Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01590

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01585 and HGI48_RS01590 are separated by 145 nucleotidesHGI48_RS01590 and HGI48_RS01595 are separated by 10 nucleotidesHGI48_RS01595 and HGI48_RS01600 are separated by 37 nucleotidesHGI48_RS01600 and HGI48_RS01605 overlap by 4 nucleotides HGI48_RS01585: HGI48_RS01585 - alginate lyase family protein, at 350,709 to 352,010 _RS01585 HGI48_RS01590: HGI48_RS01590 - divisome-associated lipoprotein YraP, at 352,156 to 352,731 _RS01590 HGI48_RS01595: HGI48_RS01595 - DnaA initiator-associating protein DiaA, at 352,742 to 353,332 _RS01595 HGI48_RS01600: HGI48_RS01600 - YraN family protein, at 353,370 to 353,726 _RS01600 HGI48_RS01605: HGI48_RS01605 - penicillin-binding protein activator, at 353,723 to 355,756 _RS01605 Position (kb) 352 353Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.186 kb on - strandat 351.210 kb on - strandat 351.210 kb on - strand, within HGI48_RS01585at 351.227 kb on + strand, within HGI48_RS01585at 351.227 kb on + strand, within HGI48_RS01585at 351.227 kb on + strandat 351.227 kb on + strand, within HGI48_RS01585at 351.227 kb on + strand, within HGI48_RS01585at 351.246 kb on + strand, within HGI48_RS01585at 351.247 kb on - strand, within HGI48_RS01585at 351.405 kb on + strand, within HGI48_RS01585at 351.405 kb on + strand, within HGI48_RS01585at 351.405 kb on + strand, within HGI48_RS01585at 351.406 kb on - strand, within HGI48_RS01585at 351.406 kb on - strand, within HGI48_RS01585at 351.406 kb on - strand, within HGI48_RS01585at 351.461 kb on + strand, within HGI48_RS01585at 351.461 kb on + strand, within HGI48_RS01585at 351.461 kb on + strand, within HGI48_RS01585at 351.462 kb on - strand, within HGI48_RS01585at 351.462 kb on - strand, within HGI48_RS01585at 351.462 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.508 kb on - strand, within HGI48_RS01585at 351.628 kb on - strand, within HGI48_RS01585at 351.628 kb on - strand, within HGI48_RS01585at 351.681 kb on + strand, within HGI48_RS01585at 351.682 kb on - strand, within HGI48_RS01585at 351.756 kb on + strand, within HGI48_RS01585at 351.757 kb on - strand, within HGI48_RS01585at 351.785 kb on + strandat 351.785 kb on + strandat 351.786 kb on - strand, within HGI48_RS01585at 351.786 kb on - strand, within HGI48_RS01585at 351.791 kb on + strand, within HGI48_RS01585at 351.792 kb on - strand, within HGI48_RS01585at 351.792 kb on - strand, within HGI48_RS01585at 351.792 kb on - strand, within HGI48_RS01585at 352.045 kb on - strandat 352.157 kb on + strandat 352.157 kb on + strandat 352.167 kb on - strandat 352.363 kb on - strand, within HGI48_RS01590at 352.409 kb on + strandat 352.410 kb on - strand, within HGI48_RS01590at 352.437 kb on + strand, within HGI48_RS01590at 352.540 kb on + strand, within HGI48_RS01590at 352.703 kb on - strandat 352.722 kb on - strandat 352.807 kb on + strand, within HGI48_RS01595at 352.808 kb on - strand, within HGI48_RS01595at 352.808 kb on - strand, within HGI48_RS01595at 352.808 kb on - strandat 353.037 kb on + strand, within HGI48_RS01595at 353.037 kb on + strand, within HGI48_RS01595at 353.095 kb on + strand, within HGI48_RS01595at 353.096 kb on - strand, within HGI48_RS01595at 353.182 kb on + strand, within HGI48_RS01595at 353.182 kb on + strand, within HGI48_RS01595at 353.254 kb on + strand, within HGI48_RS01595at 353.255 kb on - strand, within HGI48_RS01595at 353.317 kb on + strandat 353.317 kb on + strandat 353.430 kb on + strand, within HGI48_RS01600at 353.431 kb on - strand, within HGI48_RS01600at 353.526 kb on - strand, within HGI48_RS01600at 353.528 kb on + strand, within HGI48_RS01600at 353.529 kb on - strand, within HGI48_RS01600at 353.529 kb on - strand, within HGI48_RS01600at 353.606 kb on + strand, within HGI48_RS01600at 353.607 kb on - strand, within HGI48_RS01600

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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351,185 + HGI48_RS01585 0.37 -1.1
351,185 + HGI48_RS01585 0.37 -1.1
351,185 + HGI48_RS01585 0.37 -2.6
351,185 + HGI48_RS01585 0.37 +0.4
351,185 + HGI48_RS01585 0.37 -0.8
351,185 + HGI48_RS01585 0.37 -1.1
351,185 + HGI48_RS01585 0.37 -1.8
351,185 + HGI48_RS01585 0.37 +1.8
351,186 - +0.2
351,210 - -0.3
351,210 - HGI48_RS01585 0.38 -0.5
351,227 + HGI48_RS01585 0.40 -1.3
351,227 + HGI48_RS01585 0.40 +0.5
351,227 + +0.2
351,227 + HGI48_RS01585 0.40 +0.5
351,227 + HGI48_RS01585 0.40 +0.4
351,246 + HGI48_RS01585 0.41 -0.8
351,247 - HGI48_RS01585 0.41 -2.5
351,405 + HGI48_RS01585 0.53 +2.1
351,405 + HGI48_RS01585 0.53 +0.0
351,405 + HGI48_RS01585 0.53 -2.6
351,406 - HGI48_RS01585 0.54 -1.6
351,406 - HGI48_RS01585 0.54 -0.5
351,406 - HGI48_RS01585 0.54 -0.8
351,461 + HGI48_RS01585 0.58 -1.6
351,461 + HGI48_RS01585 0.58 +2.2
351,461 + HGI48_RS01585 0.58 +1.8
351,462 - HGI48_RS01585 0.58 +0.6
351,462 - HGI48_RS01585 0.58 -0.8
351,462 - HGI48_RS01585 0.58 +1.2
351,478 - HGI48_RS01585 0.59 +1.6
351,478 - HGI48_RS01585 0.59 +1.4
351,478 - HGI48_RS01585 0.59 -0.8
351,478 - HGI48_RS01585 0.59 +2.0
351,478 - HGI48_RS01585 0.59 -1.1
351,479 + HGI48_RS01585 0.59 +0.8
351,479 + HGI48_RS01585 0.59 -1.1
351,479 + HGI48_RS01585 0.59 +1.6
351,479 + HGI48_RS01585 0.59 +0.8
351,479 + HGI48_RS01585 0.59 +0.4
351,479 + HGI48_RS01585 0.59 -0.0
351,480 - HGI48_RS01585 0.59 -1.0
351,480 - HGI48_RS01585 0.59 +0.8
351,480 - HGI48_RS01585 0.59 -1.1
351,480 - HGI48_RS01585 0.59 -2.3
351,480 - HGI48_RS01585 0.59 +1.2
351,480 - HGI48_RS01585 0.59 -1.1
351,480 - HGI48_RS01585 0.59 -1.9
351,480 - HGI48_RS01585 0.59 +1.0
351,480 - HGI48_RS01585 0.59 -1.6
351,508 - HGI48_RS01585 0.61 -2.1
351,628 - HGI48_RS01585 0.71 +1.6
351,628 - HGI48_RS01585 0.71 -0.3
351,681 + HGI48_RS01585 0.75 +1.9
351,682 - HGI48_RS01585 0.75 -0.1
351,756 + HGI48_RS01585 0.80 +2.1
351,757 - HGI48_RS01585 0.80 -2.3
351,785 + +0.2
351,785 + +1.2
351,786 - HGI48_RS01585 0.83 +0.1
351,786 - HGI48_RS01585 0.83 -2.3
351,791 + HGI48_RS01585 0.83 +1.0
351,792 - HGI48_RS01585 0.83 -1.1
351,792 - HGI48_RS01585 0.83 -1.1
351,792 - HGI48_RS01585 0.83 -0.8
352,045 - -1.3
352,157 + +1.4
352,157 + -1.1
352,167 - +0.2
352,363 - HGI48_RS01590 0.36 -2.8
352,409 + -0.3
352,410 - HGI48_RS01590 0.44 +0.6
352,437 + HGI48_RS01590 0.49 -1.3
352,540 + HGI48_RS01590 0.67 +2.2
352,703 - -0.3
352,722 - +2.0
352,807 + HGI48_RS01595 0.11 +2.4
352,808 - HGI48_RS01595 0.11 +1.2
352,808 - HGI48_RS01595 0.11 +1.2
352,808 - +2.2
353,037 + HGI48_RS01595 0.50 -0.8
353,037 + HGI48_RS01595 0.50 +1.9
353,095 + HGI48_RS01595 0.60 +1.8
353,096 - HGI48_RS01595 0.60 +0.6
353,182 + HGI48_RS01595 0.74 -1.1
353,182 + HGI48_RS01595 0.74 -1.3
353,254 + HGI48_RS01595 0.87 +1.6
353,255 - HGI48_RS01595 0.87 +0.9
353,317 + +0.9
353,317 + +0.8
353,430 + HGI48_RS01600 0.17 +1.9
353,431 - HGI48_RS01600 0.17 -1.1
353,526 - HGI48_RS01600 0.44 -1.8
353,528 + HGI48_RS01600 0.44 +1.5
353,529 - HGI48_RS01600 0.45 -1.3
353,529 - HGI48_RS01600 0.45 +0.6
353,606 + HGI48_RS01600 0.66 +0.3
353,607 - HGI48_RS01600 0.66 -1.9

Or see this region's nucleotide sequence