Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00940 and HGI48_RS00945 are separated by 49 nucleotides HGI48_RS00945 and HGI48_RS00950 are separated by 96 nucleotides HGI48_RS00950 and HGI48_RS00955 are separated by 138 nucleotides HGI48_RS00955 and HGI48_RS00960 are separated by 36 nucleotides HGI48_RS00960 and HGI48_RS00965 are separated by 25 nucleotides
HGI48_RS00940: HGI48_RS00940 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 213,463 to 214,950
_RS00940
HGI48_RS00945: HGI48_RS00945 - NAD(P)H-flavin reductase, at 215,000 to 215,701
_RS00945
HGI48_RS00950: HGI48_RS00950 - FAD-dependent oxidoreductase, at 215,798 to 217,489
_RS00950
HGI48_RS00955: HGI48_RS00955 - helix-turn-helix transcriptional regulator, at 217,628 to 217,945
_RS00955
HGI48_RS00960: HGI48_RS00960 - YeeE/YedE family protein, at 217,982 to 218,410
_RS00960
HGI48_RS00965: HGI48_RS00965 - YeeE/YedE family protein, at 218,436 to 218,864
_RS00965
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 214.986 kb on + strand at 215.017 kb on + strand at 215.018 kb on - strand at 215.023 kb on - strand at 215.349 kb on - strand, within HGI48_RS00945 at 215.349 kb on - strand at 215.352 kb on + strand, within HGI48_RS00945 at 215.352 kb on + strand, within HGI48_RS00945 at 215.353 kb on - strand, within HGI48_RS00945 at 215.353 kb on - strand, within HGI48_RS00945 at 215.400 kb on + strand, within HGI48_RS00945 at 215.401 kb on - strand, within HGI48_RS00945 at 215.438 kb on + strand at 215.595 kb on - strand, within HGI48_RS00945 at 215.595 kb on - strand, within HGI48_RS00945 at 215.675 kb on + strand at 215.754 kb on - strand at 215.799 kb on + strand at 215.799 kb on + strand at 215.799 kb on + strand at 215.799 kb on + strand at 215.800 kb on - strand at 215.800 kb on - strand at 215.800 kb on - strand at 215.800 kb on - strand at 215.820 kb on + strand at 215.827 kb on + strand at 215.827 kb on + strand at 215.828 kb on - strand at 215.828 kb on - strand at 215.965 kb on + strand at 215.966 kb on - strand at 216.070 kb on + strand at 216.071 kb on - strand at 216.071 kb on - strand, within HGI48_RS00950 at 216.071 kb on - strand, within HGI48_RS00950 at 216.071 kb on - strand, within HGI48_RS00950 at 216.172 kb on - strand, within HGI48_RS00950 at 216.172 kb on - strand, within HGI48_RS00950 at 216.326 kb on + strand at 216.326 kb on + strand at 216.326 kb on + strand, within HGI48_RS00950 at 216.326 kb on + strand, within HGI48_RS00950 at 216.326 kb on + strand, within HGI48_RS00950 at 216.326 kb on + strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.484 kb on - strand, within HGI48_RS00950 at 216.484 kb on - strand, within HGI48_RS00950 at 216.484 kb on - strand, within HGI48_RS00950 at 216.484 kb on - strand, within HGI48_RS00950 at 216.505 kb on + strand, within HGI48_RS00950 at 216.505 kb on + strand, within HGI48_RS00950 at 216.506 kb on - strand at 216.506 kb on - strand, within HGI48_RS00950 at 216.506 kb on - strand, within HGI48_RS00950 at 216.506 kb on - strand, within HGI48_RS00950 at 216.506 kb on - strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.613 kb on - strand, within HGI48_RS00950 at 216.613 kb on - strand, within HGI48_RS00950 at 216.613 kb on - strand, within HGI48_RS00950 at 216.677 kb on + strand, within HGI48_RS00950 at 216.677 kb on + strand, within HGI48_RS00950 at 216.677 kb on + strand, within HGI48_RS00950 at 216.677 kb on + strand, within HGI48_RS00950 at 216.678 kb on - strand, within HGI48_RS00950 at 216.678 kb on - strand, within HGI48_RS00950 at 216.678 kb on - strand, within HGI48_RS00950 at 216.736 kb on + strand, within HGI48_RS00950 at 216.737 kb on - strand, within HGI48_RS00950 at 216.823 kb on + strand, within HGI48_RS00950 at 216.824 kb on - strand, within HGI48_RS00950 at 216.845 kb on + strand, within HGI48_RS00950 at 216.885 kb on - strand, within HGI48_RS00950 at 216.885 kb on - strand, within HGI48_RS00950 at 217.096 kb on + strand, within HGI48_RS00950 at 217.097 kb on - strand, within HGI48_RS00950 at 217.097 kb on - strand, within HGI48_RS00950 at 217.173 kb on + strand, within HGI48_RS00950 at 217.173 kb on + strand, within HGI48_RS00950 at 217.174 kb on - strand, within HGI48_RS00950 at 217.174 kb on - strand, within HGI48_RS00950 at 217.174 kb on - strand, within HGI48_RS00950 at 217.174 kb on - strand at 217.185 kb on + strand, within HGI48_RS00950 at 217.185 kb on + strand at 217.185 kb on + strand, within HGI48_RS00950 at 217.185 kb on + strand, within HGI48_RS00950 at 217.185 kb on + strand, within HGI48_RS00950 at 217.185 kb on + strand, within HGI48_RS00950 at 217.185 kb on + strand at 217.186 kb on - strand at 217.186 kb on - strand, within HGI48_RS00950 at 217.265 kb on + strand, within HGI48_RS00950 at 217.273 kb on + strand, within HGI48_RS00950 at 217.273 kb on + strand, within HGI48_RS00950 at 217.274 kb on - strand, within HGI48_RS00950 at 217.334 kb on - strand at 217.346 kb on - strand at 217.350 kb on + strand at 217.351 kb on - strand at 217.351 kb on - strand at 217.351 kb on - strand at 217.376 kb on + strand at 217.376 kb on + strand at 217.376 kb on + strand at 217.377 kb on - strand at 217.377 kb on - strand at 217.377 kb on - strand at 217.377 kb on - strand at 217.380 kb on + strand at 217.380 kb on + strand at 217.380 kb on + strand at 217.380 kb on + strand at 217.381 kb on - strand at 217.381 kb on - strand at 217.381 kb on - strand at 217.381 kb on - strand at 217.477 kb on + strand at 217.477 kb on + strand at 217.477 kb on + strand at 217.478 kb on - strand at 217.478 kb on - strand at 217.478 kb on - strand at 217.508 kb on + strand at 217.509 kb on - strand at 217.878 kb on - strand at 217.912 kb on + strand, within HGI48_RS00955 at 217.912 kb on + strand, within HGI48_RS00955 at 217.913 kb on - strand, within HGI48_RS00955 at 217.915 kb on + strand at 217.915 kb on + strand at 217.915 kb on + strand at 217.916 kb on - strand at 217.922 kb on + strand at 217.923 kb on - strand at 217.923 kb on - strand at 217.923 kb on - strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.932 kb on - strand at 217.932 kb on - strand at 217.932 kb on - strand at 217.932 kb on - strand at 217.943 kb on + strand at 217.944 kb on - strand at 217.944 kb on - strand at 217.993 kb on + strand at 217.994 kb on - strand at 217.994 kb on - strand at 218.032 kb on + strand, within HGI48_RS00960 at 218.033 kb on - strand, within HGI48_RS00960 at 218.033 kb on - strand, within HGI48_RS00960 at 218.241 kb on + strand, within HGI48_RS00960 at 218.446 kb on + strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 214,986 + -0.8 215,017 + -2.1 215,018 - +1.2 215,023 - +0.2 215,349 - HGI48_RS00945 0.50 +2.1 215,349 - -0.3 215,352 + HGI48_RS00945 0.50 -1.6 215,352 + HGI48_RS00945 0.50 -2.5 215,353 - HGI48_RS00945 0.50 +0.9 215,353 - HGI48_RS00945 0.50 +1.6 215,400 + HGI48_RS00945 0.57 -0.8 215,401 - HGI48_RS00945 0.57 -1.3 215,438 + -0.3 215,595 - HGI48_RS00945 0.85 -1.6 215,595 - HGI48_RS00945 0.85 +3.0 215,675 + -1.1 215,754 - +1.4 215,799 + +1.8 215,799 + -0.2 215,799 + -1.1 215,799 + -1.6 215,800 - +1.5 215,800 - -1.3 215,800 - +1.5 215,800 - -1.1 215,820 + -2.1 215,827 + +4.0 215,827 + +1.4 215,828 - -1.1 215,828 - -0.3 215,965 + +0.4 215,966 - +1.1 216,070 + -0.3 216,071 - +0.2 216,071 - HGI48_RS00950 0.16 -1.9 216,071 - HGI48_RS00950 0.16 -0.8 216,071 - HGI48_RS00950 0.16 -2.1 216,172 - HGI48_RS00950 0.22 +1.6 216,172 - HGI48_RS00950 0.22 -0.8 216,326 + +2.6 216,326 + -0.3 216,326 + HGI48_RS00950 0.31 -1.6 216,326 + HGI48_RS00950 0.31 -0.4 216,326 + HGI48_RS00950 0.31 -0.2 216,326 + HGI48_RS00950 0.31 +0.8 216,327 - HGI48_RS00950 0.31 -1.9 216,327 - HGI48_RS00950 0.31 -0.8 216,327 - HGI48_RS00950 0.31 +1.2 216,327 - -0.3 216,327 - HGI48_RS00950 0.31 +2.4 216,327 - HGI48_RS00950 0.31 -1.1 216,327 - HGI48_RS00950 0.31 -1.8 216,327 - HGI48_RS00950 0.31 +2.2 216,327 - HGI48_RS00950 0.31 +1.4 216,372 + HGI48_RS00950 0.34 +1.0 216,372 + HGI48_RS00950 0.34 -1.1 216,372 + HGI48_RS00950 0.34 +1.2 216,372 + HGI48_RS00950 0.34 -1.6 216,372 + +0.2 216,372 + HGI48_RS00950 0.34 +0.0 216,372 + HGI48_RS00950 0.34 -1.1 216,372 + HGI48_RS00950 0.34 -2.6 216,372 + HGI48_RS00950 0.34 -2.9 216,372 + HGI48_RS00950 0.34 -0.8 216,372 + HGI48_RS00950 0.34 +0.2 216,372 + HGI48_RS00950 0.34 +0.9 216,372 + HGI48_RS00950 0.34 -1.1 216,372 + HGI48_RS00950 0.34 -1.1 216,372 + HGI48_RS00950 0.34 +0.1 216,372 + HGI48_RS00950 0.34 -1.3 216,373 - HGI48_RS00950 0.34 +2.5 216,373 - HGI48_RS00950 0.34 -0.5 216,373 - HGI48_RS00950 0.34 -0.2 216,373 - HGI48_RS00950 0.34 +2.4 216,373 - HGI48_RS00950 0.34 +1.0 216,373 - HGI48_RS00950 0.34 +0.4 216,373 - HGI48_RS00950 0.34 +2.2 216,373 - HGI48_RS00950 0.34 -2.2 216,373 - HGI48_RS00950 0.34 +0.7 216,484 - HGI48_RS00950 0.41 +0.9 216,484 - HGI48_RS00950 0.41 +0.6 216,484 - HGI48_RS00950 0.41 +0.6 216,484 - HGI48_RS00950 0.41 -1.9 216,505 + HGI48_RS00950 0.42 +0.6 216,505 + HGI48_RS00950 0.42 +0.3 216,506 - -0.3 216,506 - HGI48_RS00950 0.42 -1.8 216,506 - HGI48_RS00950 0.42 -0.9 216,506 - HGI48_RS00950 0.42 +0.0 216,506 - HGI48_RS00950 0.42 -1.3 216,612 + HGI48_RS00950 0.48 +0.5 216,612 + HGI48_RS00950 0.48 -1.6 216,612 + HGI48_RS00950 0.48 -2.7 216,612 + HGI48_RS00950 0.48 +1.9 216,612 + HGI48_RS00950 0.48 +2.1 216,612 + HGI48_RS00950 0.48 +0.8 216,612 + HGI48_RS00950 0.48 +0.7 216,612 + HGI48_RS00950 0.48 +0.1 216,613 - HGI48_RS00950 0.48 -1.6 216,613 - HGI48_RS00950 0.48 +2.0 216,613 - HGI48_RS00950 0.48 -0.8 216,677 + HGI48_RS00950 0.52 +0.0 216,677 + HGI48_RS00950 0.52 -1.3 216,677 + HGI48_RS00950 0.52 -1.6 216,677 + HGI48_RS00950 0.52 +1.4 216,678 - HGI48_RS00950 0.52 -1.1 216,678 - HGI48_RS00950 0.52 -2.1 216,678 - HGI48_RS00950 0.52 -1.6 216,736 + HGI48_RS00950 0.55 -1.3 216,737 - HGI48_RS00950 0.55 +1.5 216,823 + HGI48_RS00950 0.61 +2.9 216,824 - HGI48_RS00950 0.61 +1.6 216,845 + HGI48_RS00950 0.62 -3.3 216,885 - HGI48_RS00950 0.64 -1.9 216,885 - HGI48_RS00950 0.64 -0.8 217,096 + HGI48_RS00950 0.77 +0.3 217,097 - HGI48_RS00950 0.77 +0.2 217,097 - HGI48_RS00950 0.77 -1.9 217,173 + HGI48_RS00950 0.81 -1.8 217,173 + HGI48_RS00950 0.81 -0.6 217,174 - HGI48_RS00950 0.81 -0.5 217,174 - HGI48_RS00950 0.81 +1.2 217,174 - HGI48_RS00950 0.81 -1.3 217,174 - +0.2 217,185 + HGI48_RS00950 0.82 -0.0 217,185 + +1.2 217,185 + HGI48_RS00950 0.82 -0.1 217,185 + HGI48_RS00950 0.82 -1.8 217,185 + HGI48_RS00950 0.82 +0.6 217,185 + HGI48_RS00950 0.82 -1.8 217,185 + +1.2 217,186 - +0.2 217,186 - HGI48_RS00950 0.82 -1.9 217,265 + HGI48_RS00950 0.87 -1.1 217,273 + HGI48_RS00950 0.87 -1.3 217,273 + HGI48_RS00950 0.87 +0.4 217,274 - HGI48_RS00950 0.87 -1.1 217,334 - -1.3 217,346 - -1.6 217,350 + -2.1 217,351 - -2.8 217,351 - -1.1 217,351 - +1.8 217,376 + +2.0 217,376 + +2.2 217,376 + -0.6 217,377 - +1.0 217,377 - -1.1 217,377 - -0.3 217,377 - +1.2 217,380 + -2.2 217,380 + +1.1 217,380 + -1.9 217,380 + +1.6 217,381 - +2.0 217,381 - +2.2 217,381 - +0.7 217,381 - -2.3 217,477 + -1.8 217,477 + +1.2 217,477 + +0.2 217,478 - +2.5 217,478 - +0.3 217,478 - +0.2 217,508 + -0.3 217,509 - +0.6 217,878 - +1.2 217,912 + HGI48_RS00955 0.89 +0.1 217,912 + HGI48_RS00955 0.89 +1.2 217,913 - HGI48_RS00955 0.90 -1.0 217,915 + +2.2 217,915 + +1.7 217,915 + -2.2 217,916 - -1.8 217,922 + +2.2 217,923 - -1.3 217,923 - -1.9 217,923 - +0.2 217,931 + -1.9 217,931 + +0.8 217,931 + -1.9 217,931 + +0.7 217,931 + -0.3 217,931 + -1.6 217,931 + -0.3 217,932 - -2.1 217,932 - +0.9 217,932 - -1.9 217,932 - -1.3 217,943 + -1.0 217,944 - -0.1 217,944 - +0.7 217,993 + -1.8 217,994 - -0.0 217,994 - -2.1 218,032 + HGI48_RS00960 0.12 -1.9 218,033 - HGI48_RS00960 0.12 +1.1 218,033 - HGI48_RS00960 0.12 -2.2 218,241 + HGI48_RS00960 0.60 +0.5 218,446 + -1.0 218,447 - +0.3 218,447 - -0.6 218,447 - -1.6 218,447 - +1.4 218,447 - +1.0 218,447 - +2.2
Or see this region's nucleotide sequence