Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03795 and HGI48_RS03800 are separated by 126 nucleotides HGI48_RS03800 and HGI48_RS03805 are separated by 11 nucleotides HGI48_RS03805 and HGI48_RS03810 are separated by 0 nucleotides
HGI48_RS03795: HGI48_RS03795 - 4Fe-4S binding protein, at 810,049 to 810,918
_RS03795
HGI48_RS03800: HGI48_RS03800 - dimethyl sulfoxide reductase anchor subunit, at 811,045 to 811,875
_RS03800
HGI48_RS03805: HGI48_RS03805 - dimethylsulfoxide reductase subunit B, at 811,887 to 812,435
_RS03805
HGI48_RS03810: HGI48_RS03810 - molybdopterin-dependent oxidoreductase, at 812,436 to 815,018
_RS03810
Position (kb) 811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 810.050 kb on + strand at 810.050 kb on + strand at 810.051 kb on - strand at 810.125 kb on - strand at 810.156 kb on - strand, within HGI48_RS03795 at 810.173 kb on - strand, within HGI48_RS03795 at 810.369 kb on + strand at 810.369 kb on + strand, within HGI48_RS03795 at 810.370 kb on - strand, within HGI48_RS03795 at 810.651 kb on + strand, within HGI48_RS03795 at 810.745 kb on - strand, within HGI48_RS03795 at 810.835 kb on + strand at 810.964 kb on - strand at 811.009 kb on - strand at 811.160 kb on - strand, within HGI48_RS03800 at 811.234 kb on + strand, within HGI48_RS03800 at 811.289 kb on + strand, within HGI48_RS03800 at 811.289 kb on + strand at 811.601 kb on - strand, within HGI48_RS03800 at 811.628 kb on - strand, within HGI48_RS03800 at 811.663 kb on + strand, within HGI48_RS03800 at 811.663 kb on + strand, within HGI48_RS03800 at 811.841 kb on - strand at 812.055 kb on + strand, within HGI48_RS03805 at 812.056 kb on - strand, within HGI48_RS03805 at 812.094 kb on - strand, within HGI48_RS03805 at 812.141 kb on - strand, within HGI48_RS03805 at 812.144 kb on + strand, within HGI48_RS03805 at 812.144 kb on + strand, within HGI48_RS03805 at 812.175 kb on + strand, within HGI48_RS03805 at 812.175 kb on + strand, within HGI48_RS03805 at 812.176 kb on - strand, within HGI48_RS03805 at 812.265 kb on + strand, within HGI48_RS03805 at 812.266 kb on - strand, within HGI48_RS03805 at 812.327 kb on + strand at 812.352 kb on - strand, within HGI48_RS03805 at 812.397 kb on + strand at 812.403 kb on - strand at 812.473 kb on - strand at 812.546 kb on + strand at 812.546 kb on + strand at 812.547 kb on - strand at 812.547 kb on - strand at 812.620 kb on - strand at 812.675 kb on + strand at 812.742 kb on - strand at 812.754 kb on - strand, within HGI48_RS03810
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 810,050 + -1.5 810,050 + -0.4 810,051 - -1.7 810,125 - +0.1 810,156 - HGI48_RS03795 0.12 -0.9 810,173 - HGI48_RS03795 0.14 -1.9 810,369 + +2.6 810,369 + HGI48_RS03795 0.37 +0.7 810,370 - HGI48_RS03795 0.37 +1.2 810,651 + HGI48_RS03795 0.69 -1.3 810,745 - HGI48_RS03795 0.80 +0.3 810,835 + -1.3 810,964 - -1.3 811,009 - -1.9 811,160 - HGI48_RS03800 0.14 +0.0 811,234 + HGI48_RS03800 0.23 +2.6 811,289 + HGI48_RS03800 0.29 -1.5 811,289 + -0.5 811,601 - HGI48_RS03800 0.67 -1.9 811,628 - HGI48_RS03800 0.70 -1.3 811,663 + HGI48_RS03800 0.74 +0.7 811,663 + HGI48_RS03800 0.74 +1.0 811,841 - -1.5 812,055 + HGI48_RS03805 0.31 -0.9 812,056 - HGI48_RS03805 0.31 -0.9 812,094 - HGI48_RS03805 0.38 -1.7 812,141 - HGI48_RS03805 0.46 +0.8 812,144 + HGI48_RS03805 0.47 +0.4 812,144 + HGI48_RS03805 0.47 +1.4 812,175 + HGI48_RS03805 0.52 +0.4 812,175 + HGI48_RS03805 0.52 -1.3 812,176 - HGI48_RS03805 0.53 -0.9 812,265 + HGI48_RS03805 0.69 -1.5 812,266 - HGI48_RS03805 0.69 -2.5 812,327 + +2.1 812,352 - HGI48_RS03805 0.85 -0.9 812,397 + -3.0 812,403 - -3.0 812,473 - -1.7 812,546 + +1.5 812,546 + +0.5 812,547 - -0.1 812,547 - -0.5 812,620 - -1.5 812,675 + -2.4 812,742 - +1.8 812,754 - HGI48_RS03810 0.12 +0.3
Or see this region's nucleotide sequence