Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00885

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00875 and HGI48_RS00880 are separated by 24 nucleotidesHGI48_RS00880 and HGI48_RS00885 are separated by 117 nucleotidesHGI48_RS00885 and HGI48_RS00890 are separated by 188 nucleotides HGI48_RS00875: HGI48_RS00875 - N-acetyl-gamma-glutamyl-phosphate reductase, at 200,938 to 201,942 _RS00875 HGI48_RS00880: HGI48_RS00880 - acetylglutamate kinase, at 201,967 to 202,740 _RS00880 HGI48_RS00885: HGI48_RS00885 - argininosuccinate lyase, at 202,858 to 204,231 _RS00885 HGI48_RS00890: HGI48_RS00890 - DNA recombination protein RmuC, at 204,420 to 205,952 _RS00890 Position (kb) 202 203 204 205Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 201.859 kb on - strandat 201.859 kb on - strandat 201.859 kb on - strandat 201.935 kb on + strandat 201.935 kb on + strandat 201.935 kb on + strandat 201.936 kb on - strandat 201.981 kb on + strandat 201.981 kb on + strandat 201.981 kb on + strandat 201.982 kb on - strandat 201.990 kb on - strandat 201.998 kb on + strandat 202.051 kb on + strand, within HGI48_RS00880at 202.052 kb on - strand, within HGI48_RS00880at 202.413 kb on + strand, within HGI48_RS00880at 202.413 kb on + strand, within HGI48_RS00880at 202.590 kb on + strand, within HGI48_RS00880at 202.590 kb on + strand, within HGI48_RS00880at 202.590 kb on + strand, within HGI48_RS00880at 202.590 kb on + strand, within HGI48_RS00880at 202.590 kb on + strand, within HGI48_RS00880at 202.591 kb on - strand, within HGI48_RS00880at 202.591 kb on - strand, within HGI48_RS00880at 202.591 kb on - strand, within HGI48_RS00880at 202.853 kb on + strandat 202.853 kb on + strandat 202.853 kb on + strandat 202.853 kb on + strandat 202.853 kb on + strandat 202.853 kb on + strandat 202.853 kb on + strandat 202.854 kb on - strandat 202.854 kb on - strandat 202.854 kb on - strandat 202.854 kb on - strandat 202.857 kb on + strandat 202.857 kb on + strandat 202.857 kb on + strandat 202.858 kb on - strandat 202.858 kb on - strandat 202.905 kb on + strandat 203.003 kb on + strand, within HGI48_RS00885at 203.003 kb on + strand, within HGI48_RS00885at 203.004 kb on - strand, within HGI48_RS00885at 203.004 kb on - strand, within HGI48_RS00885at 203.004 kb on - strand, within HGI48_RS00885at 203.004 kb on - strand, within HGI48_RS00885at 203.044 kb on - strand, within HGI48_RS00885at 203.044 kb on - strand, within HGI48_RS00885at 203.317 kb on + strand, within HGI48_RS00885at 203.319 kb on + strand, within HGI48_RS00885at 203.320 kb on - strand, within HGI48_RS00885at 203.320 kb on - strand, within HGI48_RS00885at 203.413 kb on - strand, within HGI48_RS00885at 203.413 kb on - strand, within HGI48_RS00885at 203.475 kb on + strand, within HGI48_RS00885at 203.676 kb on + strand, within HGI48_RS00885at 203.677 kb on - strand, within HGI48_RS00885at 203.806 kb on + strand, within HGI48_RS00885at 203.806 kb on + strand, within HGI48_RS00885at 203.806 kb on + strand, within HGI48_RS00885at 203.817 kb on + strand, within HGI48_RS00885at 203.817 kb on + strand, within HGI48_RS00885at 203.817 kb on + strand, within HGI48_RS00885at 203.817 kb on + strand, within HGI48_RS00885at 203.818 kb on - strand, within HGI48_RS00885at 203.818 kb on - strand, within HGI48_RS00885at 203.818 kb on - strand, within HGI48_RS00885at 203.818 kb on - strand, within HGI48_RS00885at 203.818 kb on - strand, within HGI48_RS00885at 203.974 kb on + strand, within HGI48_RS00885at 203.974 kb on + strandat 204.054 kb on + strand, within HGI48_RS00885at 204.104 kb on + strandat 204.105 kb on - strandat 204.229 kb on + strandat 204.230 kb on - strandat 204.242 kb on - strandat 204.366 kb on + strandat 204.366 kb on + strandat 204.366 kb on + strandat 204.366 kb on + strandat 204.366 kb on + strandat 204.366 kb on + strandat 204.366 kb on + strandat 204.367 kb on - strandat 204.367 kb on - strandat 204.368 kb on + strandat 204.368 kb on + strandat 204.368 kb on + strandat 204.368 kb on + strandat 204.368 kb on + strandat 204.368 kb on + strandat 204.369 kb on - strandat 204.369 kb on - strandat 204.369 kb on - strandat 204.369 kb on - strandat 204.382 kb on - strandat 204.396 kb on + strandat 204.396 kb on + strandat 204.399 kb on + strandat 204.399 kb on + strandat 204.399 kb on + strandat 204.400 kb on - strandat 204.400 kb on - strandat 204.426 kb on - strandat 204.439 kb on - strandat 204.532 kb on + strandat 204.533 kb on - strandat 204.533 kb on - strandat 204.533 kb on - strandat 204.697 kb on + strand, within HGI48_RS00890at 204.719 kb on + strand, within HGI48_RS00890at 204.720 kb on - strand, within HGI48_RS00890at 204.935 kb on + strand, within HGI48_RS00890at 204.935 kb on + strand, within HGI48_RS00890at 204.935 kb on + strand, within HGI48_RS00890at 204.936 kb on - strand, within HGI48_RS00890at 205.153 kb on + strand, within HGI48_RS00890at 205.154 kb on - strand, within HGI48_RS00890at 205.197 kb on + strand, within HGI48_RS00890at 205.197 kb on + strand, within HGI48_RS00890at 205.197 kb on + strand, within HGI48_RS00890at 205.198 kb on - strand, within HGI48_RS00890at 205.198 kb on - strand, within HGI48_RS00890at 205.198 kb on - strand, within HGI48_RS00890at 205.198 kb on - strand, within HGI48_RS00890at 205.198 kb on - strand, within HGI48_RS00890

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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201,859 - -1.1
201,859 - +2.8
201,859 - -0.1
201,935 + +0.5
201,935 + +0.5
201,935 + +1.8
201,936 - -0.7
201,981 + -2.2
201,981 + -2.3
201,981 + -2.2
201,982 - -1.0
201,990 - +0.7
201,998 + -3.6
202,051 + HGI48_RS00880 0.11 -2.2
202,052 - HGI48_RS00880 0.11 +0.8
202,413 + HGI48_RS00880 0.58 -0.9
202,413 + HGI48_RS00880 0.58 +0.7
202,590 + HGI48_RS00880 0.80 +0.6
202,590 + HGI48_RS00880 0.80 +0.5
202,590 + HGI48_RS00880 0.80 -2.3
202,590 + HGI48_RS00880 0.80 -2.4
202,590 + HGI48_RS00880 0.80 +1.8
202,591 - HGI48_RS00880 0.81 +0.8
202,591 - HGI48_RS00880 0.81 -2.8
202,591 - HGI48_RS00880 0.81 +1.0
202,853 + -1.9
202,853 + -1.5
202,853 + +1.2
202,853 + +2.0
202,853 + +1.3
202,853 + -0.2
202,853 + -2.8
202,854 - +2.2
202,854 - -0.3
202,854 - -3.5
202,854 - +1.6
202,857 + +0.9
202,857 + -1.7
202,857 + +0.4
202,858 - -1.7
202,858 - -1.3
202,905 + +0.6
203,003 + HGI48_RS00885 0.11 +0.8
203,003 + HGI48_RS00885 0.11 +2.0
203,004 - HGI48_RS00885 0.11 -0.4
203,004 - HGI48_RS00885 0.11 +1.4
203,004 - HGI48_RS00885 0.11 -1.5
203,004 - HGI48_RS00885 0.11 +1.3
203,044 - HGI48_RS00885 0.14 -0.2
203,044 - HGI48_RS00885 0.14 -2.2
203,317 + HGI48_RS00885 0.33 -3.3
203,319 + HGI48_RS00885 0.34 -0.5
203,320 - HGI48_RS00885 0.34 +1.5
203,320 - HGI48_RS00885 0.34 -0.2
203,413 - HGI48_RS00885 0.40 -1.5
203,413 - HGI48_RS00885 0.40 -2.9
203,475 + HGI48_RS00885 0.45 +0.3
203,676 + HGI48_RS00885 0.60 -2.2
203,677 - HGI48_RS00885 0.60 +1.7
203,806 + HGI48_RS00885 0.69 -3.1
203,806 + HGI48_RS00885 0.69 +0.6
203,806 + HGI48_RS00885 0.69 -1.9
203,817 + HGI48_RS00885 0.70 +1.5
203,817 + HGI48_RS00885 0.70 +3.1
203,817 + HGI48_RS00885 0.70 -1.7
203,817 + HGI48_RS00885 0.70 -2.2
203,818 - HGI48_RS00885 0.70 -0.7
203,818 - HGI48_RS00885 0.70 -2.8
203,818 - HGI48_RS00885 0.70 +1.6
203,818 - HGI48_RS00885 0.70 -1.1
203,818 - HGI48_RS00885 0.70 +3.3
203,974 + HGI48_RS00885 0.81 -2.3
203,974 + -0.3
204,054 + HGI48_RS00885 0.87 -0.7
204,104 + +0.3
204,105 - +2.3
204,229 + +1.3
204,230 - +1.5
204,242 - -0.8
204,366 + -0.5
204,366 + +1.2
204,366 + +1.7
204,366 + -0.4
204,366 + +1.3
204,366 + +2.8
204,366 + +2.3
204,367 - +0.5
204,367 - +0.3
204,368 + -1.1
204,368 + -1.3
204,368 + +2.8
204,368 + -0.3
204,368 + +2.3
204,368 + -0.3
204,369 - +1.3
204,369 - +0.9
204,369 - +0.7
204,369 - +0.9
204,382 - -1.7
204,396 + -1.7
204,396 + -1.3
204,399 + -1.9
204,399 + -1.5
204,399 + +3.9
204,400 - +0.8
204,400 - +0.4
204,426 - -1.5
204,439 - -2.7
204,532 + -1.1
204,533 - +0.5
204,533 - +0.6
204,533 - +1.0
204,697 + HGI48_RS00890 0.18 -1.0
204,719 + HGI48_RS00890 0.20 +0.3
204,720 - HGI48_RS00890 0.20 +1.3
204,935 + HGI48_RS00890 0.34 -2.9
204,935 + HGI48_RS00890 0.34 -0.7
204,935 + HGI48_RS00890 0.34 -2.9
204,936 - HGI48_RS00890 0.34 -1.7
205,153 + HGI48_RS00890 0.48 -1.9
205,154 - HGI48_RS00890 0.48 +1.0
205,197 + HGI48_RS00890 0.51 -2.7
205,197 + HGI48_RS00890 0.51 +0.1
205,197 + HGI48_RS00890 0.51 +1.0
205,198 - HGI48_RS00890 0.51 -0.7
205,198 - HGI48_RS00890 0.51 +1.0
205,198 - HGI48_RS00890 0.51 +2.6
205,198 - HGI48_RS00890 0.51 +0.5
205,198 - HGI48_RS00890 0.51 +1.3

Or see this region's nucleotide sequence