Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02470 and HGI48_RS02475 are separated by 230 nucleotides HGI48_RS02475 and HGI48_RS02480 overlap by 16 nucleotides HGI48_RS02480 and HGI48_RS02485 overlap by 4 nucleotides HGI48_RS02485 and HGI48_RS02490 are separated by 302 nucleotides
HGI48_RS02470: HGI48_RS02470 - DUF1868 domain-containing protein, at 534,742 to 535,572
_RS02470
HGI48_RS02475: HGI48_RS02475 - acetyltransferase, at 535,803 to 536,483
_RS02475
HGI48_RS02480: HGI48_RS02480 - hydroxyisourate hydrolase, at 536,468 to 536,800
_RS02480
HGI48_RS02485: HGI48_RS02485 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 536,797 to 537,297
_RS02485
HGI48_RS02490: HGI48_RS02490 - LysR family transcriptional regulator, at 537,600 to 538,538
_RS02490
Position (kb) 536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 535.518 kb on + strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.523 kb on + strand at 535.523 kb on + strand at 535.562 kb on - strand at 535.590 kb on + strand at 535.590 kb on + strand at 535.590 kb on + strand at 535.591 kb on - strand at 535.591 kb on - strand at 535.591 kb on - strand at 535.597 kb on + strand at 535.597 kb on + strand at 535.598 kb on - strand at 535.598 kb on - strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.608 kb on + strand at 535.608 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.618 kb on - strand at 535.618 kb on - strand at 535.618 kb on - strand at 535.625 kb on - strand at 535.625 kb on - strand at 535.625 kb on - strand at 535.625 kb on - strand at 535.629 kb on - strand at 535.641 kb on + strand at 535.642 kb on - strand at 535.646 kb on + strand at 535.667 kb on + strand at 535.692 kb on + strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.703 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.802 kb on + strand at 535.802 kb on + strand at 535.861 kb on + strand at 535.861 kb on + strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.874 kb on + strand, within HGI48_RS02475 at 535.910 kb on + strand, within HGI48_RS02475 at 535.910 kb on + strand, within HGI48_RS02475 at 535.911 kb on - strand, within HGI48_RS02475 at 535.911 kb on - strand, within HGI48_RS02475 at 535.941 kb on + strand, within HGI48_RS02475 at 535.941 kb on + strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 536.085 kb on + strand, within HGI48_RS02475 at 536.085 kb on + strand, within HGI48_RS02475 at 536.086 kb on - strand, within HGI48_RS02475 at 536.430 kb on + strand at 536.430 kb on + strand at 536.430 kb on + strand at 536.431 kb on - strand at 536.486 kb on - strand at 536.486 kb on - strand at 536.523 kb on + strand, within HGI48_RS02480 at 536.523 kb on + strand, within HGI48_RS02480 at 536.524 kb on - strand at 536.568 kb on + strand, within HGI48_RS02480 at 536.568 kb on + strand, within HGI48_RS02480 at 536.569 kb on - strand, within HGI48_RS02480 at 536.569 kb on - strand, within HGI48_RS02480 at 536.788 kb on + strand at 536.789 kb on - strand at 536.789 kb on - strand at 536.794 kb on + strand at 536.795 kb on - strand at 536.795 kb on - strand at 536.832 kb on + strand at 537.012 kb on + strand, within HGI48_RS02485 at 537.152 kb on - strand, within HGI48_RS02485 at 537.276 kb on + strand at 537.277 kb on - strand at 537.286 kb on + strand at 537.286 kb on + strand at 537.286 kb on + strand at 537.287 kb on - strand at 537.287 kb on - strand at 537.287 kb on - strand at 537.287 kb on - strand at 537.329 kb on + strand at 537.329 kb on + strand at 537.329 kb on + strand at 537.330 kb on - strand at 537.364 kb on + strand at 537.389 kb on + strand at 537.401 kb on + strand at 537.404 kb on - strand at 537.433 kb on - strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.482 kb on - strand at 537.482 kb on - strand at 537.517 kb on + strand at 537.535 kb on + strand at 537.564 kb on + strand at 537.678 kb on + strand at 537.678 kb on + strand at 537.794 kb on + strand, within HGI48_RS02490 at 537.794 kb on + strand, within HGI48_RS02490 at 537.796 kb on + strand, within HGI48_RS02490
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 535,518 + +0.5 535,518 + -0.4 535,518 + -0.7 535,518 + +2.4 535,519 - +1.2 535,519 - +2.4 535,519 - +0.7 535,523 + -1.3 535,523 + -1.7 535,562 - -1.7 535,590 + -1.8 535,590 + +0.0 535,590 + +0.1 535,591 - -1.2 535,591 - +3.0 535,591 - +1.7 535,597 + +1.0 535,597 + +4.2 535,598 - +1.0 535,598 - +0.6 535,600 + +0.6 535,600 + +0.3 535,600 + -1.7 535,600 + -1.7 535,600 + +0.2 535,600 + -1.4 535,600 + -2.0 535,600 + +1.8 535,601 - -1.4 535,601 - +0.5 535,601 - +1.2 535,601 - +2.3 535,601 - -0.8 535,608 + +0.9 535,608 + +1.7 535,617 + +1.2 535,617 + -2.7 535,617 + -2.3 535,617 + -0.4 535,617 + +2.3 535,618 - -1.4 535,618 - +2.0 535,618 - +0.0 535,625 - +1.4 535,625 - -0.4 535,625 - +0.9 535,625 - -3.1 535,629 - -2.4 535,641 + +1.7 535,642 - +2.4 535,646 + +0.4 535,667 + -1.8 535,692 + -1.2 535,693 - -1.4 535,693 - +1.2 535,693 - -2.8 535,693 - -1.7 535,693 - +0.3 535,703 + +0.6 535,758 + -2.0 535,758 + +1.4 535,758 + -2.0 535,759 - +0.2 535,759 - -2.7 535,759 - +1.0 535,759 - +0.4 535,802 + -1.2 535,802 + +1.9 535,861 + +1.7 535,861 + -0.4 535,862 - +0.3 535,862 - +0.7 535,862 - -0.8 535,862 - -0.4 535,862 - +0.2 535,862 - +1.3 535,862 - -2.0 535,874 + HGI48_RS02475 0.10 +2.2 535,910 + HGI48_RS02475 0.16 -1.7 535,910 + HGI48_RS02475 0.16 -2.0 535,911 - HGI48_RS02475 0.16 -2.3 535,911 - HGI48_RS02475 0.16 -1.8 535,941 + HGI48_RS02475 0.20 +0.6 535,941 + HGI48_RS02475 0.20 -1.4 535,942 - HGI48_RS02475 0.20 -1.2 535,942 - HGI48_RS02475 0.20 -1.2 535,942 - HGI48_RS02475 0.20 -1.7 535,942 - HGI48_RS02475 0.20 -2.2 535,942 - HGI48_RS02475 0.20 +2.7 535,947 + HGI48_RS02475 0.21 -2.7 535,947 + HGI48_RS02475 0.21 -3.3 535,947 + HGI48_RS02475 0.21 +1.6 535,947 + +1.2 535,947 + HGI48_RS02475 0.21 +1.2 535,947 + HGI48_RS02475 0.21 -1.2 535,947 + HGI48_RS02475 0.21 -1.7 535,947 + HGI48_RS02475 0.21 +0.6 535,947 + HGI48_RS02475 0.21 +0.2 535,947 + HGI48_RS02475 0.21 -1.4 535,948 - HGI48_RS02475 0.21 +1.4 535,948 - HGI48_RS02475 0.21 -2.7 535,948 - HGI48_RS02475 0.21 +0.9 535,948 - HGI48_RS02475 0.21 -0.8 535,948 - HGI48_RS02475 0.21 +0.2 535,948 - HGI48_RS02475 0.21 +2.1 536,085 + HGI48_RS02475 0.41 +2.0 536,085 + HGI48_RS02475 0.41 -0.8 536,086 - HGI48_RS02475 0.42 +1.2 536,430 + -2.0 536,430 + -1.7 536,430 + +0.6 536,431 - -1.2 536,486 - -0.8 536,486 - -2.0 536,523 + HGI48_RS02480 0.17 -1.4 536,523 + HGI48_RS02480 0.17 +0.3 536,524 - -0.4 536,568 + HGI48_RS02480 0.30 -0.8 536,568 + HGI48_RS02480 0.30 -1.4 536,569 - HGI48_RS02480 0.30 -0.1 536,569 - HGI48_RS02480 0.30 -1.2 536,788 + +0.7 536,789 - +2.4 536,789 - +0.4 536,794 + +0.9 536,795 - +0.6 536,795 - -2.2 536,832 + -0.3 537,012 + HGI48_RS02485 0.43 -1.4 537,152 - HGI48_RS02485 0.71 +3.2 537,276 + -0.8 537,277 - +0.8 537,286 + +0.2 537,286 + +1.2 537,286 + -2.0 537,287 - -0.8 537,287 - -0.8 537,287 - -1.7 537,287 - +2.0 537,329 + -1.8 537,329 + -2.0 537,329 + -2.2 537,330 - +1.5 537,364 + -0.4 537,389 + +0.3 537,401 + -1.2 537,404 - -1.2 537,433 - +2.3 537,444 + -2.8 537,444 + -1.2 537,444 + -0.7 537,444 + -1.2 537,444 + +1.4 537,444 + -1.5 537,445 - +0.2 537,445 - +1.3 537,445 - -0.3 537,445 - +1.6 537,445 - -0.8 537,445 - -0.8 537,445 - +0.1 537,482 - +0.4 537,482 - -2.5 537,517 + +2.0 537,535 + +0.7 537,564 + +0.3 537,678 + +2.3 537,678 + -2.5 537,794 + HGI48_RS02490 0.21 -1.4 537,794 + HGI48_RS02490 0.21 -1.2 537,796 + HGI48_RS02490 0.21 +0.5
Or see this region's nucleotide sequence