Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21145

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,717,283	+		HGI48_RS21135	0.79	-1.1
4,717,284	-		HGI48_RS21135	0.79	+0.9
4,717,352	+		HGI48_RS21135	0.90	-0.7
4,717,352	+		HGI48_RS21135	0.90	-1.5
4,717,352	+		HGI48_RS21135	0.90	+0.6
4,717,353	-		HGI48_RS21135	0.90	-1.1
4,717,384	-				+0.8
4,717,384	-				+0.7
4,717,417	-				-0.2
4,717,417	-				+0.9
4,717,430	+				+2.0
4,717,430	+				+0.8
4,717,438	-				+1.8
4,717,444	-				+1.0
4,717,444	-				-0.4
4,717,444	-				+2.1
4,717,517	+		HGI48_RS21140	0.12	-0.7
4,717,517	+		HGI48_RS21140	0.12	-1.1
4,717,517	+		HGI48_RS21140	0.12	-1.1
4,717,517	+		HGI48_RS21140	0.12	-1.5
4,717,517	+		HGI48_RS21140	0.12	+1.5
4,717,517	+				-0.3
4,717,517	+		HGI48_RS21140	0.12	+1.3
4,717,517	+				+3.7
4,717,517	+				+1.3
4,717,518	-		HGI48_RS21140	0.12	-1.1
4,717,518	-		HGI48_RS21140	0.12	+0.8
4,717,518	-		HGI48_RS21140	0.12	-1.1
4,717,518	-		HGI48_RS21140	0.12	-1.5
4,717,518	-		HGI48_RS21140	0.12	-1.1
4,717,518	-		HGI48_RS21140	0.12	-2.8
4,717,519	+		HGI48_RS21140	0.12	-1.3
4,717,519	+		HGI48_RS21140	0.12	+0.5
4,717,520	-		HGI48_RS21140	0.12	-1.1
4,717,520	-		HGI48_RS21140	0.12	-0.7
4,717,520	-		HGI48_RS21140	0.12	+0.6
4,717,520	-				+2.0
4,717,520	-		HGI48_RS21140	0.12	+0.1
4,717,590	+		HGI48_RS21140	0.21	+0.9
4,717,590	+		HGI48_RS21140	0.21	-0.7
4,717,590	+		HGI48_RS21140	0.21	-1.5
4,717,591	-		HGI48_RS21140	0.21	-1.5
4,717,677	+		HGI48_RS21140	0.32	-1.1
4,717,753	-		HGI48_RS21140	0.42	-0.7
4,717,753	-		HGI48_RS21140	0.42	-1.3
4,717,868	+		HGI48_RS21140	0.56	-0.7
4,717,868	+		HGI48_RS21140	0.56	+0.9
4,717,868	+		HGI48_RS21140	0.56	-2.3
4,717,868	+		HGI48_RS21140	0.56	+1.1
4,717,868	+		HGI48_RS21140	0.56	+0.6
4,717,868	+		HGI48_RS21140	0.56	+0.1
4,717,868	+		HGI48_RS21140	0.56	-1.1
4,717,868	+		HGI48_RS21140	0.56	+1.5
4,717,868	+		HGI48_RS21140	0.56	+0.3
4,717,868	+		HGI48_RS21140	0.56	-1.1
4,717,868	+		HGI48_RS21140	0.56	+2.1
4,717,868	+		HGI48_RS21140	0.56	-1.5
4,717,868	+		HGI48_RS21140	0.56	+0.8
4,717,868	+		HGI48_RS21140	0.56	+0.3
4,717,868	+		HGI48_RS21140	0.56	-1.1
4,717,868	+		HGI48_RS21140	0.56	+1.4
4,717,868	+		HGI48_RS21140	0.56	-1.1
4,717,868	+		HGI48_RS21140	0.56	+2.7
4,717,868	+		HGI48_RS21140	0.56	+0.5
4,717,868	+		HGI48_RS21140	0.56	+1.5
4,717,868	+		HGI48_RS21140	0.56	-1.3
4,717,868	+		HGI48_RS21140	0.56	-0.7
4,717,869	-		HGI48_RS21140	0.56	+1.5
4,717,869	-		HGI48_RS21140	0.56	-3.1
4,717,869	-		HGI48_RS21140	0.56	+0.9
4,717,869	-		HGI48_RS21140	0.56	-1.3
4,717,869	-		HGI48_RS21140	0.56	-2.3
4,717,869	-		HGI48_RS21140	0.56	+0.3
4,717,869	-				-0.3
4,717,869	-		HGI48_RS21140	0.56	+1.6
4,717,869	-		HGI48_RS21140	0.56	+0.3
4,717,869	-		HGI48_RS21140	0.56	+1.7
4,717,869	-		HGI48_RS21140	0.56	-0.7
4,717,869	-		HGI48_RS21140	0.56	-1.5
4,717,869	-		HGI48_RS21140	0.56	+2.5
4,717,869	-		HGI48_RS21140	0.56	-0.1
4,717,869	-		HGI48_RS21140	0.56	+1.6
4,717,871	-				-0.3
4,717,871	-		HGI48_RS21140	0.56	-0.3
4,717,932	+		HGI48_RS21140	0.64	+0.3
4,717,933	-		HGI48_RS21140	0.64	-1.3
4,717,933	-		HGI48_RS21140	0.64	-1.1
4,717,941	+		HGI48_RS21140	0.65	+1.8
4,717,941	+		HGI48_RS21140	0.65	+0.5
4,717,942	-		HGI48_RS21140	0.65	-1.1
4,717,942	-		HGI48_RS21140	0.65	-0.0
4,717,942	-		HGI48_RS21140	0.65	-1.5
4,717,947	-				-0.3
4,718,130	+		HGI48_RS21140	0.89	-1.1
4,718,130	+				+0.3
4,718,130	+		HGI48_RS21140	0.89	-0.7
4,718,131	-		HGI48_RS21140	0.89	+0.3
4,718,131	-		HGI48_RS21140	0.89	+0.1
4,718,262	+				-1.0
4,718,305	-				-2.7
4,718,314	-		HGI48_RS21145	0.11	-1.3
4,718,376	-				+0.3
4,718,376	-		HGI48_RS21145	0.20	+1.0
4,718,376	-		HGI48_RS21145	0.20	-1.3
4,718,395	+		HGI48_RS21145	0.23	-1.3
4,718,472	+		HGI48_RS21145	0.35	+2.1
4,718,472	+		HGI48_RS21145	0.35	-2.1
4,718,473	-		HGI48_RS21145	0.35	-0.9
4,718,473	-		HGI48_RS21145	0.35	-1.1
4,718,473	-		HGI48_RS21145	0.35	-0.7
4,718,473	-		HGI48_RS21145	0.35	+2.6
4,718,558	-		HGI48_RS21145	0.48	+1.3
4,718,558	-		HGI48_RS21145	0.48	+0.0
4,718,609	+		HGI48_RS21145	0.56	+0.7
4,718,609	+		HGI48_RS21145	0.56	+1.8
4,718,609	+				-0.3
4,718,609	+		HGI48_RS21145	0.56	+1.0
4,718,610	-		HGI48_RS21145	0.56	-1.7
4,718,610	-		HGI48_RS21145	0.56	+0.8
4,718,610	-		HGI48_RS21145	0.56	-1.7
4,718,610	-				+1.3
4,718,610	-		HGI48_RS21145	0.56	+0.3
4,718,630	+		HGI48_RS21145	0.59	-1.9
4,718,630	+		HGI48_RS21145	0.59	-1.3
4,718,630	+		HGI48_RS21145	0.59	-3.9
4,718,631	-		HGI48_RS21145	0.60	-1.2
4,718,631	-		HGI48_RS21145	0.60	-0.2
4,718,631	-		HGI48_RS21145	0.60	-2.7
4,718,631	-		HGI48_RS21145	0.60	+0.9
4,718,631	-		HGI48_RS21145	0.60	+4.5
4,718,634	-		HGI48_RS21145	0.60	-0.2
4,718,687	+		HGI48_RS21145	0.68	-1.9
4,718,687	+		HGI48_RS21145	0.68	-3.4
4,718,688	-		HGI48_RS21145	0.68	+0.5
4,718,709	+		HGI48_RS21145	0.72	-2.4
4,718,742	-		HGI48_RS21145	0.77	-0.4
4,718,742	-		HGI48_RS21145	0.77	-0.5
4,718,789	+		HGI48_RS21145	0.84	+2.3
4,718,790	-		HGI48_RS21145	0.84	-1.3
4,718,790	-		HGI48_RS21145	0.84	+2.5
4,718,790	-		HGI48_RS21145	0.84	+1.2
4,718,888	+				+1.1
4,718,888	+				-0.1
4,718,888	+				-0.3
4,718,888	+				+1.0
4,718,888	+				+0.3
4,718,889	-				-1.9
4,718,889	-				-0.3
4,718,891	+				-1.5
4,718,891	+				-2.6
4,718,892	-				+1.8
4,718,892	-				-1.5
4,718,892	-				-1.4
4,718,892	-				-0.3
4,719,000	+		HGI48_RS21150	0.31	-1.3
4,719,289	+				-0.7
4,719,320	-				+0.9
4,719,416	+				-0.3
4,719,416	+				-0.1
4,719,417	-				-0.9
4,719,420	-				-1.3
4,719,420	-				+0.7
4,719,420	-				-1.1
4,719,431	-				+1.3
4,719,481	+				-3.7
4,719,517	+				-0.9
4,719,517	+				+0.6
4,719,517	+				-1.1
4,719,517	+				+1.7
4,719,517	+				-1.6
4,719,517	+				+0.6
4,719,518	-				-1.7
4,719,518	-				-2.4
4,719,518	-				+3.3
4,719,518	-				+2.0
4,719,518	-				-1.5
4,719,519	+				+0.3
4,719,519	+				-0.7
4,719,520	-				-1.7
4,719,520	-				+0.3
4,719,520	-				-1.9
4,719,621	+				-0.5
4,719,621	+				-0.7
4,719,621	+				-1.9
4,719,621	+				-0.3
4,719,621	+				+1.9
4,719,621	+				-1.5
4,719,621	+				-0.3
4,719,621	+				-1.1
4,719,621	+				-0.2
4,719,621	+				+0.2
4,719,621	+				-0.3
4,719,621	+				+1.5
4,719,622	-				+2.3
4,719,622	-				-0.7
4,719,622	-				-0.1
4,719,622	-				+0.8
4,719,622	-				+1.3
4,719,622	-				-0.3
4,719,622	-				-3.1
4,719,622	-				-0.7
4,719,623	+				-2.5
4,719,623	+				-0.3
4,719,624	-				+0.3
4,719,737	+		HGI48_RS21160	0.11	-3.1
4,719,737	+		HGI48_RS21160	0.11	-0.7
4,719,737	+		HGI48_RS21160	0.11	+0.3
4,719,737	+		HGI48_RS21160	0.11	-1.7
4,719,737	+		HGI48_RS21160	0.11	-1.0
4,719,738	-		HGI48_RS21160	0.11	+0.6
4,719,738	-		HGI48_RS21160	0.11	-2.2
4,719,738	-		HGI48_RS21160	0.11	-1.7
4,719,818	+		HGI48_RS21160	0.15	-1.3
4,719,818	+		HGI48_RS21160	0.15	-0.9
4,719,818	+		HGI48_RS21160	0.15	-0.7
4,719,818	+				+1.3
4,719,819	-		HGI48_RS21160	0.15	+0.8
4,719,819	-		HGI48_RS21160	0.15	-1.7
4,719,854	+		HGI48_RS21160	0.18	-0.2
4,719,854	+		HGI48_RS21160	0.18	-1.3
4,719,854	+		HGI48_RS21160	0.18	-0.9
4,719,855	-		HGI48_RS21160	0.18	-1.7
4,719,855	-		HGI48_RS21160	0.18	+0.9
4,719,855	-		HGI48_RS21160	0.18	-0.5