Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20990

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,685,144	-				-0.3
4,685,241	+				-1.5
4,685,241	+				-0.7
4,685,276	+				+3.7
4,685,285	-				+0.3
4,685,344	-				+1.7
4,685,344	-				+2.3
4,685,344	-				-1.3
4,685,344	-				-1.5
4,685,349	-				-2.9
4,685,349	-				-2.2
4,685,407	+				-1.3
4,685,438	+				+1.8
4,685,438	+				+1.2
4,685,438	+				+0.3
4,685,438	+				-1.1
4,685,438	+				+0.6
4,685,438	+				+1.7
4,685,438	+				+0.8
4,685,438	+				-1.6
4,685,438	+				+3.2
4,685,438	+				+0.5
4,685,439	-				+0.5
4,685,439	-				+0.5
4,685,439	-				-0.7
4,685,439	-				+1.7
4,685,439	-				+0.3
4,685,439	-				-2.2
4,685,439	-				+0.9
4,685,439	-				-1.1
4,685,439	-				+0.5
4,685,439	-				+0.6
4,685,439	-				-3.1
4,685,439	-				-0.6
4,685,439	-				-1.1
4,685,458	+				+1.0
4,685,458	+				+0.3
4,685,459	-				+1.0
4,685,459	-				+1.3
4,685,503	+				-0.3
4,685,503	+				-0.7
4,685,503	+				-3.1
4,685,503	+				-2.1
4,685,503	+				-1.7
4,685,504	-				+2.4
4,685,563	+				-0.3
4,685,563	+				-0.7
4,685,564	-				-2.1
4,685,564	-				-2.2
4,685,564	-				+0.0
4,685,564	-				+0.5
4,685,606	+		HGI48_RS20985	0.25	+0.1
4,685,607	-		HGI48_RS20985	0.25	+0.8
4,685,607	-		HGI48_RS20985	0.25	-1.1
4,685,647	+		HGI48_RS20985	0.48	+0.7
4,685,647	+		HGI48_RS20985	0.48	+0.3
4,685,647	+		HGI48_RS20985	0.48	+0.5
4,685,648	-		HGI48_RS20985	0.49	+0.0
4,685,648	-				+1.3
4,685,648	-		HGI48_RS20985	0.49	-0.7
4,685,648	-		HGI48_RS20985	0.49	+1.4
4,685,648	-		HGI48_RS20985	0.49	-1.9
4,685,660	+		HGI48_RS20985	0.55	+0.8
4,685,679	-		HGI48_RS20985	0.66	-1.9
4,685,679	-		HGI48_RS20985	0.66	+1.0
4,685,679	-		HGI48_RS20985	0.66	+2.3
4,685,679	-		HGI48_RS20985	0.66	+0.7
4,685,679	-		HGI48_RS20985	0.66	-1.5
4,685,682	+		HGI48_RS20985	0.68	+0.1
4,685,682	+		HGI48_RS20985	0.68	+2.3
4,685,682	+				+1.3
4,685,682	+		HGI48_RS20985	0.68	-1.3
4,685,682	+		HGI48_RS20985	0.68	-2.2
4,685,683	-		HGI48_RS20985	0.68	-1.3
4,685,683	-		HGI48_RS20985	0.68	+0.8
4,685,683	-		HGI48_RS20985	0.68	-0.9
4,685,683	-		HGI48_RS20985	0.68	+0.3
4,685,685	-		HGI48_RS20985	0.69	-2.1
4,685,756	-				+1.3
4,685,843	+				+0.8
4,685,869	+				-0.4
4,685,870	-				+3.0
4,685,911	+				-0.7
4,685,994	+				-1.3
4,685,994	+				+1.8
4,686,002	+				-0.3
4,686,003	-				-0.2
4,686,003	-				+2.0
4,686,027	+				+2.8
4,686,097	+				+1.3
4,686,097	+		HGI48_RS20990	0.31	-0.7
4,686,097	+		HGI48_RS20990	0.31	-2.2
4,686,097	+		HGI48_RS20990	0.31	-1.3
4,686,097	+		HGI48_RS20990	0.31	-2.1
4,686,097	+		HGI48_RS20990	0.31	-0.2
4,686,097	+		HGI48_RS20990	0.31	-2.7
4,686,098	-		HGI48_RS20990	0.32	-2.2
4,686,098	-		HGI48_RS20990	0.32	-1.7
4,686,098	-				+0.3
4,686,212	-		HGI48_RS20990	0.76	-1.7
4,686,212	-		HGI48_RS20990	0.76	+2.3
4,686,212	-				+0.3
4,686,223	+				+2.0
4,686,223	+		HGI48_RS20990	0.80	+0.5
4,686,223	+				-0.3
4,686,223	+		HGI48_RS20990	0.80	-1.5
4,686,223	+		HGI48_RS20990	0.80	-1.1
4,686,223	+		HGI48_RS20990	0.80	-2.6
4,686,224	-				-0.3
4,686,265	+				+1.3
4,686,265	+				+0.6
4,686,265	+				-1.5
4,686,266	-				+0.3
4,686,267	+				-0.2
4,686,267	+				-1.7
4,686,267	+				+1.0
4,686,268	-				+0.1
4,686,268	-				-2.1
4,686,268	-				-0.7
4,686,268	-				-1.5
4,686,268	-				-1.1
4,686,268	-				+0.5
4,686,271	+				+0.5
4,686,271	+				-1.1
4,686,271	+				-0.7
4,686,271	+				+2.6
4,686,271	+				-1.7
4,686,271	+				-1.3
4,686,271	+				+0.1
4,686,272	-				+0.5
4,686,272	-				-0.7
4,686,272	-				+0.3
4,686,272	-				-1.7
4,686,272	-				-2.1
4,686,272	-				+0.5
4,686,297	-				-0.2
4,686,297	-				+0.2
4,686,341	-				+2.6
4,686,366	+				-1.3
4,686,366	+				+1.6
4,686,366	+				-0.5
4,686,367	-				-0.2
4,686,367	-				-1.1
4,686,367	-				+2.4
4,686,367	-				+1.3
4,686,367	-				+0.7
4,686,367	-				+0.8
4,686,367	-				+2.5
4,686,370	+				+0.6
4,686,370	+				-0.3
4,686,371	-				-1.5
4,686,393	+				+1.7
4,686,393	+				-1.3
4,686,393	+				+2.4
4,686,394	-				+0.8
4,686,394	-				+0.6
4,686,394	-				+1.7
4,686,394	-				-2.2
4,686,513	+		HGI48_RS20995	0.21	-1.7
4,686,564	+		HGI48_RS20995	0.29	-2.1
4,686,565	-		HGI48_RS20995	0.29	+1.3
4,686,565	-		HGI48_RS20995	0.29	-0.7
4,686,584	+		HGI48_RS20995	0.31	+0.7
4,686,753	+		HGI48_RS20995	0.56	-2.1
4,686,843	+		HGI48_RS20995	0.69	+0.6
4,686,844	-		HGI48_RS20995	0.69	-2.1
4,686,844	-		HGI48_RS20995	0.69	+1.1
4,687,000	+				+2.8
4,687,000	+				-0.7
4,687,092	-				-2.2
4,687,094	-				+1.3
4,687,099	+				-0.7
4,687,099	+				+0.0
4,687,099	+				-0.7
4,687,099	+				-1.5
4,687,099	+				+1.8
4,687,099	+				+1.8
4,687,099	+				-1.1
4,687,099	+				-1.5
4,687,099	+				+0.4
4,687,099	+				+1.0
4,687,100	-				-2.4
4,687,100	-				-1.7
4,687,100	-				-2.5
4,687,100	-				+0.7
4,687,100	-				-2.2
4,687,100	-				+0.4
4,687,106	+				-1.3
4,687,106	+				+0.3
4,687,107	-				+2.5
4,687,112	+				+1.8
4,687,114	+				-2.2
4,687,114	+				-2.2
4,687,114	+				-1.7
4,687,114	+				-2.5
4,687,114	+				+2.1
4,687,114	+				-2.4
4,687,114	+				+1.2
4,687,114	+				-1.3
4,687,114	+				+0.4
4,687,114	+				+2.1
4,687,114	+				+1.5
4,687,114	+				-0.7
4,687,114	+				+0.8
4,687,114	+				-0.3
4,687,114	+				-1.5
4,687,114	+				-1.9
4,687,114	+				-1.1
4,687,115	-				+0.3
4,687,115	-				+1.3
4,687,115	-				-0.2
4,687,115	-				-1.7
4,687,115	-				-0.2
4,687,115	-				-1.7
4,687,115	-				+0.9
4,687,115	-				+0.3
4,687,115	-				+0.6
4,687,115	-				-1.7
4,687,123	+				+2.0
4,687,123	+				+1.9
4,687,124	-				-0.7
4,687,142	+				-0.5
4,687,143	-				+0.3
4,687,143	-				+0.5
4,687,171	-				-2.3
4,687,171	-				-2.1
4,687,231	+				-0.7
4,687,232	-				+1.2
4,687,232	-				+0.5
4,687,263	+				+1.0