Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09690

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS09685 and HGI48_RS09690 are separated by 214 nucleotidesHGI48_RS09690 and HGI48_RS09695 are separated by 104 nucleotides HGI48_RS09685: HGI48_RS09685 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,091,413 to 2,092,702 _RS09685 HGI48_RS09690: HGI48_RS09690 - (d)CMP kinase, at 2,092,917 to 2,093,603 _RS09690 HGI48_RS09695: HGI48_RS09695 - 30S ribosomal protein S1, at 2,093,708 to 2,095,381 _RS09695 Position (kb) 2092 2093 2094Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2092.704 kb on - strandat 2092.704 kb on - strandat 2092.704 kb on - strandat 2092.726 kb on + strandat 2092.726 kb on + strandat 2092.726 kb on + strandat 2092.727 kb on - strandat 2092.775 kb on + strandat 2092.776 kb on - strandat 2092.776 kb on - strandat 2092.778 kb on - strandat 2092.778 kb on - strandat 2092.778 kb on - strandat 2092.778 kb on - strandat 2092.790 kb on - strandat 2092.794 kb on + strandat 2092.818 kb on + strandat 2092.818 kb on + strandat 2092.818 kb on + strandat 2092.855 kb on - strandat 2092.856 kb on + strandat 2092.865 kb on - strandat 2092.870 kb on - strandat 2092.876 kb on + strandat 2092.904 kb on + strandat 2093.584 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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2,092,704 - -0.1
2,092,704 - -3.1
2,092,704 - -1.7
2,092,726 + -2.4
2,092,726 + +1.9
2,092,726 + +0.1
2,092,727 - -0.4
2,092,775 + -1.1
2,092,776 - +1.3
2,092,776 - -0.4
2,092,778 - +1.1
2,092,778 - +1.0
2,092,778 - -2.5
2,092,778 - +0.5
2,092,790 - +0.4
2,092,794 + +0.1
2,092,818 + +1.6
2,092,818 + +0.6
2,092,818 + +0.6
2,092,855 - -0.9
2,092,856 + -0.4
2,092,865 - +1.9
2,092,870 - +2.2
2,092,876 + -1.7
2,092,904 + +4.3
2,093,584 + -1.9

Or see this region's nucleotide sequence