Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04270 and HGI48_RS04275 overlap by 4 nucleotides HGI48_RS04275 and HGI48_RS04280 are separated by 1 nucleotides HGI48_RS04280 and HGI48_RS04285 are separated by 202 nucleotides HGI48_RS04285 and HGI48_RS04290 are separated by 76 nucleotides
HGI48_RS04270: HGI48_RS04270 - hypothetical protein, at 897,026 to 897,436
_RS04270
HGI48_RS04275: HGI48_RS04275 - hypothetical protein, at 897,433 to 897,669
_RS04275
HGI48_RS04280: HGI48_RS04280 - hypothetical protein, at 897,671 to 898,135
_RS04280
HGI48_RS04285: HGI48_RS04285 - hypothetical protein, at 898,338 to 900,083
_RS04285
HGI48_RS04290: HGI48_RS04290 - tyrosine-type recombinase/integrase, at 900,160 to 901,380
_RS04290
Position (kb) 898
899
900
901 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 897.360 kb on + strand at 897.648 kb on + strand at 897.751 kb on - strand, within HGI48_RS04280 at 897.872 kb on - strand, within HGI48_RS04280 at 898.149 kb on + strand at 898.183 kb on + strand at 898.214 kb on + strand at 898.249 kb on + strand at 898.270 kb on - strand at 898.291 kb on - strand at 898.304 kb on + strand at 898.311 kb on - strand at 898.341 kb on + strand at 898.419 kb on + strand at 898.420 kb on - strand at 898.426 kb on - strand at 898.467 kb on - strand at 898.516 kb on - strand, within HGI48_RS04285 at 898.716 kb on - strand, within HGI48_RS04285 at 898.716 kb on - strand, within HGI48_RS04285 at 898.872 kb on - strand, within HGI48_RS04285 at 899.025 kb on + strand, within HGI48_RS04285 at 899.029 kb on + strand, within HGI48_RS04285 at 899.188 kb on - strand at 899.244 kb on + strand at 899.563 kb on - strand, within HGI48_RS04285 at 899.570 kb on - strand, within HGI48_RS04285 at 899.681 kb on + strand, within HGI48_RS04285 at 899.765 kb on + strand, within HGI48_RS04285 at 899.793 kb on + strand, within HGI48_RS04285 at 899.826 kb on - strand at 899.829 kb on + strand, within HGI48_RS04285 at 899.830 kb on - strand, within HGI48_RS04285 at 900.023 kb on + strand at 900.024 kb on - strand at 900.142 kb on - strand at 900.158 kb on + strand at 900.239 kb on + strand at 900.240 kb on - strand at 900.240 kb on - strand at 900.255 kb on - strand at 900.351 kb on + strand, within HGI48_RS04290 at 900.351 kb on + strand, within HGI48_RS04290 at 900.361 kb on - strand, within HGI48_RS04290 at 900.411 kb on + strand, within HGI48_RS04290 at 900.429 kb on + strand, within HGI48_RS04290 at 900.430 kb on - strand, within HGI48_RS04290 at 900.430 kb on - strand, within HGI48_RS04290 at 900.504 kb on + strand, within HGI48_RS04290 at 900.504 kb on + strand, within HGI48_RS04290 at 900.504 kb on + strand, within HGI48_RS04290 at 900.505 kb on - strand, within HGI48_RS04290 at 900.505 kb on - strand, within HGI48_RS04290 at 900.510 kb on + strand, within HGI48_RS04290 at 900.511 kb on - strand, within HGI48_RS04290 at 900.511 kb on - strand, within HGI48_RS04290 at 900.646 kb on + strand at 900.647 kb on - strand, within HGI48_RS04290 at 900.666 kb on + strand, within HGI48_RS04290 at 900.666 kb on + strand, within HGI48_RS04290 at 900.666 kb on + strand, within HGI48_RS04290 at 900.666 kb on + strand, within HGI48_RS04290 at 900.666 kb on + strand, within HGI48_RS04290 at 900.666 kb on + strand, within HGI48_RS04290 at 900.666 kb on + strand, within HGI48_RS04290 at 900.666 kb on + strand, within HGI48_RS04290 at 900.666 kb on + strand, within HGI48_RS04290 at 900.666 kb on + strand at 900.666 kb on + strand, within HGI48_RS04290 at 900.666 kb on + strand, within HGI48_RS04290 at 900.667 kb on - strand, within HGI48_RS04290 at 900.667 kb on - strand, within HGI48_RS04290 at 900.667 kb on - strand, within HGI48_RS04290 at 900.667 kb on - strand, within HGI48_RS04290 at 900.667 kb on - strand at 900.667 kb on - strand, within HGI48_RS04290 at 900.667 kb on - strand, within HGI48_RS04290 at 900.667 kb on - strand, within HGI48_RS04290 at 900.682 kb on + strand, within HGI48_RS04290 at 900.683 kb on - strand, within HGI48_RS04290 at 900.683 kb on - strand, within HGI48_RS04290 at 900.683 kb on - strand, within HGI48_RS04290 at 900.683 kb on - strand, within HGI48_RS04290 at 900.685 kb on - strand, within HGI48_RS04290 at 900.718 kb on + strand, within HGI48_RS04290 at 900.718 kb on + strand at 900.719 kb on - strand, within HGI48_RS04290 at 900.805 kb on - strand, within HGI48_RS04290 at 900.805 kb on - strand, within HGI48_RS04290 at 900.805 kb on - strand, within HGI48_RS04290 at 900.854 kb on - strand, within HGI48_RS04290 at 900.919 kb on - strand, within HGI48_RS04290 at 900.933 kb on + strand at 900.933 kb on + strand, within HGI48_RS04290 at 900.955 kb on - strand at 900.988 kb on - strand, within HGI48_RS04290 at 900.993 kb on + strand at 901.010 kb on - strand, within HGI48_RS04290
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 897,360 + -0.6 897,648 + -2.1 897,751 - HGI48_RS04280 0.17 -2.0 897,872 - HGI48_RS04280 0.43 -1.0 898,149 + -1.8 898,183 + -0.6 898,214 + +0.1 898,249 + +0.9 898,270 - -1.8 898,291 - +0.2 898,304 + -2.6 898,311 - +1.0 898,341 + -0.7 898,419 + -2.3 898,420 - +1.8 898,426 - +0.4 898,467 - -1.8 898,516 - HGI48_RS04285 0.10 +0.6 898,716 - HGI48_RS04285 0.22 -0.7 898,716 - HGI48_RS04285 0.22 +0.0 898,872 - HGI48_RS04285 0.31 -1.1 899,025 + HGI48_RS04285 0.39 +0.4 899,029 + HGI48_RS04285 0.40 +0.2 899,188 - -0.6 899,244 + -0.6 899,563 - HGI48_RS04285 0.70 +0.9 899,570 - HGI48_RS04285 0.71 +0.3 899,681 + HGI48_RS04285 0.77 -1.6 899,765 + HGI48_RS04285 0.82 -1.2 899,793 + HGI48_RS04285 0.83 -1.3 899,826 - -0.6 899,829 + HGI48_RS04285 0.85 +1.0 899,830 - HGI48_RS04285 0.85 -1.8 900,023 + +0.9 900,024 - -1.4 900,142 - -0.1 900,158 + -1.8 900,239 + -1.8 900,240 - +0.6 900,240 - -1.0 900,255 - +1.4 900,351 + HGI48_RS04290 0.16 -1.6 900,351 + HGI48_RS04290 0.16 -1.3 900,361 - HGI48_RS04290 0.16 +1.0 900,411 + HGI48_RS04290 0.21 +0.6 900,429 + HGI48_RS04290 0.22 -0.1 900,430 - HGI48_RS04290 0.22 -1.0 900,430 - HGI48_RS04290 0.22 +0.6 900,504 + HGI48_RS04290 0.28 +0.9 900,504 + HGI48_RS04290 0.28 +0.2 900,504 + HGI48_RS04290 0.28 -2.3 900,505 - HGI48_RS04290 0.28 +0.7 900,505 - HGI48_RS04290 0.28 -1.8 900,510 + HGI48_RS04290 0.29 -1.7 900,511 - HGI48_RS04290 0.29 +1.5 900,511 - HGI48_RS04290 0.29 +1.0 900,646 + +0.0 900,647 - HGI48_RS04290 0.40 +2.3 900,666 + HGI48_RS04290 0.41 -0.4 900,666 + HGI48_RS04290 0.41 +1.4 900,666 + HGI48_RS04290 0.41 +0.4 900,666 + HGI48_RS04290 0.41 +0.6 900,666 + HGI48_RS04290 0.41 -2.7 900,666 + HGI48_RS04290 0.41 -0.3 900,666 + HGI48_RS04290 0.41 +1.3 900,666 + HGI48_RS04290 0.41 -1.3 900,666 + HGI48_RS04290 0.41 -1.8 900,666 + +2.0 900,666 + HGI48_RS04290 0.41 -1.0 900,666 + HGI48_RS04290 0.41 -1.0 900,667 - HGI48_RS04290 0.42 +1.9 900,667 - HGI48_RS04290 0.42 -1.3 900,667 - HGI48_RS04290 0.42 +1.9 900,667 - HGI48_RS04290 0.42 +1.6 900,667 - +2.8 900,667 - HGI48_RS04290 0.42 +1.3 900,667 - HGI48_RS04290 0.42 +1.0 900,667 - HGI48_RS04290 0.42 +2.2 900,682 + HGI48_RS04290 0.43 +0.2 900,683 - HGI48_RS04290 0.43 +0.4 900,683 - HGI48_RS04290 0.43 -0.8 900,683 - HGI48_RS04290 0.43 +0.4 900,683 - HGI48_RS04290 0.43 +2.0 900,685 - HGI48_RS04290 0.43 +0.0 900,718 + HGI48_RS04290 0.46 -1.6 900,718 + +2.3 900,719 - HGI48_RS04290 0.46 -1.3 900,805 - HGI48_RS04290 0.53 -1.0 900,805 - HGI48_RS04290 0.53 +0.4 900,805 - HGI48_RS04290 0.53 +0.8 900,854 - HGI48_RS04290 0.57 -1.3 900,919 - HGI48_RS04290 0.62 +0.9 900,933 + +2.0 900,933 + HGI48_RS04290 0.63 +2.2 900,955 - -0.6 900,988 - HGI48_RS04290 0.68 -1.8 900,993 + -0.6 901,010 - HGI48_RS04290 0.70 +0.8
Or see this region's nucleotide sequence