Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10670

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,304,264	+		HGI48_RS10665	0.31	-1.4
2,304,264	+				+1.9
2,304,264	+		HGI48_RS10665	0.31	+1.0
2,304,280	-		HGI48_RS10665	0.33	+0.7
2,304,321	+		HGI48_RS10665	0.36	+0.4
2,304,322	-		HGI48_RS10665	0.36	+0.9
2,304,347	+		HGI48_RS10665	0.38	-2.0
2,304,347	+		HGI48_RS10665	0.38	-0.2
2,304,347	+				+1.6
2,304,347	+		HGI48_RS10665	0.38	-1.0
2,304,347	+		HGI48_RS10665	0.38	-2.4
2,304,347	+		HGI48_RS10665	0.38	+0.6
2,304,347	+		HGI48_RS10665	0.38	-2.0
2,304,347	+		HGI48_RS10665	0.38	+1.1
2,304,347	+		HGI48_RS10665	0.38	-1.4
2,304,347	+		HGI48_RS10665	0.38	-1.1
2,304,347	+		HGI48_RS10665	0.38	-2.0
2,304,347	+		HGI48_RS10665	0.38	-1.7
2,304,348	-		HGI48_RS10665	0.38	-0.8
2,304,348	-		HGI48_RS10665	0.38	-2.2
2,304,348	-		HGI48_RS10665	0.38	+0.8
2,304,348	-		HGI48_RS10665	0.38	-1.7
2,304,348	-		HGI48_RS10665	0.38	+1.4
2,304,348	-		HGI48_RS10665	0.38	-0.4
2,304,348	-		HGI48_RS10665	0.38	+0.1
2,304,348	-		HGI48_RS10665	0.38	-0.4
2,304,348	-				+2.9
2,304,348	-		HGI48_RS10665	0.38	+0.3
2,304,348	-		HGI48_RS10665	0.38	+2.8
2,304,348	-		HGI48_RS10665	0.38	+1.7
2,304,349	+		HGI48_RS10665	0.38	-1.4
2,304,349	+		HGI48_RS10665	0.38	-0.2
2,304,351	+		HGI48_RS10665	0.38	+1.0
2,304,351	+		HGI48_RS10665	0.38	-1.7
2,304,351	+		HGI48_RS10665	0.38	-2.4
2,304,351	+		HGI48_RS10665	0.38	-2.4
2,304,351	+		HGI48_RS10665	0.38	+0.3
2,304,351	+		HGI48_RS10665	0.38	+1.1
2,304,351	+		HGI48_RS10665	0.38	-1.9
2,304,352	-		HGI48_RS10665	0.38	-2.6
2,304,352	-		HGI48_RS10665	0.38	+0.2
2,304,352	-		HGI48_RS10665	0.38	+0.8
2,304,352	-		HGI48_RS10665	0.38	+0.9
2,304,597	-				+1.3
2,304,636	+		HGI48_RS10665	0.61	+0.5
2,304,636	+		HGI48_RS10665	0.61	-2.2
2,304,636	+		HGI48_RS10665	0.61	+1.2
2,304,636	+		HGI48_RS10665	0.61	-1.4
2,304,636	+		HGI48_RS10665	0.61	+1.2
2,304,637	-				+0.6
2,304,637	-		HGI48_RS10665	0.61	-0.7
2,304,637	-		HGI48_RS10665	0.61	-1.0
2,304,637	-		HGI48_RS10665	0.61	-2.2
2,304,637	-		HGI48_RS10665	0.61	+0.1
2,304,637	-				-1.0
2,304,637	-		HGI48_RS10665	0.61	+0.3
2,304,637	-		HGI48_RS10665	0.61	-0.3
2,304,659	+		HGI48_RS10665	0.63	+1.5
2,304,687	+		HGI48_RS10665	0.65	+2.4
2,304,688	-				-1.0
2,304,688	-		HGI48_RS10665	0.65	+0.6
2,304,688	-		HGI48_RS10665	0.65	-2.1
2,304,788	-				+2.8
2,304,791	+		HGI48_RS10665	0.73	+1.4
2,304,863	+		HGI48_RS10665	0.79	-0.4
2,304,863	+				-0.4
2,304,863	+		HGI48_RS10665	0.79	-2.9
2,304,864	-		HGI48_RS10665	0.79	-1.4
2,304,864	-		HGI48_RS10665	0.79	-2.2
2,304,880	+		HGI48_RS10665	0.80	-0.4
2,304,880	+		HGI48_RS10665	0.80	-0.2
2,304,972	+				-0.4
2,304,972	+		HGI48_RS10665	0.88	-2.0
2,304,972	+				+0.6
2,304,973	-		HGI48_RS10665	0.88	-2.6
2,304,977	+		HGI48_RS10665	0.88	-2.2
2,304,978	-		HGI48_RS10665	0.88	+0.9
2,305,051	+				+0.6
2,305,052	-				+1.3
2,305,063	+				-1.4
2,305,063	+				-0.3
2,305,063	+				-2.0
2,305,063	+				-0.9
2,305,063	+				+1.2
2,305,063	+				-3.4
2,305,063	+				-1.4
2,305,064	-				-0.7
2,305,064	-				+0.6
2,305,064	-				-0.8
2,305,064	-				+1.0
2,305,065	+				-1.0
2,305,175	-				-1.7
2,305,284	+				+1.3
2,305,285	-				+2.0
2,305,345	+				-2.0
2,305,345	+				+0.3
2,305,346	-				-0.0
2,305,346	-				+0.8
2,305,620	-		HGI48_RS10670	0.39	+0.4
2,305,776	+		HGI48_RS10670	0.56	+1.7
2,305,776	+		HGI48_RS10670	0.56	-1.4
2,305,776	+		HGI48_RS10670	0.56	+1.2
2,305,776	+		HGI48_RS10670	0.56	+0.5
2,305,777	-		HGI48_RS10670	0.56	+1.1
2,305,777	-		HGI48_RS10670	0.56	-1.4
2,305,777	-		HGI48_RS10670	0.56	-1.4
2,305,819	+		HGI48_RS10670	0.61	+1.2
2,305,819	+		HGI48_RS10670	0.61	-2.6
2,305,819	+		HGI48_RS10670	0.61	+0.4
2,305,819	+		HGI48_RS10670	0.61	-3.0
2,305,819	+				-1.0
2,305,819	+		HGI48_RS10670	0.61	+0.3
2,305,819	+		HGI48_RS10670	0.61	+0.6
2,305,820	-		HGI48_RS10670	0.61	+0.7
2,305,820	-		HGI48_RS10670	0.61	-2.2
2,305,820	-		HGI48_RS10670	0.61	+0.0
2,305,823	-				-1.0
2,305,913	+		HGI48_RS10670	0.71	-2.0
2,305,914	-		HGI48_RS10670	0.71	-0.3
2,305,928	+		HGI48_RS10670	0.73	-0.4
2,305,928	+		HGI48_RS10670	0.73	-1.0
2,305,928	+				+1.0
2,305,928	+				-1.0
2,305,929	-		HGI48_RS10670	0.73	+4.5
2,305,929	-		HGI48_RS10670	0.73	+0.7
2,305,929	-		HGI48_RS10670	0.73	+0.6
2,305,929	-		HGI48_RS10670	0.73	+0.6
2,306,042	+		HGI48_RS10670	0.85	-0.4
2,306,042	+		HGI48_RS10670	0.85	-1.0
2,306,042	+		HGI48_RS10670	0.85	-1.4
2,306,043	-		HGI48_RS10670	0.85	+0.3
2,306,140	+				+0.9
2,306,140	+				-2.2
2,306,140	+				+0.5
2,306,140	+				+0.8
2,306,141	-				+2.0
2,306,195	-				-2.9
2,306,206	-				-2.4
2,306,339	+				+0.2
2,306,339	+				+2.0
2,306,433	+		HGI48_RS10675	0.11	+0.8
2,306,434	-		HGI48_RS10675	0.12	+0.6
2,306,485	+		HGI48_RS10675	0.16	-2.4
2,306,552	-		HGI48_RS10675	0.21	-2.4
2,306,643	+				-1.0
2,306,644	-		HGI48_RS10675	0.29	+1.3
2,306,700	+		HGI48_RS10675	0.33	+2.1
2,306,715	+		HGI48_RS10675	0.35	+0.4
2,306,860	+		HGI48_RS10675	0.47	+0.5
2,306,860	+		HGI48_RS10675	0.47	-1.4
2,306,860	+		HGI48_RS10675	0.47	-2.4
2,306,904	-				-0.4
2,306,955	+		HGI48_RS10675	0.54	+0.1
2,307,061	+		HGI48_RS10675	0.63	-1.4