Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21190

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,726,676	+				-3.1
4,726,716	+				+1.0
4,726,717	-				+0.5
4,726,832	+				-1.1
4,726,832	+				-0.1
4,726,832	+				-1.7
4,726,832	+				+0.2
4,726,832	+				+0.3
4,726,833	-				+2.2
4,726,833	-				+0.8
4,726,833	-				+1.8
4,726,833	-				-1.1
4,726,849	-				-0.3
4,726,856	+				+0.7
4,726,856	+				-2.4
4,726,897	+				+1.3
4,726,898	-				+1.7
4,726,898	-				+0.3
4,726,898	-				-0.7
4,726,898	-				+0.3
4,726,898	-				-2.3
4,726,898	-				-1.9
4,726,898	-				-0.8
4,726,916	+		HGI48_RS21185	0.12	-2.2
4,726,916	+		HGI48_RS21185	0.12	+3.1
4,726,916	+				+0.3
4,726,916	+		HGI48_RS21185	0.12	-3.1
4,726,916	+		HGI48_RS21185	0.12	-2.6
4,726,916	+				-0.3
4,726,916	+		HGI48_RS21185	0.12	-1.9
4,726,917	-		HGI48_RS21185	0.12	-1.9
4,726,917	-		HGI48_RS21185	0.12	+1.8
4,726,930	+		HGI48_RS21185	0.14	-1.2
4,726,930	+		HGI48_RS21185	0.14	-0.7
4,726,931	-		HGI48_RS21185	0.14	-2.3
4,726,931	-		HGI48_RS21185	0.14	+1.6
4,726,931	-		HGI48_RS21185	0.14	-0.1
4,727,160	+				+2.5
4,727,160	+		HGI48_RS21185	0.47	-2.1
4,727,160	+		HGI48_RS21185	0.47	+1.8
4,727,160	+				-0.3
4,727,161	-				+0.3
4,727,161	-		HGI48_RS21185	0.47	+0.8
4,727,161	-		HGI48_RS21185	0.47	-1.3
4,727,161	-		HGI48_RS21185	0.47	+2.7
4,727,172	-		HGI48_RS21185	0.49	-1.9
4,727,246	+		HGI48_RS21185	0.60	-1.5
4,727,246	+		HGI48_RS21185	0.60	-1.3
4,727,246	+				-0.3
4,727,247	-		HGI48_RS21185	0.60	+0.2
4,727,247	-		HGI48_RS21185	0.60	-1.3
4,727,247	-		HGI48_RS21185	0.60	-1.3
4,727,247	-		HGI48_RS21185	0.60	+1.3
4,727,343	+				-0.3
4,727,343	+		HGI48_RS21185	0.74	-1.1
4,727,344	-		HGI48_RS21185	0.74	-0.7
4,727,344	-				+0.3
4,727,344	-		HGI48_RS21185	0.74	+0.6
4,727,344	-		HGI48_RS21185	0.74	+0.5
4,727,355	+		HGI48_RS21185	0.75	+0.7
4,727,355	+		HGI48_RS21185	0.75	-0.9
4,727,356	-		HGI48_RS21185	0.75	-1.7
4,727,524	-				+0.5
4,727,545	+				-0.1
4,727,545	+				-0.7
4,727,546	-				+0.8
4,727,631	+				-1.9
4,727,705	+				-0.3
4,727,705	+				-2.3
4,727,705	+				-3.9
4,727,705	+				-1.1
4,727,705	+				+0.3
4,727,705	+				-1.1
4,727,705	+				-0.1
4,727,705	+				-0.2
4,727,705	+				-1.3
4,727,705	+				+0.3
4,727,705	+				-1.1
4,727,705	+				+0.8
4,727,705	+				-1.3
4,727,705	+				-0.7
4,727,705	+				-1.3
4,727,706	-				-1.3
4,727,706	-				-0.9
4,727,706	-				-2.3
4,727,706	-				-1.7
4,727,706	-				-1.7
4,727,706	-				+0.3
4,727,706	-				-0.0
4,727,706	-				-0.7
4,727,706	-				+0.0
4,727,706	-				+1.7
4,727,706	-				+3.3
4,727,706	-				+0.1
4,727,706	-				-0.0
4,727,706	-				+0.1
4,727,706	-				-2.4
4,727,706	-				-1.5
4,727,715	+				+1.8
4,727,716	-				+0.8
4,727,795	-		HGI48_RS21190	0.13	-1.5
4,727,880	+		HGI48_RS21190	0.17	+0.9
4,727,880	+		HGI48_RS21190	0.17	-1.5
4,727,880	+		HGI48_RS21190	0.17	-1.7
4,728,007	+		HGI48_RS21190	0.23	-1.9
4,728,172	+		HGI48_RS21190	0.31	+2.8
4,728,172	+		HGI48_RS21190	0.31	+0.7
4,728,172	+		HGI48_RS21190	0.31	-0.1
4,728,173	-		HGI48_RS21190	0.31	-0.2
4,728,229	+		HGI48_RS21190	0.34	-0.3
4,728,639	+		HGI48_RS21190	0.54	-1.9
4,728,640	-		HGI48_RS21190	0.54	+1.0
4,728,664	+				-0.3
4,728,664	+				+4.1
4,728,664	+		HGI48_RS21190	0.55	-1.5
4,728,665	-				-0.3
4,728,665	-		HGI48_RS21190	0.55	+2.3
4,728,842	+		HGI48_RS21190	0.63	-1.7
4,728,842	+		HGI48_RS21190	0.63	-1.5
4,728,983	+		HGI48_RS21190	0.70	+1.0
4,728,983	+		HGI48_RS21190	0.70	-0.7
4,729,046	+		HGI48_RS21190	0.73	-0.7
4,729,046	+				+3.6
4,729,047	-		HGI48_RS21190	0.73	-0.7
4,729,047	-		HGI48_RS21190	0.73	+1.4
4,729,077	+		HGI48_RS21190	0.75	-1.1
4,729,078	+		HGI48_RS21190	0.75	+0.8
4,729,079	-		HGI48_RS21190	0.75	+1.0
4,729,079	-		HGI48_RS21190	0.75	-1.3
4,729,079	-		HGI48_RS21190	0.75	-0.7
4,729,147	+		HGI48_RS21190	0.78	-1.3
4,729,148	-				+0.3
4,729,148	-		HGI48_RS21190	0.78	-0.3
4,729,215	+		HGI48_RS21190	0.81	+0.0
4,729,215	+		HGI48_RS21190	0.81	-1.1
4,729,216	-				-0.3
4,729,308	+		HGI48_RS21190	0.86	-2.9
4,729,309	-		HGI48_RS21190	0.86	+1.7
4,729,309	-		HGI48_RS21190	0.86	+1.7
4,729,316	+		HGI48_RS21190	0.86	+1.0
4,729,316	+		HGI48_RS21190	0.86	+1.7
4,729,316	+		HGI48_RS21190	0.86	-1.9
4,729,316	+		HGI48_RS21190	0.86	-2.8
4,729,316	+		HGI48_RS21190	0.86	+1.8
4,729,594	+				-1.5
4,729,594	+				+0.8
4,729,594	+				-2.2
4,729,594	+				-1.5
4,729,594	+				-1.4
4,729,594	+				+0.5
4,729,595	-				+1.6
4,729,595	-				-1.3
4,729,595	-				+0.3
4,729,595	-				-1.3
4,729,595	-				-2.1
4,729,595	-				-0.7
4,729,595	-				-0.0
4,729,656	+				+1.6
4,729,657	-				+0.4
4,729,657	-				+0.1
4,729,676	+				-1.9
4,729,676	+				-1.5
4,729,676	+				-0.7
4,729,676	+				-2.2
4,729,676	+				-0.6
4,729,676	+				-1.1
4,729,676	+				-1.9
4,729,677	-				-1.3
4,729,677	-				-1.1
4,729,677	-				-1.1
4,729,677	-				-0.1
4,729,677	-				-1.3
4,729,677	-				-2.8
4,729,677	-				-2.4
4,729,679	+				+0.0
4,729,680	-				+0.8
4,729,749	+				-0.4
4,729,749	+				+1.5
4,729,785	-				-1.5
4,729,785	-				+1.5
4,729,785	-				+0.8
4,729,785	-				+2.1
4,729,810	+				-0.7
4,729,810	+				-1.3
4,729,810	+				+1.1
4,729,810	+				+0.8
4,729,811	-				+0.3
4,729,854	+				+0.5
4,729,855	-				-1.5
4,730,117	+		HGI48_RS21195	0.24	-0.1
4,730,118	-		HGI48_RS21195	0.24	-1.3
4,730,158	+		HGI48_RS21195	0.27	+0.3
4,730,159	-		HGI48_RS21195	0.27	-1.1
4,730,159	-		HGI48_RS21195	0.27	-0.1
4,730,159	-		HGI48_RS21195	0.27	-1.1
4,730,159	-				+2.8
4,730,191	+		HGI48_RS21195	0.29	-1.1
4,730,439	+		HGI48_RS21195	0.47	-2.4
4,730,440	-		HGI48_RS21195	0.47	+0.7
4,730,440	-		HGI48_RS21195	0.47	+0.5
4,730,482	-		HGI48_RS21195	0.50	-1.8
4,730,565	+		HGI48_RS21195	0.56	-2.1
4,730,566	-		HGI48_RS21195	0.56	+0.7
4,730,566	-		HGI48_RS21195	0.56	-1.3
4,730,566	-		HGI48_RS21195	0.56	+0.3
4,730,566	-		HGI48_RS21195	0.56	-3.4
4,730,566	-		HGI48_RS21195	0.56	-1.7
4,730,566	-		HGI48_RS21195	0.56	-1.7
4,730,568	+		HGI48_RS21195	0.56	-0.9
4,730,569	-		HGI48_RS21195	0.56	-1.5
4,730,569	-		HGI48_RS21195	0.56	+1.1