Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07320

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,555,230	+		HGI48_RS07310	0.47	+0.9
1,555,230	+		HGI48_RS07310	0.47	+1.0
1,555,230	+		HGI48_RS07310	0.47	-1.5
1,555,230	+				+0.8
1,555,231	-				-0.8
1,555,231	-		HGI48_RS07310	0.47	+2.2
1,555,275	+		HGI48_RS07310	0.53	-3.0
1,555,275	+		HGI48_RS07310	0.53	+2.2
1,555,275	+		HGI48_RS07310	0.53	+1.1
1,555,276	-		HGI48_RS07310	0.53	+1.0
1,555,318	-		HGI48_RS07310	0.58	+2.7
1,555,353	+		HGI48_RS07310	0.63	-2.5
1,555,353	+		HGI48_RS07310	0.63	+1.8
1,555,354	-		HGI48_RS07310	0.63	+0.6
1,555,354	-				-0.2
1,555,474	+		HGI48_RS07310	0.78	-2.0
1,555,493	+		HGI48_RS07310	0.80	-1.8
1,555,494	-		HGI48_RS07310	0.80	-2.0
1,555,531	-		HGI48_RS07310	0.85	-2.4
1,555,536	+		HGI48_RS07310	0.86	-1.2
1,555,536	+		HGI48_RS07310	0.86	-0.6
1,555,536	+		HGI48_RS07310	0.86	-2.5
1,555,536	+		HGI48_RS07310	0.86	-2.5
1,555,537	-		HGI48_RS07310	0.86	-1.2
1,555,537	-		HGI48_RS07310	0.86	+1.7
1,555,537	-		HGI48_RS07310	0.86	+0.8
1,555,601	-				+0.3
1,555,617	+				-2.9
1,555,617	+				+1.0
1,555,642	+				-1.1
1,555,642	+				+1.2
1,555,642	+				-0.5
1,555,642	+				+2.3
1,555,642	+				+0.3
1,555,642	+				+0.3
1,555,642	+				-1.2
1,555,642	+				-1.8
1,555,643	-				-1.2
1,555,643	-				-1.8
1,555,820	+		HGI48_RS07315	0.31	+2.6
1,555,820	+		HGI48_RS07315	0.31	+1.4
1,555,820	+		HGI48_RS07315	0.31	+0.7
1,555,820	+		HGI48_RS07315	0.31	-2.5
1,555,820	+		HGI48_RS07315	0.31	+2.1
1,555,820	+		HGI48_RS07315	0.31	+0.7
1,555,821	-		HGI48_RS07315	0.31	+1.8
1,555,821	-		HGI48_RS07315	0.31	-2.2
1,555,821	-		HGI48_RS07315	0.31	-0.2
1,555,821	-		HGI48_RS07315	0.31	-0.5
1,555,963	+		HGI48_RS07315	0.56	+2.2
1,555,963	+		HGI48_RS07315	0.56	-1.2
1,555,964	-		HGI48_RS07315	0.56	+1.2
1,556,076	+		HGI48_RS07315	0.76	-3.3
1,556,077	-				+1.8
1,556,112	-				-0.8
1,556,112	-		HGI48_RS07315	0.82	+1.8
1,556,162	+				+2.9
1,556,208	+				+1.7
1,556,208	+				-0.2
1,556,209	-				-1.2
1,556,209	-				+1.5
1,556,209	-				+3.6
1,556,333	-				+0.6
1,556,340	+				-1.2
1,556,341	-				-2.0
1,556,341	-				+2.6
1,556,341	-				-0.4
1,556,401	+		HGI48_RS07320	0.10	-0.2
1,556,402	-		HGI48_RS07320	0.10	-3.6
1,556,544	+		HGI48_RS07320	0.18	-1.2
1,556,652	+		HGI48_RS07320	0.25	-0.2
1,556,652	+		HGI48_RS07320	0.25	-1.2
1,556,652	+		HGI48_RS07320	0.25	-1.2
1,556,653	-		HGI48_RS07320	0.25	+0.1
1,556,775	+		HGI48_RS07320	0.32	-2.4
1,556,776	-		HGI48_RS07320	0.32	+0.1
1,556,891	+		HGI48_RS07320	0.39	+0.2
1,556,892	-		HGI48_RS07320	0.39	+0.3
1,556,892	-		HGI48_RS07320	0.39	-2.8
1,557,128	-		HGI48_RS07320	0.52	-0.4
1,557,180	+		HGI48_RS07320	0.55	-2.0
1,557,180	+		HGI48_RS07320	0.55	-1.2
1,557,181	-		HGI48_RS07320	0.55	-0.4
1,557,181	-		HGI48_RS07320	0.55	-1.2
1,557,291	+		HGI48_RS07320	0.62	-0.0
1,557,291	+		HGI48_RS07320	0.62	-2.2
1,557,291	+		HGI48_RS07320	0.62	-0.2
1,557,291	+		HGI48_RS07320	0.62	-0.2
1,557,291	+				-0.2
1,557,292	-		HGI48_RS07320	0.62	-1.5
1,557,292	-		HGI48_RS07320	0.62	-2.4
1,557,292	-		HGI48_RS07320	0.62	-2.6
1,557,292	-		HGI48_RS07320	0.62	-0.4
1,557,292	-		HGI48_RS07320	0.62	-2.8
1,557,429	+		HGI48_RS07320	0.70	+0.8
1,557,429	+		HGI48_RS07320	0.70	-1.5
1,557,429	+				-0.8
1,557,468	+		HGI48_RS07320	0.72	-1.5
1,557,496	-		HGI48_RS07320	0.74	+0.0
1,557,567	+		HGI48_RS07320	0.78	+0.6
1,557,567	+		HGI48_RS07320	0.78	+0.6
1,557,567	+		HGI48_RS07320	0.78	-0.6
1,557,567	+		HGI48_RS07320	0.78	-1.5
1,557,567	+		HGI48_RS07320	0.78	-2.9
1,557,567	+		HGI48_RS07320	0.78	+0.5
1,557,568	-		HGI48_RS07320	0.78	+0.0
1,557,568	-		HGI48_RS07320	0.78	-2.2
1,557,568	-		HGI48_RS07320	0.78	-1.2
1,557,568	-		HGI48_RS07320	0.78	-1.5
1,557,568	-		HGI48_RS07320	0.78	-1.2
1,557,705	+		HGI48_RS07320	0.86	+0.3
1,557,705	+		HGI48_RS07320	0.86	+0.2
1,557,705	+		HGI48_RS07320	0.86	+0.9
1,557,705	+		HGI48_RS07320	0.86	-1.2
1,557,705	+		HGI48_RS07320	0.86	+1.7
1,557,705	+		HGI48_RS07320	0.86	+0.4
1,557,705	+		HGI48_RS07320	0.86	-1.5
1,557,705	+		HGI48_RS07320	0.86	-1.5
1,557,705	+		HGI48_RS07320	0.86	+0.8
1,557,705	+		HGI48_RS07320	0.86	-0.2
1,557,705	+		HGI48_RS07320	0.86	+0.8
1,557,706	-				-0.2
1,557,706	-		HGI48_RS07320	0.86	-1.8
1,557,706	-		HGI48_RS07320	0.86	+0.8
1,557,706	-		HGI48_RS07320	0.86	+1.3
1,557,706	-		HGI48_RS07320	0.86	-0.4
1,557,706	-		HGI48_RS07320	0.86	-1.7
1,557,706	-		HGI48_RS07320	0.86	-1.2
1,557,706	-		HGI48_RS07320	0.86	+0.4
1,557,706	-		HGI48_RS07320	0.86	+2.1
1,557,706	-		HGI48_RS07320	0.86	-0.6
1,557,708	+		HGI48_RS07320	0.86	+0.8
1,557,708	+		HGI48_RS07320	0.86	-1.8
1,557,708	+		HGI48_RS07320	0.86	+0.5
1,557,708	+		HGI48_RS07320	0.86	-3.8
1,557,708	+				-0.2
1,557,708	+		HGI48_RS07320	0.86	-1.5
1,557,709	-		HGI48_RS07320	0.86	-0.2
1,557,709	-		HGI48_RS07320	0.86	-1.2
1,557,709	-		HGI48_RS07320	0.86	-2.4
1,557,709	-				-0.8
1,557,709	-		HGI48_RS07320	0.86	+1.7
1,557,709	-		HGI48_RS07320	0.86	+2.1
1,557,709	-		HGI48_RS07320	0.86	-2.2
1,557,709	-		HGI48_RS07320	0.86	-2.5
1,557,709	-		HGI48_RS07320	0.86	+0.8
1,557,755	+		HGI48_RS07320	0.89	-2.6
1,557,755	+		HGI48_RS07320	0.89	-1.8
1,557,755	+				+0.8
1,557,780	+				+1.4
1,557,781	-				+0.3
1,557,783	+				+3.0
1,557,783	+				+2.7
1,557,798	-				-1.8
1,557,903	+				-2.0
1,557,903	+				+0.8
1,557,903	+				-1.2
1,557,904	-				-1.8
1,557,904	-				-1.0
1,557,904	-				+0.4
1,557,908	-				-0.7
1,557,914	+				-0.2
1,557,946	+				+0.4
1,557,946	+				+0.6
1,557,946	+				-2.0
1,557,946	+				-0.8
1,557,946	+				+1.4
1,557,947	-				-1.2
1,557,955	+				-0.7
1,557,955	+				+0.3
1,557,955	+				-0.5
1,557,955	+				-2.5
1,557,956	-				-0.8
1,557,956	-				-2.2
1,558,010	+				+1.5
1,558,010	+				-0.0
1,558,010	+				-0.8
1,558,011	-				+0.3
1,558,011	-				+0.7
1,558,011	-				-1.3
1,558,011	-				-1.2
1,558,011	-				-0.6
1,558,011	-				-2.4
1,558,011	-				+3.2
1,558,025	+				-1.2
1,558,026	-				-0.2
1,558,026	-				+0.7
1,558,026	-				-1.6
1,558,026	-				+0.2
1,558,041	-				+0.3
1,558,186	-		HGI48_RS07325	0.15	-2.6
1,558,343	-		HGI48_RS07325	0.24	-2.6
1,558,343	-				+2.4
1,558,343	-		HGI48_RS07325	0.24	-1.2
1,558,501	+				+0.8
1,558,553	+		HGI48_RS07325	0.37	-0.3
1,558,780	+		HGI48_RS07325	0.51	-1.2
1,558,809	-		HGI48_RS07325	0.52	+0.4
1,558,809	-		HGI48_RS07325	0.52	+1.4
1,558,923	-		HGI48_RS07325	0.59	+2.1