Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21680

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,836,155	+				+1.0
4,836,155	+				+0.8
4,836,161	+				-1.7
4,836,161	+				-0.3
4,836,162	-				+0.5
4,836,162	-				-1.3
4,836,212	-				+1.8
4,836,363	-				+2.3
4,836,473	-		HGI48_RS21675	0.33	-0.4
4,836,480	+		HGI48_RS21675	0.34	+1.1
4,836,480	+		HGI48_RS21675	0.34	-0.1
4,836,480	+		HGI48_RS21675	0.34	+2.1
4,836,480	+		HGI48_RS21675	0.34	-1.3
4,836,480	+		HGI48_RS21675	0.34	-1.9
4,836,480	+		HGI48_RS21675	0.34	-2.2
4,836,480	+		HGI48_RS21675	0.34	-1.3
4,836,480	+		HGI48_RS21675	0.34	+0.7
4,836,480	+		HGI48_RS21675	0.34	-1.7
4,836,480	+		HGI48_RS21675	0.34	+1.4
4,836,480	+		HGI48_RS21675	0.34	+1.7
4,836,481	-		HGI48_RS21675	0.34	-0.0
4,836,481	-		HGI48_RS21675	0.34	-1.1
4,836,481	-		HGI48_RS21675	0.34	-1.1
4,836,481	-		HGI48_RS21675	0.34	-0.7
4,836,481	-		HGI48_RS21675	0.34	-2.3
4,836,481	-		HGI48_RS21675	0.34	-0.7
4,836,481	-		HGI48_RS21675	0.34	-1.5
4,836,481	-		HGI48_RS21675	0.34	-0.7
4,836,481	-		HGI48_RS21675	0.34	-1.1
4,836,481	-		HGI48_RS21675	0.34	-1.3
4,836,481	-		HGI48_RS21675	0.34	-0.9
4,836,481	-		HGI48_RS21675	0.34	+0.9
4,836,481	-		HGI48_RS21675	0.34	+1.7
4,836,481	-		HGI48_RS21675	0.34	+0.4
4,836,481	-		HGI48_RS21675	0.34	-0.7
4,836,593	-		HGI48_RS21675	0.45	+1.0
4,836,593	-		HGI48_RS21675	0.45	+0.0
4,836,594	+		HGI48_RS21675	0.45	+0.9
4,836,594	+		HGI48_RS21675	0.45	+0.5
4,836,594	+		HGI48_RS21675	0.45	+0.6
4,836,594	+		HGI48_RS21675	0.45	-1.1
4,836,594	+		HGI48_RS21675	0.45	-2.4
4,836,594	+		HGI48_RS21675	0.45	-2.7
4,836,594	+		HGI48_RS21675	0.45	+1.0
4,836,594	+		HGI48_RS21675	0.45	+0.3
4,836,595	-		HGI48_RS21675	0.46	-1.7
4,836,595	-		HGI48_RS21675	0.46	+0.5
4,836,595	-		HGI48_RS21675	0.46	-0.9
4,836,595	-		HGI48_RS21675	0.46	-2.1
4,836,598	+		HGI48_RS21675	0.46	-1.1
4,836,599	-		HGI48_RS21675	0.46	-0.1
4,836,599	-		HGI48_RS21675	0.46	+0.3
4,836,672	+		HGI48_RS21675	0.53	-1.5
4,836,752	+		HGI48_RS21675	0.62	+1.5
4,836,753	-		HGI48_RS21675	0.62	-0.0
4,836,914	+		HGI48_RS21675	0.78	+0.2
4,836,914	+		HGI48_RS21675	0.78	+0.4
4,836,915	-				+0.3
4,837,061	+				+1.4
4,837,132	+				-1.1
4,837,132	+				-1.7
4,837,132	+				-1.3
4,837,193	+				+1.0
4,837,193	+				+0.1
4,837,230	+				-0.0
4,837,230	+				-0.8
4,837,281	+		HGI48_RS21680	0.14	-0.8
4,837,281	+		HGI48_RS21680	0.14	-2.5
4,837,281	+		HGI48_RS21680	0.14	-1.1
4,837,281	+		HGI48_RS21680	0.14	-0.7
4,837,281	+		HGI48_RS21680	0.14	-1.5
4,837,281	+		HGI48_RS21680	0.14	-1.1
4,837,281	+				+2.8
4,837,282	-		HGI48_RS21680	0.14	+0.5
4,837,282	-		HGI48_RS21680	0.14	-1.5
4,837,282	-		HGI48_RS21680	0.14	-0.7
4,837,282	-		HGI48_RS21680	0.14	-2.9
4,837,282	-				-0.3
4,837,282	-		HGI48_RS21680	0.14	+0.7
4,837,282	-		HGI48_RS21680	0.14	-1.5
4,837,284	+		HGI48_RS21680	0.14	+0.9
4,837,284	+		HGI48_RS21680	0.14	+0.6
4,837,284	+		HGI48_RS21680	0.14	-1.5
4,837,285	-		HGI48_RS21680	0.14	-1.7
4,837,300	+		HGI48_RS21680	0.16	+0.4
4,837,300	+				+3.1
4,837,300	+		HGI48_RS21680	0.16	-1.9
4,837,301	-		HGI48_RS21680	0.16	-1.7
4,837,305	-		HGI48_RS21680	0.16	+1.5
4,837,336	+		HGI48_RS21680	0.19	+0.5
4,837,337	-				+3.3
4,837,354	+		HGI48_RS21680	0.21	+0.6
4,837,464	+				-0.3
4,837,464	+		HGI48_RS21680	0.31	-2.1
4,837,465	-		HGI48_RS21680	0.31	-1.5
4,837,465	-		HGI48_RS21680	0.31	+0.5
4,837,465	-		HGI48_RS21680	0.31	-0.7
4,837,465	-		HGI48_RS21680	0.31	-1.1
4,837,465	-		HGI48_RS21680	0.31	-1.1
4,837,492	+		HGI48_RS21680	0.34	+1.8
4,837,552	+		HGI48_RS21680	0.39	+0.7
4,837,552	+		HGI48_RS21680	0.39	-1.1
4,837,552	+		HGI48_RS21680	0.39	-1.3
4,837,553	-		HGI48_RS21680	0.40	+1.9
4,837,553	-		HGI48_RS21680	0.40	-1.9
4,837,553	-		HGI48_RS21680	0.40	-1.3
4,837,553	-		HGI48_RS21680	0.40	+0.3
4,837,553	-		HGI48_RS21680	0.40	-1.3
4,837,553	-		HGI48_RS21680	0.40	-1.3
4,837,615	+		HGI48_RS21680	0.45	-1.3
4,837,615	+		HGI48_RS21680	0.45	+0.7
4,837,616	-		HGI48_RS21680	0.45	-0.1
4,837,617	+		HGI48_RS21680	0.46	-0.7
4,837,633	+		HGI48_RS21680	0.47	+0.8
4,837,634	-		HGI48_RS21680	0.47	-1.1
4,837,634	-		HGI48_RS21680	0.47	-1.3
4,837,642	+		HGI48_RS21680	0.48	-1.3
4,837,642	+				+1.3
4,837,642	+		HGI48_RS21680	0.48	+0.3
4,837,673	+		HGI48_RS21680	0.51	-0.3
4,837,674	-		HGI48_RS21680	0.51	-1.3
4,837,674	-		HGI48_RS21680	0.51	-1.1
4,837,677	-		HGI48_RS21680	0.51	+2.6
4,837,735	+		HGI48_RS21680	0.57	-0.5
4,837,735	+		HGI48_RS21680	0.57	+3.0
4,837,798	+		HGI48_RS21680	0.62	-1.7
4,837,798	+		HGI48_RS21680	0.62	+0.9
4,837,857	-				-0.3
4,837,927	+		HGI48_RS21680	0.75	+0.3
4,837,947	+		HGI48_RS21680	0.76	-0.3
4,837,947	+		HGI48_RS21680	0.76	+1.1
4,837,981	+		HGI48_RS21680	0.80	-1.5
4,837,981	+		HGI48_RS21680	0.80	-1.7
4,837,981	+		HGI48_RS21680	0.80	-0.7
4,837,982	-		HGI48_RS21680	0.80	+0.3
4,838,001	-				-0.3
4,838,001	-		HGI48_RS21680	0.81	-1.3
4,838,001	-		HGI48_RS21680	0.81	+2.0
4,838,002	+		HGI48_RS21680	0.82	+0.7
4,838,002	+		HGI48_RS21680	0.82	-1.3
4,838,002	+		HGI48_RS21680	0.82	-2.3
4,838,003	-		HGI48_RS21680	0.82	-1.0
4,838,003	-				+1.7
4,838,035	+		HGI48_RS21680	0.85	+3.3
4,838,035	+		HGI48_RS21680	0.85	-0.0
4,838,036	-		HGI48_RS21680	0.85	-0.2
4,838,036	-		HGI48_RS21680	0.85	+0.2
4,838,036	-		HGI48_RS21680	0.85	+1.3
4,838,036	-		HGI48_RS21680	0.85	+2.6
4,838,036	-		HGI48_RS21680	0.85	+2.3
4,838,036	-		HGI48_RS21680	0.85	-3.2
4,838,036	-				-0.3
4,838,049	+		HGI48_RS21680	0.86	-1.1
4,838,049	+		HGI48_RS21680	0.86	+1.7
4,838,049	+		HGI48_RS21680	0.86	-0.7
4,838,050	-		HGI48_RS21680	0.86	-1.3
4,838,050	-		HGI48_RS21680	0.86	-1.7
4,838,050	-		HGI48_RS21680	0.86	-0.7
4,838,175	+				-3.5
4,838,175	+				+0.7
4,838,175	+				-0.1
4,838,175	+				-1.1
4,838,175	+				-1.9
4,838,175	+				+0.9
4,838,175	+				-0.0
4,838,176	-				-1.5
4,838,176	-				+0.3
4,838,176	-				+2.7
4,838,176	-				-2.4
4,838,176	-				-1.7
4,838,176	-				-1.3
4,838,179	+				-0.3
4,838,179	+				-1.1
4,838,179	+				+1.0
4,838,179	+				-2.2
4,838,179	+				+2.4
4,838,179	+				-0.5
4,838,179	+				+1.3
4,838,179	+				-0.3
4,838,179	+				+2.6
4,838,179	+				-0.5
4,838,179	+				-2.1
4,838,179	+				-1.5
4,838,179	+				-2.7
4,838,179	+				-2.1
4,838,179	+				-0.7
4,838,179	+				-1.5
4,838,179	+				-2.3
4,838,179	+				-0.5
4,838,179	+				-1.2
4,838,180	-				+1.0
4,838,180	-				+2.8
4,838,180	-				-3.2
4,838,180	-				+1.6
4,838,180	-				-0.7
4,838,180	-				-2.2
4,838,180	-				-1.7
4,838,180	-				+0.8
4,838,180	-				-3.1
4,838,180	-				-0.7
4,838,180	-				+0.3
4,838,180	-				-1.1
4,838,180	-				-0.0
4,838,180	-				+3.3
4,838,180	-				-0.3
4,838,180	-				-0.3
4,838,180	-				-1.5
4,838,180	-				-0.4
4,838,180	-				-1.7
4,838,180	-				+0.2
4,838,180	-				-0.7
4,838,180	-				-1.3
4,838,180	-				-0.7
4,838,180	-				-0.7
4,838,180	-				+0.1
4,838,180	-				+0.8
4,838,180	-				-0.3
4,838,180	-				+0.5
4,838,180	-				-2.2
4,838,180	-				-1.3
4,838,185	+				-0.3
4,838,185	+				-2.8
4,838,186	-				-1.1
4,838,242	+				-2.4
4,838,243	-				-1.7
4,838,291	-				-1.3
4,838,401	+		HGI48_RS21685	0.11	-1.5
4,838,401	+		HGI48_RS21685	0.11	+1.6
4,838,401	+		HGI48_RS21685	0.11	-0.4
4,838,402	-		HGI48_RS21685	0.11	-0.6
4,838,402	-		HGI48_RS21685	0.11	+1.0
4,838,402	-				+0.3
4,838,442	+		HGI48_RS21685	0.14	-1.5
4,838,442	+		HGI48_RS21685	0.14	-1.1
4,838,442	+		HGI48_RS21685	0.14	-3.5
4,838,442	+		HGI48_RS21685	0.14	-2.3
4,838,443	-				+0.3
4,838,443	-		HGI48_RS21685	0.14	+0.7
4,838,506	+		HGI48_RS21685	0.17	+2.9
4,838,506	+		HGI48_RS21685	0.17	+1.3
4,838,507	-		HGI48_RS21685	0.17	+2.1
4,838,539	+		HGI48_RS21685	0.19	-0.7
4,838,539	+		HGI48_RS21685	0.19	-0.5
4,838,539	+		HGI48_RS21685	0.19	+1.9
4,838,540	-		HGI48_RS21685	0.19	-2.2
4,838,662	+				+3.7
4,838,663	-		HGI48_RS21685	0.26	-2.3
4,838,699	+		HGI48_RS21685	0.28	+0.3
4,838,699	+				-0.3
4,838,700	-		HGI48_RS21685	0.28	+0.8
4,838,702	+		HGI48_RS21685	0.28	-1.9
4,838,702	+		HGI48_RS21685	0.28	+0.8
4,838,702	+		HGI48_RS21685	0.28	+0.5
4,838,703	-		HGI48_RS21685	0.28	-1.9
4,838,703	-				+1.3
4,838,703	-		HGI48_RS21685	0.28	-0.1
4,838,769	+		HGI48_RS21685	0.32	+0.8
4,838,769	+		HGI48_RS21685	0.32	+1.4
4,838,769	+		HGI48_RS21685	0.32	-0.7
4,838,769	+		HGI48_RS21685	0.32	+1.3
4,838,770	-		HGI48_RS21685	0.32	-2.7
4,838,832	+		HGI48_RS21685	0.36	-0.4
4,838,832	+		HGI48_RS21685	0.36	-1.3
4,838,832	+		HGI48_RS21685	0.36	-2.8
4,838,832	+		HGI48_RS21685	0.36	-2.3
4,838,832	+		HGI48_RS21685	0.36	-0.7
4,838,832	+		HGI48_RS21685	0.36	-3.4
4,838,832	+		HGI48_RS21685	0.36	+1.3
4,838,832	+		HGI48_RS21685	0.36	-1.3
4,838,833	-		HGI48_RS21685	0.36	-1.9
4,838,869	+		HGI48_RS21685	0.38	+0.3
4,838,870	-		HGI48_RS21685	0.38	+0.5
4,838,884	-		HGI48_RS21685	0.39	+0.8
4,838,884	-		HGI48_RS21685	0.39	+0.1
4,838,884	-				+1.3
4,838,897	+		HGI48_RS21685	0.39	-1.7
4,838,897	+		HGI48_RS21685	0.39	+2.8
4,838,897	+		HGI48_RS21685	0.39	-1.9
4,838,898	-		HGI48_RS21685	0.39	+1.8
4,838,924	+				+0.3
4,838,925	-		HGI48_RS21685	0.41	+1.1
4,838,925	-		HGI48_RS21685	0.41	-2.3
4,838,979	-		HGI48_RS21685	0.44	+0.4
4,838,985	+		HGI48_RS21685	0.44	+0.1
4,838,986	-		HGI48_RS21685	0.44	-0.7
4,839,001	+				+1.7
4,839,021	+		HGI48_RS21685	0.46	+1.3
4,839,022	-		HGI48_RS21685	0.46	+0.8
4,839,022	-		HGI48_RS21685	0.46	-0.6
4,839,024	+		HGI48_RS21685	0.46	-2.7
4,839,024	+		HGI48_RS21685	0.46	+0.5
4,839,024	+		HGI48_RS21685	0.46	-2.3
4,839,025	-		HGI48_RS21685	0.46	-2.3
4,839,025	-		HGI48_RS21685	0.46	+0.6
4,839,053	+		HGI48_RS21685	0.48	+0.8
4,839,053	+		HGI48_RS21685	0.48	-0.7
4,839,053	+		HGI48_RS21685	0.48	+0.6
4,839,053	+		HGI48_RS21685	0.48	-2.8
4,839,053	+		HGI48_RS21685	0.48	-0.7
4,839,054	-		HGI48_RS21685	0.48	-0.5
4,839,054	-		HGI48_RS21685	0.48	+0.4
4,839,054	-		HGI48_RS21685	0.48	-1.1
4,839,054	-		HGI48_RS21685	0.48	+0.3
4,839,105	+		HGI48_RS21685	0.51	+0.3
4,839,105	+		HGI48_RS21685	0.51	-1.3
4,839,106	-				+1.3
4,839,106	-		HGI48_RS21685	0.51	-1.3
4,839,106	-		HGI48_RS21685	0.51	-3.1
4,839,106	-		HGI48_RS21685	0.51	+1.6
4,839,109	-		HGI48_RS21685	0.51	-1.3
4,839,161	+		HGI48_RS21685	0.54	-1.1
4,839,161	+		HGI48_RS21685	0.54	-0.7
4,839,161	+		HGI48_RS21685	0.54	-0.7
4,839,161	+		HGI48_RS21685	0.54	+1.8
4,839,161	+		HGI48_RS21685	0.54	-1.1
4,839,162	-		HGI48_RS21685	0.54	-1.3
4,839,167	-		HGI48_RS21685	0.54	-0.7