Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05415

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,134,654	+		HGI48_RS05410	0.60	-1.0
1,134,654	+		HGI48_RS05410	0.60	+1.2
1,134,664	+		HGI48_RS05410	0.61	-1.4
1,134,664	+		HGI48_RS05410	0.61	-1.4
1,134,664	+		HGI48_RS05410	0.61	-1.0
1,134,665	-		HGI48_RS05410	0.61	-1.6
1,134,665	-		HGI48_RS05410	0.61	-0.0
1,134,670	-		HGI48_RS05410	0.62	+0.3
1,134,670	-		HGI48_RS05410	0.62	-1.6
1,134,672	-		HGI48_RS05410	0.62	+1.8
1,134,672	-		HGI48_RS05410	0.62	+0.9
1,134,754	+		HGI48_RS05410	0.69	+0.1
1,134,755	-		HGI48_RS05410	0.69	+0.7
1,134,773	+		HGI48_RS05410	0.70	+0.5
1,134,773	+		HGI48_RS05410	0.70	+0.6
1,134,774	-		HGI48_RS05410	0.70	-1.4
1,134,774	-		HGI48_RS05410	0.70	-1.4
1,134,776	+		HGI48_RS05410	0.70	-1.8
1,134,777	-		HGI48_RS05410	0.70	-1.4
1,134,777	-		HGI48_RS05410	0.70	+0.6
1,134,826	-		HGI48_RS05410	0.74	-1.0
1,134,901	+		HGI48_RS05410	0.80	+2.0
1,134,901	+		HGI48_RS05410	0.80	+1.2
1,134,901	+				-0.6
1,134,916	+		HGI48_RS05410	0.82	+1.5
1,134,917	-		HGI48_RS05410	0.82	+1.6
1,134,957	+				-0.6
1,135,041	-				+2.0
1,135,073	+				-1.4
1,135,073	+				-2.2
1,135,074	-				-0.6
1,135,111	-				-0.6
1,135,164	+				-1.0
1,135,165	-				+0.4
1,135,165	-				+0.1
1,135,165	-				+0.7
1,135,165	-				-2.2
1,135,169	+				-1.6
1,135,241	-				-0.4
1,135,258	+				-2.0
1,135,262	+				-2.8
1,135,262	+				-1.6
1,135,263	-				+2.5
1,135,313	+				+1.4
1,135,314	-				+0.4
1,135,336	-				-2.2
1,135,336	-				+0.6
1,135,336	-				+2.9
1,135,346	+				-0.6
1,135,346	+				+1.1
1,135,347	-				+1.3
1,135,347	-				+2.3
1,135,447	+				+0.8
1,135,447	+				-1.6
1,135,448	-				-1.0
1,135,448	-				-1.4
1,135,529	-				-0.6
1,135,529	-				+0.6
1,135,529	-				-1.6
1,135,532	-				+0.3
1,135,546	+				-1.4
1,135,592	+				+0.7
1,135,593	-				-1.0
1,135,594	+				+1.6
1,135,655	+		HGI48_RS05415	0.11	+0.5
1,135,656	-				-0.6
1,135,656	-		HGI48_RS05415	0.12	-0.9
1,135,797	-		HGI48_RS05415	0.35	+0.2
1,135,797	-		HGI48_RS05415	0.35	+1.7
1,135,797	-		HGI48_RS05415	0.35	+1.7
1,135,800	-				+2.7
1,135,877	+		HGI48_RS05415	0.49	+1.2
1,135,950	+		HGI48_RS05415	0.61	+0.4
1,135,951	-		HGI48_RS05415	0.61	-0.4
1,135,951	-		HGI48_RS05415	0.61	-1.4
1,135,951	-		HGI48_RS05415	0.61	+1.0
1,135,951	-		HGI48_RS05415	0.61	+1.8
1,135,951	-				+3.4
1,135,951	-		HGI48_RS05415	0.61	+1.0
1,135,951	-		HGI48_RS05415	0.61	+1.2
1,135,973	+		HGI48_RS05415	0.65	-1.0
1,135,973	+		HGI48_RS05415	0.65	-1.8
1,135,974	-		HGI48_RS05415	0.65	+1.5
1,135,974	-		HGI48_RS05415	0.65	-1.0
1,135,974	-		HGI48_RS05415	0.65	+0.5
1,135,974	-		HGI48_RS05415	0.65	+0.0
1,135,977	-		HGI48_RS05415	0.65	-2.2
1,135,977	-		HGI48_RS05415	0.65	+0.8
1,135,977	-		HGI48_RS05415	0.65	-3.0
1,136,049	+		HGI48_RS05415	0.77	-1.8
1,136,049	+		HGI48_RS05415	0.77	+0.2
1,136,049	+		HGI48_RS05415	0.77	+0.2
1,136,049	+		HGI48_RS05415	0.77	-2.5
1,136,050	-		HGI48_RS05415	0.78	+0.6
1,136,062	+		HGI48_RS05415	0.80	+0.6
1,136,062	+		HGI48_RS05415	0.80	-1.0
1,136,062	+				+3.4
1,136,062	+		HGI48_RS05415	0.80	+0.6
1,136,062	+				-0.6
1,136,063	-		HGI48_RS05415	0.80	-1.8
1,136,063	-		HGI48_RS05415	0.80	-1.6
1,136,063	-		HGI48_RS05415	0.80	-0.0
1,136,063	-		HGI48_RS05415	0.80	+0.7
1,136,063	-		HGI48_RS05415	0.80	+0.6
1,136,063	-		HGI48_RS05415	0.80	+0.6
1,136,064	+		HGI48_RS05415	0.80	-2.0
1,136,064	+		HGI48_RS05415	0.80	-2.5
1,136,064	+				-0.6
1,136,064	+		HGI48_RS05415	0.80	-2.2
1,136,065	-		HGI48_RS05415	0.80	+1.8
1,136,065	-		HGI48_RS05415	0.80	-1.0
1,136,065	-		HGI48_RS05415	0.80	-1.2
1,136,065	-		HGI48_RS05415	0.80	-0.2
1,136,065	-		HGI48_RS05415	0.80	+2.3
1,136,065	-		HGI48_RS05415	0.80	-1.6
1,136,065	-		HGI48_RS05415	0.80	-0.5
1,136,065	-				-0.0
1,136,067	-		HGI48_RS05415	0.80	+1.4
1,136,073	-		HGI48_RS05415	0.81	-1.4
1,136,101	+		HGI48_RS05415	0.86	-0.1
1,136,185	-				+1.2
1,136,185	-				+1.0
1,136,196	+				+2.2
1,136,226	+				+1.3
1,136,255	+				+1.2
1,136,255	+				+0.7
1,136,256	-				+1.2
1,136,260	-				-1.8
1,136,260	-				+1.0
1,136,285	-				+1.9
1,136,346	-				+0.5
1,136,361	+				-1.8
1,136,390	-				-2.5
1,136,407	-				+1.3
1,136,441	+				-0.0
1,136,450	-				-1.0
1,136,450	-				+2.0
1,136,492	-				+2.7
1,136,492	-				-1.8
1,136,492	-				-1.0
1,136,529	-				+0.4
1,136,533	+				-1.0
1,136,533	+				+3.8
1,136,565	+				-2.4
1,136,612	+				-1.4
1,136,613	-				-2.0
1,136,613	-				-0.0
1,136,632	+				-1.4
1,136,632	+				+0.8
1,136,632	+				+0.1
1,136,632	+				-0.2
1,136,633	-				+1.0
1,136,657	+				-0.2
1,136,657	+				-0.1
1,136,657	+				+1.6
1,136,657	+				+0.1
1,136,657	+				+1.1
1,136,658	-				-3.0
1,136,658	-				-0.6
1,136,658	-				+0.2
1,136,675	+		HGI48_RS05420	0.11	+0.1
1,136,675	+		HGI48_RS05420	0.11	-1.9
1,136,679	+		HGI48_RS05420	0.11	+1.0
1,136,679	+				-0.6
1,136,679	+				+1.7
1,136,680	-		HGI48_RS05420	0.11	+1.1
1,136,680	-				-0.0
1,136,680	-		HGI48_RS05420	0.11	-1.8
1,136,700	-		HGI48_RS05420	0.15	-2.0
1,136,700	-		HGI48_RS05420	0.15	+2.7
1,136,700	-		HGI48_RS05420	0.15	-0.0
1,136,805	-		HGI48_RS05420	0.35	-1.6
1,136,805	-		HGI48_RS05420	0.35	-2.4
1,136,826	+		HGI48_RS05420	0.39	-2.0
1,136,826	+		HGI48_RS05420	0.39	-1.8
1,136,838	+		HGI48_RS05420	0.41	-1.6
1,136,884	-		HGI48_RS05420	0.50	-1.4
1,136,994	-		HGI48_RS05420	0.71	+0.7
1,136,994	-		HGI48_RS05420	0.71	-1.6
1,137,019	+		HGI48_RS05420	0.75	-1.4
1,137,019	+		HGI48_RS05420	0.75	+0.7
1,137,019	+		HGI48_RS05420	0.75	-1.0
1,137,020	-		HGI48_RS05420	0.76	+1.0
1,137,040	+		HGI48_RS05420	0.79	+2.2
1,137,155	+				-1.3
1,137,155	+				-1.6
1,137,156	-				-0.2