Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01585

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01575 and HGI48_RS01580 overlap by 4 nucleotidesHGI48_RS01580 and HGI48_RS01585 are separated by 93 nucleotidesHGI48_RS01585 and HGI48_RS01590 are separated by 145 nucleotidesHGI48_RS01590 and HGI48_RS01595 are separated by 10 nucleotides HGI48_RS01575: HGI48_RS01575 - isoprenoid biosynthesis glyoxalase ElbB, at 349,216 to 349,869 _RS01575 HGI48_RS01580: HGI48_RS01580 - monofunctional biosynthetic peptidoglycan transglycosylase, at 349,866 to 350,615 _RS01580 HGI48_RS01585: HGI48_RS01585 - alginate lyase family protein, at 350,709 to 352,010 _RS01585 HGI48_RS01590: HGI48_RS01590 - divisome-associated lipoprotein YraP, at 352,156 to 352,731 _RS01590 HGI48_RS01595: HGI48_RS01595 - DnaA initiator-associating protein DiaA, at 352,742 to 353,332 _RS01595 Position (kb) 350 351 352 353Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 349.721 kb on + strandat 349.721 kb on + strand, within HGI48_RS01575at 349.721 kb on + strand, within HGI48_RS01575at 349.722 kb on - strand, within HGI48_RS01575at 349.739 kb on + strandat 349.740 kb on - strand, within HGI48_RS01575at 349.789 kb on + strand, within HGI48_RS01575at 349.789 kb on + strand, within HGI48_RS01575at 349.789 kb on + strand, within HGI48_RS01575at 349.789 kb on + strand, within HGI48_RS01575at 349.789 kb on + strand, within HGI48_RS01575at 349.789 kb on + strand, within HGI48_RS01575at 349.790 kb on - strand, within HGI48_RS01575at 350.047 kb on + strand, within HGI48_RS01580at 350.047 kb on + strand, within HGI48_RS01580at 350.048 kb on - strand, within HGI48_RS01580at 350.048 kb on - strand, within HGI48_RS01580at 350.064 kb on + strand, within HGI48_RS01580at 350.064 kb on + strand, within HGI48_RS01580at 350.064 kb on + strand, within HGI48_RS01580at 350.064 kb on + strand, within HGI48_RS01580at 350.064 kb on + strand, within HGI48_RS01580at 350.064 kb on + strand, within HGI48_RS01580at 350.065 kb on - strand, within HGI48_RS01580at 350.065 kb on - strand, within HGI48_RS01580at 350.065 kb on - strand, within HGI48_RS01580at 350.065 kb on - strand, within HGI48_RS01580at 350.065 kb on - strand, within HGI48_RS01580at 350.065 kb on - strand, within HGI48_RS01580at 350.195 kb on + strand, within HGI48_RS01580at 350.195 kb on + strand, within HGI48_RS01580at 350.196 kb on - strand, within HGI48_RS01580at 350.196 kb on - strandat 350.201 kb on + strand, within HGI48_RS01580at 350.201 kb on + strand, within HGI48_RS01580at 350.202 kb on - strand, within HGI48_RS01580at 350.202 kb on - strand, within HGI48_RS01580at 350.355 kb on - strand, within HGI48_RS01580at 350.375 kb on + strandat 350.376 kb on - strand, within HGI48_RS01580at 350.407 kb on + strand, within HGI48_RS01580at 350.407 kb on + strand, within HGI48_RS01580at 350.407 kb on + strand, within HGI48_RS01580at 350.408 kb on - strand, within HGI48_RS01580at 350.408 kb on - strand, within HGI48_RS01580at 350.408 kb on - strand, within HGI48_RS01580at 350.435 kb on + strandat 350.436 kb on - strand, within HGI48_RS01580at 350.436 kb on - strand, within HGI48_RS01580at 350.499 kb on - strand, within HGI48_RS01580at 350.529 kb on + strand, within HGI48_RS01580at 350.530 kb on - strandat 350.610 kb on + strandat 350.633 kb on + strandat 350.634 kb on - strandat 350.634 kb on - strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.802 kb on + strandat 350.802 kb on + strandat 350.802 kb on + strandat 350.802 kb on + strandat 350.803 kb on - strandat 350.803 kb on - strandat 350.806 kb on + strandat 350.806 kb on + strandat 350.806 kb on + strandat 350.806 kb on + strandat 350.806 kb on + strandat 350.812 kb on + strandat 350.837 kb on - strandat 350.913 kb on - strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.916 kb on - strand, within HGI48_RS01585at 350.916 kb on - strand, within HGI48_RS01585at 350.916 kb on - strand, within HGI48_RS01585at 350.916 kb on - strand, within HGI48_RS01585at 350.916 kb on - strand, within HGI48_RS01585at 350.936 kb on - strand, within HGI48_RS01585at 350.936 kb on - strandat 350.936 kb on - strand, within HGI48_RS01585at 351.003 kb on + strand, within HGI48_RS01585at 351.003 kb on + strandat 351.117 kb on - strandat 351.127 kb on + strand, within HGI48_RS01585at 351.127 kb on + strand, within HGI48_RS01585at 351.150 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.186 kb on - strandat 351.210 kb on - strandat 351.210 kb on - strand, within HGI48_RS01585at 351.227 kb on + strand, within HGI48_RS01585at 351.227 kb on + strand, within HGI48_RS01585at 351.227 kb on + strandat 351.227 kb on + strand, within HGI48_RS01585at 351.227 kb on + strand, within HGI48_RS01585at 351.246 kb on + strand, within HGI48_RS01585at 351.247 kb on - strand, within HGI48_RS01585at 351.405 kb on + strand, within HGI48_RS01585at 351.405 kb on + strand, within HGI48_RS01585at 351.405 kb on + strand, within HGI48_RS01585at 351.406 kb on - strand, within HGI48_RS01585at 351.406 kb on - strand, within HGI48_RS01585at 351.406 kb on - strand, within HGI48_RS01585at 351.461 kb on + strand, within HGI48_RS01585at 351.461 kb on + strand, within HGI48_RS01585at 351.461 kb on + strand, within HGI48_RS01585at 351.462 kb on - strand, within HGI48_RS01585at 351.462 kb on - strand, within HGI48_RS01585at 351.462 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.508 kb on - strand, within HGI48_RS01585at 351.628 kb on - strand, within HGI48_RS01585at 351.628 kb on - strand, within HGI48_RS01585at 351.681 kb on + strand, within HGI48_RS01585at 351.682 kb on - strand, within HGI48_RS01585at 351.756 kb on + strand, within HGI48_RS01585at 351.757 kb on - strand, within HGI48_RS01585at 351.785 kb on + strandat 351.785 kb on + strandat 351.786 kb on - strand, within HGI48_RS01585at 351.786 kb on - strand, within HGI48_RS01585at 351.791 kb on + strand, within HGI48_RS01585at 351.792 kb on - strand, within HGI48_RS01585at 351.792 kb on - strand, within HGI48_RS01585at 351.792 kb on - strand, within HGI48_RS01585at 352.045 kb on - strandat 352.157 kb on + strandat 352.157 kb on + strandat 352.167 kb on - strandat 352.363 kb on - strand, within HGI48_RS01590at 352.409 kb on + strandat 352.410 kb on - strand, within HGI48_RS01590at 352.437 kb on + strand, within HGI48_RS01590at 352.540 kb on + strand, within HGI48_RS01590at 352.703 kb on - strandat 352.722 kb on - strandat 352.807 kb on + strand, within HGI48_RS01595at 352.808 kb on - strand, within HGI48_RS01595at 352.808 kb on - strand, within HGI48_RS01595at 352.808 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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349,721 + -0.3
349,721 + HGI48_RS01575 0.77 -0.8
349,721 + HGI48_RS01575 0.77 -0.9
349,722 - HGI48_RS01575 0.77 -2.3
349,739 + +0.2
349,740 - HGI48_RS01575 0.80 -3.1
349,789 + HGI48_RS01575 0.88 +0.1
349,789 + HGI48_RS01575 0.88 -2.6
349,789 + HGI48_RS01575 0.88 -0.8
349,789 + HGI48_RS01575 0.88 +1.1
349,789 + HGI48_RS01575 0.88 +1.9
349,789 + HGI48_RS01575 0.88 +0.8
349,790 - HGI48_RS01575 0.88 -0.6
350,047 + HGI48_RS01580 0.24 -1.1
350,047 + HGI48_RS01580 0.24 +0.1
350,048 - HGI48_RS01580 0.24 +2.1
350,048 - HGI48_RS01580 0.24 -0.6
350,064 + HGI48_RS01580 0.26 -1.1
350,064 + HGI48_RS01580 0.26 +1.2
350,064 + HGI48_RS01580 0.26 +0.5
350,064 + HGI48_RS01580 0.26 -1.8
350,064 + HGI48_RS01580 0.26 -2.8
350,064 + HGI48_RS01580 0.26 +0.2
350,065 - HGI48_RS01580 0.27 -2.3
350,065 - HGI48_RS01580 0.27 +0.5
350,065 - HGI48_RS01580 0.27 +0.5
350,065 - HGI48_RS01580 0.27 -0.0
350,065 - HGI48_RS01580 0.27 +0.2
350,065 - HGI48_RS01580 0.27 +2.4
350,195 + HGI48_RS01580 0.44 +2.7
350,195 + HGI48_RS01580 0.44 +1.8
350,196 - HGI48_RS01580 0.44 +2.1
350,196 - -0.3
350,201 + HGI48_RS01580 0.45 -0.7
350,201 + HGI48_RS01580 0.45 -0.8
350,202 - HGI48_RS01580 0.45 -1.6
350,202 - HGI48_RS01580 0.45 +1.0
350,355 - HGI48_RS01580 0.65 +1.2
350,375 + +0.2
350,376 - HGI48_RS01580 0.68 -1.3
350,407 + HGI48_RS01580 0.72 -1.3
350,407 + HGI48_RS01580 0.72 +1.9
350,407 + HGI48_RS01580 0.72 -3.2
350,408 - HGI48_RS01580 0.72 +1.9
350,408 - HGI48_RS01580 0.72 -1.1
350,408 - HGI48_RS01580 0.72 -0.3
350,435 + -0.3
350,436 - HGI48_RS01580 0.76 -1.1
350,436 - HGI48_RS01580 0.76 -1.9
350,499 - HGI48_RS01580 0.84 +1.8
350,529 + HGI48_RS01580 0.88 -4.3
350,530 - -0.3
350,610 + -0.8
350,633 + +0.8
350,634 - -0.3
350,634 - +2.7
350,707 + -3.1
350,707 + +3.1
350,707 + -2.8
350,707 + -2.1
350,707 + -4.1
350,707 + -0.7
350,707 + -1.1
350,707 + -0.8
350,707 + +2.3
350,708 - +0.5
350,708 - +0.0
350,708 - +0.3
350,708 - +0.1
350,708 - +0.6
350,708 - +0.6
350,708 - +0.1
350,708 - +0.3
350,802 + +0.2
350,802 + -1.1
350,802 + +1.2
350,802 + -0.7
350,803 - -0.5
350,803 - +0.5
350,806 + +1.5
350,806 + +1.5
350,806 + -0.2
350,806 + -1.3
350,806 + -0.8
350,812 + -1.9
350,837 - +1.9
350,913 - HGI48_RS01585 0.16 -1.3
350,915 + HGI48_RS01585 0.16 +2.5
350,915 + HGI48_RS01585 0.16 -1.1
350,915 + HGI48_RS01585 0.16 +0.4
350,915 + HGI48_RS01585 0.16 -0.8
350,915 + HGI48_RS01585 0.16 -1.9
350,915 + HGI48_RS01585 0.16 +2.2
350,915 + HGI48_RS01585 0.16 +2.3
350,916 - HGI48_RS01585 0.16 +0.5
350,916 - HGI48_RS01585 0.16 +3.3
350,916 - HGI48_RS01585 0.16 +0.6
350,916 - HGI48_RS01585 0.16 -0.3
350,916 - HGI48_RS01585 0.16 -1.1
350,936 - HGI48_RS01585 0.17 -2.9
350,936 - -0.3
350,936 - HGI48_RS01585 0.17 -0.8
351,003 + HGI48_RS01585 0.23 -1.1
351,003 + +1.2
351,117 - -0.3
351,127 + HGI48_RS01585 0.32 +0.6
351,127 + HGI48_RS01585 0.32 +0.3
351,150 + HGI48_RS01585 0.34 -1.5
351,185 + HGI48_RS01585 0.37 -1.1
351,185 + HGI48_RS01585 0.37 -1.1
351,185 + HGI48_RS01585 0.37 -2.6
351,185 + HGI48_RS01585 0.37 +0.4
351,185 + HGI48_RS01585 0.37 -0.8
351,185 + HGI48_RS01585 0.37 -1.1
351,185 + HGI48_RS01585 0.37 -1.8
351,185 + HGI48_RS01585 0.37 +1.8
351,186 - +0.2
351,210 - -0.3
351,210 - HGI48_RS01585 0.38 -0.5
351,227 + HGI48_RS01585 0.40 -1.3
351,227 + HGI48_RS01585 0.40 +0.5
351,227 + +0.2
351,227 + HGI48_RS01585 0.40 +0.5
351,227 + HGI48_RS01585 0.40 +0.4
351,246 + HGI48_RS01585 0.41 -0.8
351,247 - HGI48_RS01585 0.41 -2.5
351,405 + HGI48_RS01585 0.53 +2.1
351,405 + HGI48_RS01585 0.53 +0.0
351,405 + HGI48_RS01585 0.53 -2.6
351,406 - HGI48_RS01585 0.54 -1.6
351,406 - HGI48_RS01585 0.54 -0.5
351,406 - HGI48_RS01585 0.54 -0.8
351,461 + HGI48_RS01585 0.58 -1.6
351,461 + HGI48_RS01585 0.58 +2.2
351,461 + HGI48_RS01585 0.58 +1.8
351,462 - HGI48_RS01585 0.58 +0.6
351,462 - HGI48_RS01585 0.58 -0.8
351,462 - HGI48_RS01585 0.58 +1.2
351,478 - HGI48_RS01585 0.59 +1.6
351,478 - HGI48_RS01585 0.59 +1.4
351,478 - HGI48_RS01585 0.59 -0.8
351,478 - HGI48_RS01585 0.59 +2.0
351,478 - HGI48_RS01585 0.59 -1.1
351,479 + HGI48_RS01585 0.59 +0.8
351,479 + HGI48_RS01585 0.59 -1.1
351,479 + HGI48_RS01585 0.59 +1.6
351,479 + HGI48_RS01585 0.59 +0.8
351,479 + HGI48_RS01585 0.59 +0.4
351,479 + HGI48_RS01585 0.59 -0.0
351,480 - HGI48_RS01585 0.59 -1.0
351,480 - HGI48_RS01585 0.59 +0.8
351,480 - HGI48_RS01585 0.59 -1.1
351,480 - HGI48_RS01585 0.59 -2.3
351,480 - HGI48_RS01585 0.59 +1.2
351,480 - HGI48_RS01585 0.59 -1.1
351,480 - HGI48_RS01585 0.59 -1.9
351,480 - HGI48_RS01585 0.59 +1.0
351,480 - HGI48_RS01585 0.59 -1.6
351,508 - HGI48_RS01585 0.61 -2.1
351,628 - HGI48_RS01585 0.71 +1.6
351,628 - HGI48_RS01585 0.71 -0.3
351,681 + HGI48_RS01585 0.75 +1.9
351,682 - HGI48_RS01585 0.75 -0.1
351,756 + HGI48_RS01585 0.80 +2.1
351,757 - HGI48_RS01585 0.80 -2.3
351,785 + +0.2
351,785 + +1.2
351,786 - HGI48_RS01585 0.83 +0.1
351,786 - HGI48_RS01585 0.83 -2.3
351,791 + HGI48_RS01585 0.83 +1.0
351,792 - HGI48_RS01585 0.83 -1.1
351,792 - HGI48_RS01585 0.83 -1.1
351,792 - HGI48_RS01585 0.83 -0.8
352,045 - -1.3
352,157 + +1.4
352,157 + -1.1
352,167 - +0.2
352,363 - HGI48_RS01590 0.36 -2.8
352,409 + -0.3
352,410 - HGI48_RS01590 0.44 +0.6
352,437 + HGI48_RS01590 0.49 -1.3
352,540 + HGI48_RS01590 0.67 +2.2
352,703 - -0.3
352,722 - +2.0
352,807 + HGI48_RS01595 0.11 +2.4
352,808 - HGI48_RS01595 0.11 +1.2
352,808 - HGI48_RS01595 0.11 +1.2
352,808 - +2.2

Or see this region's nucleotide sequence