_RS12605	0.66	+1.2
2,755,799	+		HGI48_RS12605	0.66	+0.2
2,755,799	+		HGI48_RS12605	0.66	+2.1
2,755,799	+		HGI48_RS12605	0.66	+0.7
2,755,799	+		HGI48_RS12605	0.66	+0.7
2,755,799	+		HGI48_RS12605	0.66	+1.3
2,755,799	+		HGI48_RS12605	0.66	-1.9
2,755,799	+		HGI48_RS12605	0.66	-1.6
2,755,799	+		HGI48_RS12605	0.66	+1.7
2,755,799	+		HGI48_RS12605	0.66	-1.9
2,755,800	-		HGI48_RS12605	0.66	-1.9
2,755,800	-		HGI48_RS12605	0.66	-3.3
2,755,800	-				+2.1
2,755,824	-		HGI48_RS12605	0.67	+0.5
2,755,852	+				+2.1
2,755,852	+				+3.4
2,755,852	+		HGI48_RS12605	0.69	-0.0
2,755,852	+		HGI48_RS12605	0.69	-1.3
2,755,853	-		HGI48_RS12605	0.69	+0.3
2,755,938	+		HGI48_RS12605	0.74	+0.5
2,755,938	+		HGI48_RS12605	0.74	-0.3
2,755,939	-				-0.9
2,755,939	-		HGI48_RS12605	0.74	+1.6
2,755,949	+		HGI48_RS12605	0.75	-3.0
2,755,949	+		HGI48_RS12605	0.75	+0.7
2,755,949	+		HGI48_RS12605	0.75	-1.7
2,755,949	+		HGI48_RS12605	0.75	+3.2
2,755,949	+		HGI48_RS12605	0.75	-2.5
2,755,949	+		HGI48_RS12605	0.75	+0.3
2,755,949	+		HGI48_RS12605	0.75	+0.2
2,755,949	+		HGI48_RS12605	0.75	+1.9
2,755,950	-		HGI48_RS12605	0.75	-0.3
2,755,950	-		HGI48_RS12605	0.75	+1.0
2,755,950	-		HGI48_RS12605	0.75	-1.9
2,756,079	+				+1.7
2,756,079	+		HGI48_RS12605	0.83	-2.5
2,756,086	-				-0.9
2,756,179	+		HGI48_RS12605	0.89	-2.5
2,756,179	+		HGI48_RS12605	0.89	+1.4
2,756,180	-		HGI48_RS12605	0.89	-0.1
2,756,180	-		HGI48_RS12605	0.89	-0.2
2,756,180	-		HGI48_RS12605	0.89	+2.5
2,756,180	-		HGI48_RS12605	0.89	+0.0
2,756,180	-				+0.7
2,756,180	-		HGI48_RS12605	0.89	-1.3
2,756,197	-				-0.9
2,756,304	+				-3.3
2,756,305	-				-0.6
2,756,314	+				+1.1
2,756,315	-				-1.6
2,756,315	-				-1.3
2,756,315	-				+0.3
2,756,315	-				+1.5
2,756,446	+				+1.0
2,756,446	+				+0.2
2,756,447	-				-3.1
2,756,447	-				-0.0
2,756,449	+				-1.4
2,756,449	+				+0.4
2,756,449	+				+0.1
2,756,491	+				-2.3
2,756,491	+				-2.3
2,756,547	-				-0.3
2,756,551	-				+0.8
2,756,570	-				+2.7
2,756,570	-				-1.0
2,756,597	+				+0.6
2,756,606	+				-1.9
2,756,606	+				-0.9
2,756,610	+				-0.7
2,756,611	-				+1.4
2,756,611	-				+1.2
2,756,611	-				-1.6
2,756,622	+				-1.9
2,756,623	-				-2.3
2,756,689	+				+1.0
2,756,689	+				-1.9
2,756,703	+				+0.7
2,756,704	-				-2.3
2,756,704	-				-2.5
2,756,704	-				-2.8
2,756,730	+				-0.9
2,756,731	-				-0.5
2,756,942	-				-0.9
2,756,942	-				+1.9
2,756,954	-		HGI48_RS12610	0.10	-1.6
2,756,954	-		HGI48_RS12610	0.10	-1.3
2,756,954	-		HGI48_RS12610	0.10	-1.9
2,756,954	-		HGI48_RS12610	0.10	-1.3
2,757,069	-		HGI48_RS12610	0.15	-1.3
2,757,069	-		HGI48_RS12610	0.15	-2.5
2,757,069	-		HGI48_RS12610	0.15	-0.2
2,757,102	+		HGI48_RS12610	0.16	+0.4
2,757,103	-		HGI48_RS12610	0.16	+0.9
2,757,106	+		HGI48_RS12610	0.16	-1.6
2,757,325	+		HGI48_RS12610	0.24	-0.1
2,757,325	+				-0.9
2,757,325	+		HGI48_RS12610	0.24	+0.7
2,757,325	+		HGI48_RS12610	0.24	+0.2
2,757,325	+		HGI48_RS12610	0.24	-1.6