Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04395 and HGI48_RS04400 are separated by 83 nucleotides HGI48_RS04400 and HGI48_RS04405 are separated by 357 nucleotides
HGI48_RS04395: HGI48_RS04395 - Dyp-type peroxidase, at 920,744 to 921,643
_RS04395
HGI48_RS04400: HGI48_RS04400 - cysteine synthase CysM, at 921,727 to 922,608
_RS04400
HGI48_RS04405: HGI48_RS04405 - acetylxylan esterase, at 922,966 to 923,769
_RS04405
Position (kb) 921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 920.741 kb on + strand at 920.741 kb on + strand at 920.742 kb on - strand at 920.742 kb on - strand at 920.742 kb on - strand at 920.742 kb on - strand at 920.811 kb on + strand at 920.812 kb on - strand at 920.845 kb on + strand at 920.846 kb on - strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand at 921.251 kb on + strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.453 kb on - strand, within HGI48_RS04395 at 921.482 kb on + strand, within HGI48_RS04395 at 921.482 kb on + strand, within HGI48_RS04395 at 921.494 kb on + strand, within HGI48_RS04395 at 921.495 kb on - strand, within HGI48_RS04395 at 921.510 kb on - strand, within HGI48_RS04395 at 921.510 kb on - strand at 921.510 kb on - strand, within HGI48_RS04395 at 921.581 kb on - strand at 921.602 kb on + strand at 921.603 kb on - strand at 921.603 kb on - strand at 921.639 kb on + strand at 921.639 kb on + strand at 921.639 kb on + strand at 921.640 kb on - strand at 921.640 kb on - strand at 921.640 kb on - strand at 921.640 kb on - strand at 921.641 kb on + strand at 921.658 kb on - strand at 921.757 kb on - strand at 921.773 kb on + strand at 921.773 kb on + strand at 922.043 kb on - strand, within HGI48_RS04400 at 922.319 kb on + strand, within HGI48_RS04400 at 922.320 kb on - strand, within HGI48_RS04400 at 922.320 kb on - strand, within HGI48_RS04400 at 922.372 kb on + strand, within HGI48_RS04400 at 922.372 kb on + strand, within HGI48_RS04400 at 922.372 kb on + strand, within HGI48_RS04400 at 922.373 kb on - strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.383 kb on + strand, within HGI48_RS04400 at 922.404 kb on - strand, within HGI48_RS04400 at 922.414 kb on - strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand at 922.420 kb on - strand at 922.420 kb on - strand, within HGI48_RS04400 at 922.420 kb on - strand, within HGI48_RS04400 at 922.420 kb on - strand, within HGI48_RS04400 at 922.420 kb on - strand, within HGI48_RS04400 at 922.634 kb on - strand at 922.635 kb on + strand at 922.636 kb on - strand at 922.636 kb on - strand at 922.727 kb on + strand at 922.744 kb on + strand at 922.758 kb on + strand at 922.758 kb on + strand at 922.758 kb on + strand at 922.759 kb on - strand at 922.759 kb on - strand at 922.780 kb on + strand at 922.781 kb on - strand at 922.781 kb on - strand at 922.781 kb on - strand at 922.781 kb on - strand at 922.788 kb on + strand at 922.855 kb on - strand at 922.855 kb on - strand at 922.894 kb on + strand at 922.894 kb on + strand at 922.915 kb on + strand at 922.915 kb on + strand at 922.916 kb on - strand at 922.916 kb on - strand at 922.916 kb on - strand at 922.916 kb on - strand at 922.917 kb on + strand at 922.917 kb on + strand at 922.917 kb on + strand at 922.917 kb on + strand at 922.917 kb on + strand at 922.917 kb on + strand at 922.917 kb on + strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.918 kb on - strand at 922.923 kb on + strand at 922.923 kb on + strand at 922.924 kb on - strand at 922.955 kb on - strand at 923.037 kb on + strand at 923.038 kb on - strand at 923.073 kb on + strand, within HGI48_RS04405 at 923.073 kb on + strand, within HGI48_RS04405 at 923.074 kb on - strand, within HGI48_RS04405 at 923.089 kb on + strand, within HGI48_RS04405 at 923.089 kb on + strand, within HGI48_RS04405 at 923.118 kb on + strand, within HGI48_RS04405 at 923.125 kb on - strand, within HGI48_RS04405 at 923.125 kb on - strand at 923.125 kb on - strand, within HGI48_RS04405 at 923.218 kb on + strand at 923.218 kb on + strand, within HGI48_RS04405 at 923.218 kb on + strand, within HGI48_RS04405 at 923.218 kb on + strand, within HGI48_RS04405 at 923.218 kb on + strand, within HGI48_RS04405 at 923.218 kb on + strand, within HGI48_RS04405 at 923.218 kb on + strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.219 kb on - strand, within HGI48_RS04405 at 923.223 kb on + strand, within HGI48_RS04405 at 923.223 kb on + strand, within HGI48_RS04405 at 923.224 kb on - strand, within HGI48_RS04405 at 923.260 kb on + strand, within HGI48_RS04405 at 923.260 kb on + strand, within HGI48_RS04405 at 923.261 kb on - strand at 923.285 kb on + strand, within HGI48_RS04405 at 923.285 kb on + strand, within HGI48_RS04405 at 923.286 kb on - strand, within HGI48_RS04405 at 923.286 kb on - strand at 923.341 kb on + strand, within HGI48_RS04405 at 923.352 kb on + strand, within HGI48_RS04405 at 923.353 kb on - strand, within HGI48_RS04405 at 923.353 kb on - strand, within HGI48_RS04405 at 923.353 kb on - strand, within HGI48_RS04405 at 923.368 kb on - strand, within HGI48_RS04405 at 923.433 kb on + strand at 923.433 kb on + strand, within HGI48_RS04405 at 923.433 kb on + strand, within HGI48_RS04405 at 923.449 kb on + strand, within HGI48_RS04405 at 923.449 kb on + strand, within HGI48_RS04405 at 923.449 kb on + strand at 923.455 kb on + strand, within HGI48_RS04405 at 923.455 kb on + strand, within HGI48_RS04405 at 923.456 kb on - strand, within HGI48_RS04405 at 923.456 kb on - strand, within HGI48_RS04405 at 923.456 kb on - strand at 923.478 kb on + strand, within HGI48_RS04405 at 923.499 kb on + strand, within HGI48_RS04405 at 923.500 kb on - strand, within HGI48_RS04405 at 923.562 kb on + strand, within HGI48_RS04405
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 920,741 + +0.0 920,741 + -0.6 920,742 - -0.6 920,742 - +0.7 920,742 - +0.3 920,742 - -1.0 920,811 + -1.0 920,812 - +1.0 920,845 + +1.0 920,846 - HGI48_RS04395 0.11 +2.2 921,251 + HGI48_RS04395 0.56 -2.1 921,251 + HGI48_RS04395 0.56 +0.8 921,251 + HGI48_RS04395 0.56 +0.6 921,251 + HGI48_RS04395 0.56 -0.6 921,251 + +2.4 921,251 + HGI48_RS04395 0.56 +0.1 921,252 - HGI48_RS04395 0.56 -0.8 921,252 - HGI48_RS04395 0.56 -1.6 921,252 - HGI48_RS04395 0.56 +0.0 921,252 - -0.6 921,252 - HGI48_RS04395 0.56 -1.6 921,252 - +1.8 921,252 - HGI48_RS04395 0.56 -1.6 921,252 - HGI48_RS04395 0.56 -2.1 921,453 - HGI48_RS04395 0.79 -2.1 921,482 + HGI48_RS04395 0.82 -2.8 921,482 + HGI48_RS04395 0.82 +1.0 921,494 + HGI48_RS04395 0.83 +0.9 921,495 - HGI48_RS04395 0.83 +0.0 921,510 - HGI48_RS04395 0.85 -1.2 921,510 - +0.0 921,510 - HGI48_RS04395 0.85 +0.7 921,581 - +0.1 921,602 + +1.0 921,603 - +0.2 921,603 - +1.4 921,639 + +1.3 921,639 + +0.7 921,639 + -2.4 921,640 - -0.7 921,640 - -2.1 921,640 - -1.6 921,640 - -0.6 921,641 + +1.0 921,658 - -2.3 921,757 - +3.1 921,773 + +0.0 921,773 + -3.0 922,043 - HGI48_RS04400 0.36 -0.5 922,319 + HGI48_RS04400 0.67 +0.7 922,320 - HGI48_RS04400 0.67 +2.3 922,320 - HGI48_RS04400 0.67 -2.3 922,372 + HGI48_RS04400 0.73 +0.8 922,372 + HGI48_RS04400 0.73 +0.2 922,372 + HGI48_RS04400 0.73 +0.2 922,373 - HGI48_RS04400 0.73 -1.3 922,374 + HGI48_RS04400 0.73 -2.1 922,374 + HGI48_RS04400 0.73 +1.0 922,374 + HGI48_RS04400 0.73 +1.0 922,374 + HGI48_RS04400 0.73 -2.3 922,374 + HGI48_RS04400 0.73 -2.0 922,383 + HGI48_RS04400 0.74 +1.5 922,404 - HGI48_RS04400 0.77 +1.5 922,414 - HGI48_RS04400 0.78 -1.3 922,419 + HGI48_RS04400 0.78 -1.8 922,419 + HGI48_RS04400 0.78 +0.3 922,419 + HGI48_RS04400 0.78 -1.3 922,419 + HGI48_RS04400 0.78 +1.6 922,419 + HGI48_RS04400 0.78 -0.8 922,419 + HGI48_RS04400 0.78 +1.3 922,419 + -0.6 922,420 - +0.0 922,420 - HGI48_RS04400 0.79 -2.6 922,420 - HGI48_RS04400 0.79 -1.3 922,420 - HGI48_RS04400 0.79 -1.0 922,420 - HGI48_RS04400 0.79 -1.8 922,634 - -0.4 922,635 + +0.0 922,636 - -2.1 922,636 - -1.0 922,727 + -2.3 922,744 + +0.6 922,758 + -0.3 922,758 + +1.0 922,758 + -0.4 922,759 - +0.6 922,759 - +1.9 922,780 + -0.3 922,781 - -1.3 922,781 - -0.3 922,781 - +1.6 922,781 - -0.0 922,788 + +1.6 922,855 - +0.2 922,855 - +0.1 922,894 + -2.1 922,894 + +1.6 922,915 + +0.0 922,915 + +0.1 922,916 - +1.2 922,916 - +1.8 922,916 - -2.0 922,916 - +1.2 922,917 + -0.6 922,917 + +1.0 922,917 + +1.4 922,917 + -1.3 922,917 + -2.4 922,917 + +2.7 922,917 + -0.0 922,918 - -1.6 922,918 - -0.3 922,918 - +1.1 922,918 - +1.3 922,918 - -2.6 922,918 - +0.8 922,918 - +0.0 922,918 - -1.3 922,923 + +1.4 922,923 + -3.4 922,924 - -1.6 922,955 - +0.5 923,037 + +0.8 923,038 - +1.4 923,073 + HGI48_RS04405 0.13 -2.0 923,073 + HGI48_RS04405 0.13 -2.0 923,074 - HGI48_RS04405 0.13 -1.3 923,089 + HGI48_RS04405 0.15 -2.0 923,089 + HGI48_RS04405 0.15 -1.6 923,118 + HGI48_RS04405 0.19 -1.8 923,125 - HGI48_RS04405 0.20 -2.1 923,125 - -0.6 923,125 - HGI48_RS04405 0.20 +1.1 923,218 + -0.6 923,218 + HGI48_RS04405 0.31 -0.4 923,218 + HGI48_RS04405 0.31 +1.0 923,218 + HGI48_RS04405 0.31 +2.5 923,218 + HGI48_RS04405 0.31 +0.6 923,218 + HGI48_RS04405 0.31 +0.0 923,218 + HGI48_RS04405 0.31 +1.7 923,219 - HGI48_RS04405 0.31 -1.0 923,219 - HGI48_RS04405 0.31 +1.5 923,219 - HGI48_RS04405 0.31 -1.5 923,219 - HGI48_RS04405 0.31 +1.4 923,219 - HGI48_RS04405 0.31 -1.3 923,219 - HGI48_RS04405 0.31 -1.6 923,219 - HGI48_RS04405 0.31 +2.3 923,223 + HGI48_RS04405 0.32 -1.6 923,223 + HGI48_RS04405 0.32 -1.6 923,224 - HGI48_RS04405 0.32 +1.9 923,260 + HGI48_RS04405 0.37 +1.2 923,260 + HGI48_RS04405 0.37 -2.6 923,261 - -0.6 923,285 + HGI48_RS04405 0.40 -0.9 923,285 + HGI48_RS04405 0.40 +0.7 923,286 - HGI48_RS04405 0.40 -1.0 923,286 - +2.8 923,341 + HGI48_RS04405 0.47 +0.0 923,352 + HGI48_RS04405 0.48 -3.1 923,353 - HGI48_RS04405 0.48 -2.0 923,353 - HGI48_RS04405 0.48 -2.1 923,353 - HGI48_RS04405 0.48 -2.0 923,368 - HGI48_RS04405 0.50 -2.7 923,433 + +3.2 923,433 + HGI48_RS04405 0.58 +1.4 923,433 + HGI48_RS04405 0.58 +0.9 923,449 + HGI48_RS04405 0.60 +1.9 923,449 + HGI48_RS04405 0.60 -2.1 923,449 + -0.6 923,455 + HGI48_RS04405 0.61 -1.0 923,455 + HGI48_RS04405 0.61 +3.9 923,456 - HGI48_RS04405 0.61 +2.0 923,456 - HGI48_RS04405 0.61 -0.1 923,456 - +0.0 923,478 + HGI48_RS04405 0.64 +2.3 923,499 + HGI48_RS04405 0.66 +0.8 923,500 - HGI48_RS04405 0.66 +1.3 923,562 + HGI48_RS04405 0.74 -0.1
Or see this region's nucleotide sequence