Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06995

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS06990 and HGI48_RS06995 are separated by 3 nucleotidesHGI48_RS06995 and HGI48_RS07000 are separated by 28 nucleotides HGI48_RS06990: HGI48_RS06990 - phosphoenolpyruvate mutase, at 1,483,499 to 1,484,392 _RS06990 HGI48_RS06995: HGI48_RS06995 - phosphonopyruvate decarboxylase, at 1,484,396 to 1,485,514 _RS06995 HGI48_RS07000: HGI48_RS07000 - pyridoxal phosphate-dependent aminotransferase, at 1,485,543 to 1,486,724 _RS07000 Position (kb) 1484 1485 1486Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1483.408 kb on + strandat 1483.426 kb on - strandat 1483.442 kb on + strandat 1483.504 kb on + strandat 1483.504 kb on + strandat 1483.504 kb on + strandat 1483.585 kb on + strandat 1483.586 kb on - strandat 1483.724 kb on - strand, within HGI48_RS06990at 1483.803 kb on + strand, within HGI48_RS06990at 1483.942 kb on + strand, within HGI48_RS06990at 1483.943 kb on - strand, within HGI48_RS06990at 1483.989 kb on + strand, within HGI48_RS06990at 1483.990 kb on - strand, within HGI48_RS06990at 1484.068 kb on - strand, within HGI48_RS06990at 1484.068 kb on - strand, within HGI48_RS06990at 1484.146 kb on - strand, within HGI48_RS06990at 1484.150 kb on - strand, within HGI48_RS06990at 1484.150 kb on - strand, within HGI48_RS06990at 1484.150 kb on - strand, within HGI48_RS06990at 1484.156 kb on + strand, within HGI48_RS06990at 1484.156 kb on + strand, within HGI48_RS06990at 1484.157 kb on - strand, within HGI48_RS06990at 1484.157 kb on - strand, within HGI48_RS06990at 1484.157 kb on - strand, within HGI48_RS06990at 1484.157 kb on - strand, within HGI48_RS06990at 1484.157 kb on - strand, within HGI48_RS06990at 1484.159 kb on + strand, within HGI48_RS06990at 1484.159 kb on + strand, within HGI48_RS06990at 1484.159 kb on + strand, within HGI48_RS06990at 1484.159 kb on + strand, within HGI48_RS06990at 1484.160 kb on - strand, within HGI48_RS06990at 1484.206 kb on + strand, within HGI48_RS06990at 1484.206 kb on + strand, within HGI48_RS06990at 1484.207 kb on - strand, within HGI48_RS06990at 1484.266 kb on + strand, within HGI48_RS06990at 1484.266 kb on + strand, within HGI48_RS06990at 1484.267 kb on - strand, within HGI48_RS06990at 1484.267 kb on - strand, within HGI48_RS06990at 1484.268 kb on + strand, within HGI48_RS06990at 1484.306 kb on - strandat 1484.311 kb on + strandat 1484.519 kb on + strand, within HGI48_RS06995at 1484.519 kb on + strand, within HGI48_RS06995at 1484.519 kb on + strand, within HGI48_RS06995at 1484.519 kb on + strand, within HGI48_RS06995at 1484.520 kb on - strand, within HGI48_RS06995at 1484.520 kb on - strand, within HGI48_RS06995at 1484.520 kb on - strand, within HGI48_RS06995at 1484.617 kb on - strand, within HGI48_RS06995at 1484.629 kb on - strand, within HGI48_RS06995at 1484.629 kb on - strand, within HGI48_RS06995at 1484.708 kb on - strand, within HGI48_RS06995at 1484.758 kb on - strand, within HGI48_RS06995at 1484.800 kb on + strand, within HGI48_RS06995at 1484.801 kb on - strand, within HGI48_RS06995at 1484.806 kb on + strand, within HGI48_RS06995at 1484.807 kb on - strand, within HGI48_RS06995at 1484.807 kb on - strand, within HGI48_RS06995at 1484.807 kb on - strand, within HGI48_RS06995at 1484.807 kb on - strand, within HGI48_RS06995at 1484.830 kb on + strand, within HGI48_RS06995at 1485.026 kb on - strand, within HGI48_RS06995at 1485.026 kb on - strandat 1485.026 kb on - strand, within HGI48_RS06995at 1485.067 kb on + strand, within HGI48_RS06995at 1485.067 kb on + strand, within HGI48_RS06995at 1485.105 kb on + strand, within HGI48_RS06995at 1485.105 kb on + strand, within HGI48_RS06995at 1485.105 kb on + strand, within HGI48_RS06995at 1485.106 kb on - strand, within HGI48_RS06995at 1485.107 kb on + strand, within HGI48_RS06995at 1485.108 kb on - strandat 1485.108 kb on - strand, within HGI48_RS06995at 1485.108 kb on - strand, within HGI48_RS06995at 1485.108 kb on - strand, within HGI48_RS06995at 1485.108 kb on - strand, within HGI48_RS06995at 1485.134 kb on - strand, within HGI48_RS06995at 1485.192 kb on + strand, within HGI48_RS06995at 1485.193 kb on - strand, within HGI48_RS06995at 1485.193 kb on - strand, within HGI48_RS06995at 1485.193 kb on - strand, within HGI48_RS06995at 1485.236 kb on + strand, within HGI48_RS06995at 1485.236 kb on + strand, within HGI48_RS06995at 1485.237 kb on - strand, within HGI48_RS06995at 1485.237 kb on - strand, within HGI48_RS06995at 1485.237 kb on - strand, within HGI48_RS06995at 1485.308 kb on + strand, within HGI48_RS06995at 1485.308 kb on + strand, within HGI48_RS06995at 1485.308 kb on + strand, within HGI48_RS06995at 1485.308 kb on + strand, within HGI48_RS06995at 1485.309 kb on - strandat 1485.309 kb on - strand, within HGI48_RS06995at 1485.310 kb on + strand, within HGI48_RS06995at 1485.310 kb on + strand, within HGI48_RS06995at 1485.310 kb on + strand, within HGI48_RS06995at 1485.310 kb on + strand, within HGI48_RS06995at 1485.310 kb on + strand, within HGI48_RS06995at 1485.311 kb on - strand, within HGI48_RS06995at 1485.311 kb on - strand, within HGI48_RS06995at 1485.323 kb on + strand, within HGI48_RS06995at 1485.324 kb on - strand, within HGI48_RS06995at 1485.324 kb on - strand, within HGI48_RS06995at 1485.324 kb on - strand, within HGI48_RS06995at 1485.406 kb on + strandat 1485.407 kb on - strandat 1485.407 kb on - strandat 1485.513 kb on - strandat 1485.548 kb on + strandat 1485.549 kb on - strandat 1485.552 kb on + strandat 1485.552 kb on + strandat 1485.552 kb on + strandat 1485.553 kb on - strandat 1485.553 kb on - strandat 1485.553 kb on - strandat 1485.598 kb on + strandat 1485.599 kb on - strandat 1485.599 kb on - strandat 1485.599 kb on - strandat 1485.599 kb on - strandat 1485.655 kb on + strandat 1485.655 kb on + strandat 1485.655 kb on + strandat 1485.656 kb on - strandat 1485.747 kb on - strand, within HGI48_RS07000at 1485.851 kb on + strand, within HGI48_RS07000at 1485.851 kb on + strand, within HGI48_RS07000at 1485.851 kb on + strand, within HGI48_RS07000at 1485.852 kb on - strand, within HGI48_RS07000at 1485.854 kb on + strand, within HGI48_RS07000at 1485.854 kb on + strand, within HGI48_RS07000at 1485.855 kb on - strand, within HGI48_RS07000at 1485.855 kb on - strand, within HGI48_RS07000at 1485.855 kb on - strand, within HGI48_RS07000at 1485.894 kb on + strand, within HGI48_RS07000at 1485.894 kb on + strand, within HGI48_RS07000at 1485.894 kb on + strandat 1485.894 kb on + strand, within HGI48_RS07000at 1485.894 kb on + strand, within HGI48_RS07000at 1485.894 kb on + strand, within HGI48_RS07000at 1485.895 kb on - strandat 1485.895 kb on - strand, within HGI48_RS07000at 1485.895 kb on - strand, within HGI48_RS07000at 1485.895 kb on - strand, within HGI48_RS07000at 1485.895 kb on - strand, within HGI48_RS07000at 1485.895 kb on - strand, within HGI48_RS07000at 1485.895 kb on - strand, within HGI48_RS07000at 1485.895 kb on - strand, within HGI48_RS07000at 1485.896 kb on + strand, within HGI48_RS07000at 1485.896 kb on + strand, within HGI48_RS07000at 1485.896 kb on + strandat 1485.896 kb on + strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.897 kb on - strand, within HGI48_RS07000at 1485.903 kb on + strand, within HGI48_RS07000at 1485.903 kb on + strand, within HGI48_RS07000at 1485.903 kb on + strand, within HGI48_RS07000at 1485.904 kb on - strand, within HGI48_RS07000at 1485.958 kb on + strand, within HGI48_RS07000at 1486.012 kb on + strand, within HGI48_RS07000at 1486.012 kb on + strand, within HGI48_RS07000at 1486.012 kb on + strand, within HGI48_RS07000at 1486.012 kb on + strand, within HGI48_RS07000at 1486.013 kb on - strand, within HGI48_RS07000at 1486.062 kb on + strand, within HGI48_RS07000at 1486.063 kb on - strand, within HGI48_RS07000at 1486.063 kb on - strand, within HGI48_RS07000at 1486.063 kb on - strand, within HGI48_RS07000at 1486.130 kb on - strand, within HGI48_RS07000at 1486.130 kb on - strand, within HGI48_RS07000at 1486.130 kb on - strand, within HGI48_RS07000at 1486.160 kb on + strand, within HGI48_RS07000at 1486.209 kb on - strand, within HGI48_RS07000at 1486.217 kb on + strand, within HGI48_RS07000at 1486.255 kb on + strand, within HGI48_RS07000at 1486.281 kb on - strand, within HGI48_RS07000at 1486.324 kb on - strand, within HGI48_RS07000at 1486.324 kb on - strand, within HGI48_RS07000at 1486.337 kb on + strand, within HGI48_RS07000at 1486.337 kb on + strand, within HGI48_RS07000at 1486.345 kb on - strand, within HGI48_RS07000at 1486.345 kb on - strandat 1486.354 kb on + strand, within HGI48_RS07000at 1486.354 kb on + strandat 1486.355 kb on - strand, within HGI48_RS07000at 1486.447 kb on + strand, within HGI48_RS07000

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,483,408 + +2.5
1,483,426 - +3.0
1,483,442 + +2.1
1,483,504 + +1.1
1,483,504 + +1.1
1,483,504 + +1.3
1,483,585 + -1.4
1,483,586 - -0.1
1,483,724 - HGI48_RS06990 0.25 +1.0
1,483,803 + HGI48_RS06990 0.34 -2.1
1,483,942 + HGI48_RS06990 0.50 -1.9
1,483,943 - HGI48_RS06990 0.50 -0.6
1,483,989 + HGI48_RS06990 0.55 +1.3
1,483,990 - HGI48_RS06990 0.55 -1.7
1,484,068 - HGI48_RS06990 0.64 +2.3
1,484,068 - HGI48_RS06990 0.64 -2.4
1,484,146 - HGI48_RS06990 0.72 +0.3
1,484,150 - HGI48_RS06990 0.73 +1.6
1,484,150 - HGI48_RS06990 0.73 +0.5
1,484,150 - HGI48_RS06990 0.73 -1.7
1,484,156 + HGI48_RS06990 0.73 +0.6
1,484,156 + HGI48_RS06990 0.73 -2.7
1,484,157 - HGI48_RS06990 0.74 +1.6
1,484,157 - HGI48_RS06990 0.74 -1.4
1,484,157 - HGI48_RS06990 0.74 -0.1
1,484,157 - HGI48_RS06990 0.74 -0.7
1,484,157 - HGI48_RS06990 0.74 -2.7
1,484,159 + HGI48_RS06990 0.74 -1.1
1,484,159 + HGI48_RS06990 0.74 -1.7
1,484,159 + HGI48_RS06990 0.74 -0.3
1,484,159 + HGI48_RS06990 0.74 +2.3
1,484,160 - HGI48_RS06990 0.74 -0.7
1,484,206 + HGI48_RS06990 0.79 -0.0
1,484,206 + HGI48_RS06990 0.79 -1.7
1,484,207 - HGI48_RS06990 0.79 +1.2
1,484,266 + HGI48_RS06990 0.86 -0.4
1,484,266 + HGI48_RS06990 0.86 +0.6
1,484,267 - HGI48_RS06990 0.86 +2.2
1,484,267 - HGI48_RS06990 0.86 +2.4
1,484,268 + HGI48_RS06990 0.86 -1.4
1,484,306 - +2.3
1,484,311 + +0.5
1,484,519 + HGI48_RS06995 0.11 +0.3
1,484,519 + HGI48_RS06995 0.11 +1.8
1,484,519 + HGI48_RS06995 0.11 +0.1
1,484,519 + HGI48_RS06995 0.11 -1.4
1,484,520 - HGI48_RS06995 0.11 +3.1
1,484,520 - HGI48_RS06995 0.11 -2.1
1,484,520 - HGI48_RS06995 0.11 -1.1
1,484,617 - HGI48_RS06995 0.20 -0.3
1,484,629 - HGI48_RS06995 0.21 -0.7
1,484,629 - HGI48_RS06995 0.21 +0.9
1,484,708 - HGI48_RS06995 0.28 +0.6
1,484,758 - HGI48_RS06995 0.32 +1.0
1,484,800 + HGI48_RS06995 0.36 -2.8
1,484,801 - HGI48_RS06995 0.36 +0.4
1,484,806 + HGI48_RS06995 0.37 -1.1
1,484,807 - HGI48_RS06995 0.37 -0.1
1,484,807 - HGI48_RS06995 0.37 -0.2
1,484,807 - HGI48_RS06995 0.37 -1.9
1,484,807 - HGI48_RS06995 0.37 +0.2
1,484,830 + HGI48_RS06995 0.39 +1.9
1,485,026 - HGI48_RS06995 0.56 +1.6
1,485,026 - +2.6
1,485,026 - HGI48_RS06995 0.56 -3.2
1,485,067 + HGI48_RS06995 0.60 -0.7
1,485,067 + HGI48_RS06995 0.60 +2.5
1,485,105 + HGI48_RS06995 0.63 +1.3
1,485,105 + HGI48_RS06995 0.63 +0.6
1,485,105 + HGI48_RS06995 0.63 +1.1
1,485,106 - HGI48_RS06995 0.63 +1.0
1,485,107 + HGI48_RS06995 0.64 -2.6
1,485,108 - -0.7
1,485,108 - HGI48_RS06995 0.64 -0.5
1,485,108 - HGI48_RS06995 0.64 +0.4
1,485,108 - HGI48_RS06995 0.64 -2.6
1,485,108 - HGI48_RS06995 0.64 +0.9
1,485,134 - HGI48_RS06995 0.66 -1.9
1,485,192 + HGI48_RS06995 0.71 +0.6
1,485,193 - HGI48_RS06995 0.71 +0.7
1,485,193 - HGI48_RS06995 0.71 +1.0
1,485,193 - HGI48_RS06995 0.71 -1.4
1,485,236 + HGI48_RS06995 0.75 -1.9
1,485,236 + HGI48_RS06995 0.75 +0.7
1,485,237 - HGI48_RS06995 0.75 -1.9
1,485,237 - HGI48_RS06995 0.75 -2.4
1,485,237 - HGI48_RS06995 0.75 +0.6
1,485,308 + HGI48_RS06995 0.82 -1.1
1,485,308 + HGI48_RS06995 0.82 -0.9
1,485,308 + HGI48_RS06995 0.82 -1.1
1,485,308 + HGI48_RS06995 0.82 +0.1
1,485,309 - +3.4
1,485,309 - HGI48_RS06995 0.82 -1.7
1,485,310 + HGI48_RS06995 0.82 +0.0
1,485,310 + HGI48_RS06995 0.82 +0.0
1,485,310 + HGI48_RS06995 0.82 -1.4
1,485,310 + HGI48_RS06995 0.82 -2.3
1,485,310 + HGI48_RS06995 0.82 -2.6
1,485,311 - HGI48_RS06995 0.82 -1.7
1,485,311 - HGI48_RS06995 0.82 +2.7
1,485,323 + HGI48_RS06995 0.83 -1.4
1,485,324 - HGI48_RS06995 0.83 +1.4
1,485,324 - HGI48_RS06995 0.83 -1.7
1,485,324 - HGI48_RS06995 0.83 +1.0
1,485,406 + -2.4
1,485,407 - -1.4
1,485,407 - -2.6
1,485,513 - -1.1
1,485,548 + +1.0
1,485,549 - -0.7
1,485,552 + -2.3
1,485,552 + -0.0
1,485,552 + +0.9
1,485,553 - -1.1
1,485,553 - +0.9
1,485,553 - +1.6
1,485,598 + -0.1
1,485,599 - +1.1
1,485,599 - +0.7
1,485,599 - +1.1
1,485,599 - -1.1
1,485,655 + +0.5
1,485,655 + -0.5
1,485,655 + +1.3
1,485,656 - -1.4
1,485,747 - HGI48_RS07000 0.17 +2.6
1,485,851 + HGI48_RS07000 0.26 +0.3
1,485,851 + HGI48_RS07000 0.26 +1.1
1,485,851 + HGI48_RS07000 0.26 -1.1
1,485,852 - HGI48_RS07000 0.26 -2.3
1,485,854 + HGI48_RS07000 0.26 +1.6
1,485,854 + HGI48_RS07000 0.26 -1.9
1,485,855 - HGI48_RS07000 0.26 -2.3
1,485,855 - HGI48_RS07000 0.26 -1.1
1,485,855 - HGI48_RS07000 0.26 +0.9
1,485,894 + HGI48_RS07000 0.30 +0.9
1,485,894 + HGI48_RS07000 0.30 +0.7
1,485,894 + -0.7
1,485,894 + HGI48_RS07000 0.30 -2.6
1,485,894 + HGI48_RS07000 0.30 -1.9
1,485,894 + HGI48_RS07000 0.30 +0.3
1,485,895 - +3.0
1,485,895 - HGI48_RS07000 0.30 +0.3
1,485,895 - HGI48_RS07000 0.30 +0.4
1,485,895 - HGI48_RS07000 0.30 -0.9
1,485,895 - HGI48_RS07000 0.30 +1.8
1,485,895 - HGI48_RS07000 0.30 +2.3
1,485,895 - HGI48_RS07000 0.30 -1.7
1,485,895 - HGI48_RS07000 0.30 -1.1
1,485,896 + HGI48_RS07000 0.30 -0.4
1,485,896 + HGI48_RS07000 0.30 -3.9
1,485,896 + +1.3
1,485,896 + HGI48_RS07000 0.30 +0.6
1,485,897 - HGI48_RS07000 0.30 +1.1
1,485,897 - HGI48_RS07000 0.30 -1.7
1,485,897 - HGI48_RS07000 0.30 +1.9
1,485,897 - HGI48_RS07000 0.30 -1.1
1,485,897 - HGI48_RS07000 0.30 +0.6
1,485,897 - HGI48_RS07000 0.30 -1.7
1,485,897 - HGI48_RS07000 0.30 +0.4
1,485,897 - HGI48_RS07000 0.30 -2.1
1,485,897 - HGI48_RS07000 0.30 +0.9
1,485,897 - HGI48_RS07000 0.30 +0.8
1,485,897 - HGI48_RS07000 0.30 -2.9
1,485,897 - HGI48_RS07000 0.30 +1.3
1,485,897 - HGI48_RS07000 0.30 +2.2
1,485,897 - HGI48_RS07000 0.30 -1.9
1,485,903 + HGI48_RS07000 0.30 +1.3
1,485,903 + HGI48_RS07000 0.30 -1.0
1,485,903 + HGI48_RS07000 0.30 +0.7
1,485,904 - HGI48_RS07000 0.31 -1.1
1,485,958 + HGI48_RS07000 0.35 -2.3
1,486,012 + HGI48_RS07000 0.40 +1.0
1,486,012 + HGI48_RS07000 0.40 -1.1
1,486,012 + HGI48_RS07000 0.40 +0.1
1,486,012 + HGI48_RS07000 0.40 +1.0
1,486,013 - HGI48_RS07000 0.40 +0.3
1,486,062 + HGI48_RS07000 0.44 +2.0
1,486,063 - HGI48_RS07000 0.44 +1.5
1,486,063 - HGI48_RS07000 0.44 +0.2
1,486,063 - HGI48_RS07000 0.44 +2.0
1,486,130 - HGI48_RS07000 0.50 -0.9
1,486,130 - HGI48_RS07000 0.50 -1.7
1,486,130 - HGI48_RS07000 0.50 -1.9
1,486,160 + HGI48_RS07000 0.52 +0.7
1,486,209 - HGI48_RS07000 0.56 -0.1
1,486,217 + HGI48_RS07000 0.57 +2.2
1,486,255 + HGI48_RS07000 0.60 +1.5
1,486,281 - HGI48_RS07000 0.62 -1.9
1,486,324 - HGI48_RS07000 0.66 +1.4
1,486,324 - HGI48_RS07000 0.66 -1.2
1,486,337 + HGI48_RS07000 0.67 -0.8
1,486,337 + HGI48_RS07000 0.67 -1.1
1,486,345 - HGI48_RS07000 0.68 +0.4
1,486,345 - +2.2
1,486,354 + HGI48_RS07000 0.69 +3.2
1,486,354 + -0.7
1,486,355 - HGI48_RS07000 0.69 -2.3
1,486,447 + HGI48_RS07000 0.76 -1.7

Or see this region's nucleotide sequence