Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS09685 and HGI48_RS09690 are separated by 214 nucleotides HGI48_RS09690 and HGI48_RS09695 are separated by 104 nucleotides
HGI48_RS09685: HGI48_RS09685 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,091,413 to 2,092,702
_RS09685
HGI48_RS09690: HGI48_RS09690 - (d)CMP kinase, at 2,092,917 to 2,093,603
_RS09690
HGI48_RS09695: HGI48_RS09695 - 30S ribosomal protein S1, at 2,093,708 to 2,095,381
_RS09695
Position (kb)
2092
2093
2094 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2092.704 kb on - strand at 2092.704 kb on - strand at 2092.704 kb on - strand at 2092.726 kb on + strand at 2092.726 kb on + strand at 2092.726 kb on + strand at 2092.727 kb on - strand at 2092.775 kb on + strand at 2092.776 kb on - strand at 2092.776 kb on - strand at 2092.778 kb on - strand at 2092.778 kb on - strand at 2092.778 kb on - strand at 2092.778 kb on - strand at 2092.790 kb on - strand at 2092.794 kb on + strand at 2092.818 kb on + strand at 2092.818 kb on + strand at 2092.818 kb on + strand at 2092.855 kb on - strand at 2092.856 kb on + strand at 2092.865 kb on - strand at 2092.870 kb on - strand at 2092.876 kb on + strand at 2092.904 kb on + strand at 2093.584 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 2,092,704 - -0.1 2,092,704 - -3.1 2,092,704 - -1.7 2,092,726 + -2.4 2,092,726 + +1.9 2,092,726 + +0.1 2,092,727 - -0.4 2,092,775 + -1.1 2,092,776 - +1.3 2,092,776 - -0.4 2,092,778 - +1.1 2,092,778 - +1.0 2,092,778 - -2.5 2,092,778 - +0.5 2,092,790 - +0.4 2,092,794 + +0.1 2,092,818 + +1.6 2,092,818 + +0.6 2,092,818 + +0.6 2,092,855 - -0.9 2,092,856 + -0.4 2,092,865 - +1.9 2,092,870 - +2.2 2,092,876 + -1.7 2,092,904 + +4.3 2,093,584 + -1.9
Or see this region's nucleotide sequence