Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00075

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
20,357	+		HGI48_RS00070	0.38	+1.7
20,357	+		HGI48_RS00070	0.38	+1.6
20,432	+		HGI48_RS00070	0.43	-2.2
20,433	-		HGI48_RS00070	0.43	-1.8
20,497	+				+0.2
20,548	+		HGI48_RS00070	0.51	+2.1
20,617	-		HGI48_RS00070	0.56	+2.5
20,678	+		HGI48_RS00070	0.61	-1.8
20,678	+		HGI48_RS00070	0.61	-1.1
20,678	+		HGI48_RS00070	0.61	-1.0
20,679	-		HGI48_RS00070	0.61	+0.8
20,679	-		HGI48_RS00070	0.61	+1.6
20,679	-		HGI48_RS00070	0.61	+1.2
20,679	-		HGI48_RS00070	0.61	-1.8
20,694	+		HGI48_RS00070	0.62	+0.7
20,704	+		HGI48_RS00070	0.62	-0.1
20,707	-		HGI48_RS00070	0.63	+0.6
20,707	-		HGI48_RS00070	0.63	+0.5
20,710	+		HGI48_RS00070	0.63	+0.3
20,711	-		HGI48_RS00070	0.63	+1.8
20,713	-		HGI48_RS00070	0.63	-3.5
20,788	-		HGI48_RS00070	0.68	-0.3
20,809	-		HGI48_RS00070	0.70	-0.3
20,817	-		HGI48_RS00070	0.70	-1.3
20,831	+		HGI48_RS00070	0.71	+0.0
20,832	-		HGI48_RS00070	0.72	+2.2
20,873	-		HGI48_RS00070	0.74	+1.1
20,911	-		HGI48_RS00070	0.77	+1.1
20,987	+		HGI48_RS00070	0.82	-0.1
20,988	-		HGI48_RS00070	0.83	+0.5
21,043	-		HGI48_RS00070	0.86	+0.8
21,117	+				-2.6
21,142	+				-0.8
21,143	-				+0.1
21,144	+				-0.3
21,144	+				+0.7
21,144	+				-1.1
21,145	-				-1.1
21,216	+				-2.8
21,220	+				+0.2
21,289	+				-0.8
21,289	+				+0.5
21,289	+				-1.9
21,290	-				-2.1
21,304	-				+1.2
21,328	+		HGI48_RS00075	0.10	-1.6
21,329	-		HGI48_RS00075	0.10	-1.3
21,329	-		HGI48_RS00075	0.10	-1.3
21,329	-		HGI48_RS00075	0.10	+2.1
21,355	+		HGI48_RS00075	0.13	+1.4
21,356	-		HGI48_RS00075	0.13	+0.1
21,356	-		HGI48_RS00075	0.13	+1.8
21,475	+		HGI48_RS00075	0.24	+0.8
21,475	+		HGI48_RS00075	0.24	-1.1
21,475	+		HGI48_RS00075	0.24	+1.7
21,475	+		HGI48_RS00075	0.24	+0.4
21,475	+		HGI48_RS00075	0.24	-1.6
21,475	+		HGI48_RS00075	0.24	+0.3
21,475	+				+2.6
21,476	-		HGI48_RS00075	0.24	-2.2
21,476	-		HGI48_RS00075	0.24	+0.2
21,476	-		HGI48_RS00075	0.24	-2.9
21,508	-		HGI48_RS00075	0.27	-1.9
21,657	+		HGI48_RS00075	0.41	+0.8
21,685	+		HGI48_RS00075	0.43	+1.2
21,685	+		HGI48_RS00075	0.43	+2.4
21,746	+		HGI48_RS00075	0.49	-1.6
21,746	+		HGI48_RS00075	0.49	-1.6
21,747	-		HGI48_RS00075	0.49	+1.2
21,748	+		HGI48_RS00075	0.49	+1.2
21,749	-		HGI48_RS00075	0.49	+0.9
21,749	-		HGI48_RS00075	0.49	+0.1
21,749	-		HGI48_RS00075	0.49	-1.8
21,749	-		HGI48_RS00075	0.49	+0.8
21,749	-		HGI48_RS00075	0.49	+1.2
21,772	+		HGI48_RS00075	0.52	+0.1
21,773	-				+3.4
21,911	-		HGI48_RS00075	0.65	-1.3
21,914	-		HGI48_RS00075	0.65	-0.6
21,914	-		HGI48_RS00075	0.65	+0.0
22,017	+		HGI48_RS00075	0.75	-1.3
22,018	-		HGI48_RS00075	0.75	+0.5
22,116	+		HGI48_RS00075	0.84	-0.5
22,136	-		HGI48_RS00075	0.86	-2.3
22,154	-		HGI48_RS00075	0.87	+0.1
22,161	-				-0.3
22,183	+				+0.6
22,194	+				+0.5
22,195	-				-0.8
22,198	+				+3.5
22,199	-				-1.6
22,204	+				-2.7
22,204	+				-1.8
22,205	-				+3.9
22,207	+				-0.3
22,327	+				-1.9
22,327	+				-1.1
22,327	+				-0.1
22,328	-				+0.2
22,331	+				-1.8
22,331	+				-1.1
22,487	+		HGI48_RS00080	0.14	-3.0
22,505	+		HGI48_RS00080	0.16	-0.6
22,505	+		HGI48_RS00080	0.16	-2.2
22,505	+		HGI48_RS00080	0.16	-0.7
22,505	+		HGI48_RS00080	0.16	+0.7
22,505	+				-0.3
22,505	+		HGI48_RS00080	0.16	-0.8
22,506	-		HGI48_RS00080	0.16	-2.1
22,506	-		HGI48_RS00080	0.16	+0.8
22,506	-		HGI48_RS00080	0.16	+0.0
22,509	+		HGI48_RS00080	0.16	-1.6
22,509	+		HGI48_RS00080	0.16	-1.6
22,509	+		HGI48_RS00080	0.16	-1.1
22,509	+		HGI48_RS00080	0.16	+0.5
22,509	+		HGI48_RS00080	0.16	+2.7
22,510	-		HGI48_RS00080	0.16	-2.2
22,510	-		HGI48_RS00080	0.16	+1.0
22,510	-		HGI48_RS00080	0.16	-1.1
22,522	+		HGI48_RS00080	0.17	-0.8
22,522	+		HGI48_RS00080	0.17	-1.1
22,522	+		HGI48_RS00080	0.17	-1.8
22,523	-		HGI48_RS00080	0.17	-1.8
22,523	-		HGI48_RS00080	0.17	+0.2
22,523	-		HGI48_RS00080	0.17	-0.7
22,579	+		HGI48_RS00080	0.22	-1.8
22,579	+		HGI48_RS00080	0.22	+1.1
22,580	-		HGI48_RS00080	0.22	-2.1
22,580	-				+0.2
22,626	-		HGI48_RS00080	0.26	-1.8
22,699	+				+2.5
22,730	+		HGI48_RS00080	0.34	+0.7
22,736	-		HGI48_RS00080	0.35	+1.1
22,769	+		HGI48_RS00080	0.38	+0.8
22,770	-		HGI48_RS00080	0.38	-1.3
22,770	-		HGI48_RS00080	0.38	-0.6
22,790	-		HGI48_RS00080	0.39	+0.2
22,828	-				+0.2
22,828	-		HGI48_RS00080	0.43	-2.3
22,852	+		HGI48_RS00080	0.45	-1.8
22,852	+		HGI48_RS00080	0.45	-1.1
22,852	+		HGI48_RS00080	0.45	+0.7
22,942	-		HGI48_RS00080	0.52	+1.2
23,031	-		HGI48_RS00080	0.59	+1.7
23,051	+		HGI48_RS00080	0.61	+0.6
23,051	+				+0.2
23,052	-		HGI48_RS00080	0.61	-0.8
23,052	-		HGI48_RS00080	0.61	+0.2
23,089	+		HGI48_RS00080	0.64	+0.9
23,114	-		HGI48_RS00080	0.66	-1.3
23,114	-		HGI48_RS00080	0.66	-1.6
23,114	-		HGI48_RS00080	0.66	+1.1
23,116	+		HGI48_RS00080	0.66	+0.4
23,159	+		HGI48_RS00080	0.70	-1.6
23,181	+		HGI48_RS00080	0.72	-1.3
23,181	+		HGI48_RS00080	0.72	-1.3
23,182	-		HGI48_RS00080	0.72	-1.3
23,190	+				+2.7
23,191	-		HGI48_RS00080	0.72	+1.2
23,191	-		HGI48_RS00080	0.72	-1.3
23,255	+		HGI48_RS00080	0.78	+0.6
23,264	+		HGI48_RS00080	0.78	-1.6
23,264	+		HGI48_RS00080	0.78	+0.3
23,264	+		HGI48_RS00080	0.78	+0.3