Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS09040 and HGI48_RS09045 are separated by 220 nucleotides HGI48_RS09045 and HGI48_RS09050 are separated by 27 nucleotides HGI48_RS09050 and HGI48_RS09055 are separated by 305 nucleotides HGI48_RS09055 and HGI48_RS09060 overlap by 11 nucleotides HGI48_RS09060 and HGI48_RS09065 are separated by 233 nucleotides
HGI48_RS09040: HGI48_RS09040 - SDR family NAD(P)-dependent oxidoreductase, at 1,946,731 to 1,947,537
_RS09040
HGI48_RS09045: HGI48_RS09045 - hypothetical protein, at 1,947,758 to 1,948,054
_RS09045
HGI48_RS09050: HGI48_RS09050 - SDR family oxidoreductase, at 1,948,082 to 1,948,789
_RS09050
HGI48_RS09055: HGI48_RS09055 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,949,095 to 1,949,379
_RS09055
HGI48_RS09060: HGI48_RS09060 - hypothetical protein, at 1,949,369 to 1,949,545
_RS09060
HGI48_RS09065: HGI48_RS09065 - glycoside hydrolase family 3 protein, at 1,949,779 to 1,951,572
_RS09065
Position (kb) 1948
1949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1947.157 kb on + strand, within HGI48_RS09040 at 1947.157 kb on + strand, within HGI48_RS09040 at 1947.187 kb on + strand, within HGI48_RS09040 at 1947.313 kb on + strand, within HGI48_RS09040 at 1947.314 kb on - strand, within HGI48_RS09040 at 1947.336 kb on - strand, within HGI48_RS09040 at 1947.336 kb on - strand, within HGI48_RS09040 at 1947.389 kb on + strand, within HGI48_RS09040 at 1947.389 kb on + strand, within HGI48_RS09040 at 1947.390 kb on - strand, within HGI48_RS09040 at 1947.390 kb on - strand, within HGI48_RS09040 at 1947.390 kb on - strand, within HGI48_RS09040 at 1947.390 kb on - strand, within HGI48_RS09040 at 1947.408 kb on + strand at 1947.473 kb on + strand at 1947.481 kb on + strand at 1947.482 kb on - strand at 1947.514 kb on - strand at 1947.514 kb on - strand at 1947.514 kb on - strand at 1947.535 kb on + strand at 1947.560 kb on - strand at 1947.560 kb on - strand at 1947.560 kb on - strand at 1947.561 kb on + strand at 1947.613 kb on + strand at 1947.743 kb on + strand at 1947.745 kb on + strand at 1947.746 kb on - strand at 1947.746 kb on - strand at 1947.767 kb on + strand at 1947.767 kb on + strand at 1947.767 kb on + strand at 1947.768 kb on - strand at 1947.863 kb on - strand at 1947.883 kb on + strand, within HGI48_RS09045 at 1947.962 kb on - strand, within HGI48_RS09045 at 1947.964 kb on + strand, within HGI48_RS09045 at 1947.994 kb on - strand, within HGI48_RS09045 at 1948.014 kb on - strand, within HGI48_RS09045 at 1948.022 kb on + strand, within HGI48_RS09045 at 1948.023 kb on - strand, within HGI48_RS09045 at 1948.027 kb on + strand at 1948.052 kb on + strand at 1948.060 kb on + strand at 1948.066 kb on + strand at 1948.068 kb on + strand at 1948.123 kb on + strand at 1948.123 kb on + strand at 1948.124 kb on - strand at 1948.155 kb on + strand, within HGI48_RS09050 at 1948.156 kb on - strand, within HGI48_RS09050 at 1948.181 kb on + strand, within HGI48_RS09050 at 1948.182 kb on - strand, within HGI48_RS09050 at 1948.182 kb on - strand, within HGI48_RS09050 at 1948.300 kb on - strand, within HGI48_RS09050 at 1948.336 kb on + strand, within HGI48_RS09050 at 1948.336 kb on + strand, within HGI48_RS09050 at 1948.336 kb on + strand, within HGI48_RS09050 at 1948.337 kb on - strand, within HGI48_RS09050 at 1948.363 kb on - strand at 1948.406 kb on - strand, within HGI48_RS09050 at 1948.406 kb on - strand, within HGI48_RS09050 at 1948.406 kb on - strand at 1948.416 kb on + strand, within HGI48_RS09050 at 1948.416 kb on + strand at 1948.417 kb on - strand at 1948.511 kb on + strand, within HGI48_RS09050 at 1948.511 kb on + strand, within HGI48_RS09050 at 1948.511 kb on + strand, within HGI48_RS09050 at 1948.511 kb on + strand at 1948.512 kb on - strand, within HGI48_RS09050 at 1948.512 kb on - strand, within HGI48_RS09050 at 1948.512 kb on - strand, within HGI48_RS09050 at 1948.646 kb on - strand, within HGI48_RS09050 at 1948.769 kb on + strand at 1948.769 kb on + strand at 1948.769 kb on + strand at 1948.769 kb on + strand at 1948.769 kb on + strand at 1948.770 kb on - strand at 1948.770 kb on - strand at 1948.770 kb on - strand at 1948.787 kb on + strand at 1948.810 kb on + strand at 1948.816 kb on + strand at 1948.817 kb on - strand at 1948.817 kb on - strand at 1948.828 kb on - strand at 1948.828 kb on - strand at 1948.828 kb on - strand at 1948.834 kb on + strand at 1948.834 kb on + strand at 1948.834 kb on + strand at 1948.887 kb on + strand at 1948.887 kb on + strand at 1948.888 kb on - strand at 1948.888 kb on - strand at 1948.962 kb on + strand at 1948.962 kb on + strand at 1948.962 kb on + strand at 1948.962 kb on + strand at 1948.963 kb on - strand at 1948.977 kb on + strand at 1949.012 kb on + strand at 1949.013 kb on - strand at 1949.042 kb on + strand at 1949.042 kb on + strand at 1949.043 kb on - strand at 1949.047 kb on + strand at 1949.047 kb on + strand at 1949.047 kb on + strand at 1949.048 kb on - strand at 1949.069 kb on - strand at 1949.138 kb on - strand, within HGI48_RS09055 at 1949.178 kb on + strand, within HGI48_RS09055 at 1949.178 kb on + strand, within HGI48_RS09055 at 1949.179 kb on - strand, within HGI48_RS09055 at 1949.179 kb on - strand, within HGI48_RS09055 at 1949.180 kb on + strand, within HGI48_RS09055 at 1949.180 kb on + strand, within HGI48_RS09055 at 1949.180 kb on + strand, within HGI48_RS09055 at 1949.181 kb on - strand, within HGI48_RS09055 at 1949.181 kb on - strand, within HGI48_RS09055 at 1949.324 kb on + strand, within HGI48_RS09055 at 1949.324 kb on + strand, within HGI48_RS09055 at 1949.324 kb on + strand, within HGI48_RS09055 at 1949.371 kb on - strand at 1949.415 kb on - strand, within HGI48_RS09060 at 1949.566 kb on - strand at 1949.602 kb on + strand at 1949.602 kb on + strand at 1949.602 kb on + strand at 1949.602 kb on + strand at 1949.603 kb on - strand at 1949.603 kb on - strand at 1949.603 kb on - strand at 1949.603 kb on - strand at 1949.603 kb on - strand at 1949.606 kb on + strand at 1949.606 kb on + strand at 1949.606 kb on + strand at 1949.607 kb on - strand at 1949.661 kb on + strand at 1949.685 kb on + strand at 1949.727 kb on - strand at 1949.750 kb on + strand at 1949.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,947,157 + HGI48_RS09040 0.53 +1.0 1,947,157 + HGI48_RS09040 0.53 +0.3 1,947,187 + HGI48_RS09040 0.57 +1.9 1,947,313 + HGI48_RS09040 0.72 +0.7 1,947,314 - HGI48_RS09040 0.72 -1.4 1,947,336 - HGI48_RS09040 0.75 -1.6 1,947,336 - HGI48_RS09040 0.75 +0.2 1,947,389 + HGI48_RS09040 0.82 -2.1 1,947,389 + HGI48_RS09040 0.82 +2.0 1,947,390 - HGI48_RS09040 0.82 +1.7 1,947,390 - HGI48_RS09040 0.82 -2.1 1,947,390 - HGI48_RS09040 0.82 -1.3 1,947,390 - HGI48_RS09040 0.82 -0.5 1,947,408 + +3.3 1,947,473 + -1.3 1,947,481 + +1.0 1,947,482 - +0.9 1,947,514 - -0.9 1,947,514 - +0.6 1,947,514 - +0.4 1,947,535 + +2.0 1,947,560 - -1.3 1,947,560 - -0.9 1,947,560 - +2.4 1,947,561 + -1.6 1,947,613 + -1.3 1,947,743 + -1.9 1,947,745 + +0.3 1,947,746 - +0.4 1,947,746 - -1.6 1,947,767 + +0.4 1,947,767 + +0.9 1,947,767 + +2.1 1,947,768 - -1.3 1,947,863 - +2.3 1,947,883 + HGI48_RS09045 0.42 +0.3 1,947,962 - HGI48_RS09045 0.69 +1.3 1,947,964 + HGI48_RS09045 0.69 +1.1 1,947,994 - HGI48_RS09045 0.79 +1.1 1,948,014 - HGI48_RS09045 0.86 -0.3 1,948,022 + HGI48_RS09045 0.89 +0.7 1,948,023 - HGI48_RS09045 0.89 +1.1 1,948,027 + -0.7 1,948,052 + +0.5 1,948,060 + -2.1 1,948,066 + -0.3 1,948,068 + +0.3 1,948,123 + -1.6 1,948,123 + +0.5 1,948,124 - +0.8 1,948,155 + HGI48_RS09050 0.10 +1.2 1,948,156 - HGI48_RS09050 0.10 +1.9 1,948,181 + HGI48_RS09050 0.14 +1.2 1,948,182 - HGI48_RS09050 0.14 -1.3 1,948,182 - HGI48_RS09050 0.14 -1.9 1,948,300 - HGI48_RS09050 0.31 -0.3 1,948,336 + HGI48_RS09050 0.36 -1.9 1,948,336 + HGI48_RS09050 0.36 -1.6 1,948,336 + HGI48_RS09050 0.36 +1.7 1,948,337 - HGI48_RS09050 0.36 +0.1 1,948,363 - -0.9 1,948,406 - HGI48_RS09050 0.46 +0.8 1,948,406 - HGI48_RS09050 0.46 +1.5 1,948,406 - +2.7 1,948,416 + HGI48_RS09050 0.47 -1.9 1,948,416 + -0.3 1,948,417 - +1.1 1,948,511 + HGI48_RS09050 0.61 +1.5 1,948,511 + HGI48_RS09050 0.61 +0.7 1,948,511 + HGI48_RS09050 0.61 +1.2 1,948,511 + -0.3 1,948,512 - HGI48_RS09050 0.61 +0.2 1,948,512 - HGI48_RS09050 0.61 -1.2 1,948,512 - HGI48_RS09050 0.61 -1.9 1,948,646 - HGI48_RS09050 0.80 -0.3 1,948,769 + -1.3 1,948,769 + +0.5 1,948,769 + -2.3 1,948,769 + -3.3 1,948,769 + +0.4 1,948,770 - -0.9 1,948,770 - -0.9 1,948,770 - +1.5 1,948,787 + -0.3 1,948,810 + +0.4 1,948,816 + -0.7 1,948,817 - +0.6 1,948,817 - -1.6 1,948,828 - -1.2 1,948,828 - +1.2 1,948,828 - -2.1 1,948,834 + -1.6 1,948,834 + -1.6 1,948,834 + +1.7 1,948,887 + -1.6 1,948,887 + +0.9 1,948,888 - +1.1 1,948,888 - -1.3 1,948,962 + -2.1 1,948,962 + -0.9 1,948,962 + +0.7 1,948,962 + -2.3 1,948,963 - -1.6 1,948,977 + -0.3 1,949,012 + -0.9 1,949,013 - +0.7 1,949,042 + -2.1 1,949,042 + +0.7 1,949,043 - -2.3 1,949,047 + +2.7 1,949,047 + +1.3 1,949,047 + -1.9 1,949,048 - -1.8 1,949,069 - -1.3 1,949,138 - HGI48_RS09055 0.15 +1.0 1,949,178 + HGI48_RS09055 0.29 +0.1 1,949,178 + HGI48_RS09055 0.29 +1.6 1,949,179 - HGI48_RS09055 0.29 +2.0 1,949,179 - HGI48_RS09055 0.29 -0.7 1,949,180 + HGI48_RS09055 0.30 -2.1 1,949,180 + HGI48_RS09055 0.30 -1.3 1,949,180 + HGI48_RS09055 0.30 -2.8 1,949,181 - HGI48_RS09055 0.30 -1.2 1,949,181 - HGI48_RS09055 0.30 +3.3 1,949,324 + HGI48_RS09055 0.80 +1.8 1,949,324 + HGI48_RS09055 0.80 +0.5 1,949,324 + HGI48_RS09055 0.80 -0.8 1,949,371 - -0.9 1,949,415 - HGI48_RS09060 0.26 -2.5 1,949,566 - -0.9 1,949,602 + -1.3 1,949,602 + -0.8 1,949,602 + -0.1 1,949,602 + -1.9 1,949,603 - -2.5 1,949,603 - -1.0 1,949,603 - -2.6 1,949,603 - +2.2 1,949,603 - -1.9 1,949,606 + -1.3 1,949,606 + -0.6 1,949,606 + -0.3 1,949,607 - +2.8 1,949,661 + -1.9 1,949,685 + -0.9 1,949,727 - -1.1 1,949,750 + -1.6 1,949,787 + +0.7
Or see this region's nucleotide sequence