Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19950

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,458,505	+				+1.3
4,458,515	-				-1.1
4,458,559	+				-0.7
4,458,559	+				+0.3
4,458,559	+				-1.5
4,458,560	-				+2.3
4,458,563	-				+0.3
4,458,563	-				-0.7
4,458,579	+				+0.5
4,458,580	-				+1.8
4,458,580	-				-1.3
4,458,580	-				-0.7
4,458,582	+				-1.5
4,458,583	-				-0.6
4,458,583	-				-1.5
4,458,592	-				-0.5
4,458,610	+				+0.3
4,458,610	+				+1.9
4,458,610	+				+0.3
4,458,611	-				+1.2
4,458,611	-				+1.1
4,458,612	+				+0.8
4,458,708	-				+0.3
4,458,732	+		HGI48_RS19945	0.19	+0.3
4,458,732	+		HGI48_RS19945	0.19	-1.1
4,458,733	-		HGI48_RS19945	0.19	+0.3
4,458,738	+		HGI48_RS19945	0.19	-1.5
4,458,739	-		HGI48_RS19945	0.19	-1.1
4,458,739	-		HGI48_RS19945	0.19	-0.7
4,458,739	-		HGI48_RS19945	0.19	-1.1
4,458,753	+		HGI48_RS19945	0.21	+0.1
4,458,753	+		HGI48_RS19945	0.21	-1.7
4,458,753	+		HGI48_RS19945	0.21	-1.1
4,458,753	+		HGI48_RS19945	0.21	+0.9
4,458,753	+		HGI48_RS19945	0.21	+1.6
4,458,753	+		HGI48_RS19945	0.21	-2.1
4,458,754	-		HGI48_RS19945	0.21	-2.2
4,458,757	+		HGI48_RS19945	0.22	-1.4
4,458,757	+				+1.3
4,458,757	+		HGI48_RS19945	0.22	+1.3
4,458,766	+		HGI48_RS19945	0.23	-0.7
4,458,766	+		HGI48_RS19945	0.23	+0.5
4,458,766	+		HGI48_RS19945	0.23	+1.0
4,458,767	-		HGI48_RS19945	0.23	+1.0
4,458,767	-		HGI48_RS19945	0.23	+1.3
4,458,767	-		HGI48_RS19945	0.23	-0.8
4,458,767	-		HGI48_RS19945	0.23	+1.4
4,458,767	-		HGI48_RS19945	0.23	+0.2
4,458,768	+		HGI48_RS19945	0.23	-2.6
4,458,768	+		HGI48_RS19945	0.23	-1.3
4,458,768	+		HGI48_RS19945	0.23	+1.7
4,458,768	+		HGI48_RS19945	0.23	-2.6
4,458,769	-		HGI48_RS19945	0.23	-0.0
4,458,769	-				+3.6
4,458,769	-		HGI48_RS19945	0.23	-1.7
4,458,769	-		HGI48_RS19945	0.23	+0.3
4,458,769	-		HGI48_RS19945	0.23	-1.5
4,458,769	-		HGI48_RS19945	0.23	-1.1
4,458,844	-		HGI48_RS19945	0.32	+1.8
4,458,844	-		HGI48_RS19945	0.32	+2.1
4,458,844	-				+0.7
4,458,891	+		HGI48_RS19945	0.38	-3.2
4,458,902	+		HGI48_RS19945	0.40	+2.2
4,458,970	+		HGI48_RS19945	0.48	-1.5
4,458,970	+		HGI48_RS19945	0.48	+0.3
4,458,970	+		HGI48_RS19945	0.48	+1.3
4,458,970	+		HGI48_RS19945	0.48	+1.5
4,458,970	+		HGI48_RS19945	0.48	+1.0
4,458,970	+		HGI48_RS19945	0.48	+0.0
4,458,970	+		HGI48_RS19945	0.48	-2.4
4,458,970	+		HGI48_RS19945	0.48	-0.2
4,458,970	+				-0.3
4,458,970	+		HGI48_RS19945	0.48	-0.2
4,458,970	+		HGI48_RS19945	0.48	+1.3
4,458,970	+				+1.3
4,458,970	+		HGI48_RS19945	0.48	-1.9
4,458,971	-		HGI48_RS19945	0.48	+0.5
4,458,971	-		HGI48_RS19945	0.48	-0.9
4,458,971	-		HGI48_RS19945	0.48	-0.5
4,458,971	-				-0.3
4,458,971	-		HGI48_RS19945	0.48	+0.2
4,458,971	-		HGI48_RS19945	0.48	-0.7
4,458,971	-		HGI48_RS19945	0.48	-0.3
4,458,971	-		HGI48_RS19945	0.48	+1.1
4,458,971	-		HGI48_RS19945	0.48	-2.7
4,458,971	-		HGI48_RS19945	0.48	+0.7
4,458,971	-		HGI48_RS19945	0.48	+0.8
4,458,971	-		HGI48_RS19945	0.48	-1.3
4,458,971	-		HGI48_RS19945	0.48	-1.9
4,458,971	-		HGI48_RS19945	0.48	-2.1
4,458,971	-		HGI48_RS19945	0.48	-1.5
4,458,971	-		HGI48_RS19945	0.48	-0.7
4,458,971	-		HGI48_RS19945	0.48	+0.8
4,458,972	+				-0.3
4,458,972	+		HGI48_RS19945	0.48	+2.6
4,458,972	+		HGI48_RS19945	0.48	-0.5
4,458,972	+		HGI48_RS19945	0.48	+1.1
4,458,972	+				+1.3
4,458,973	-				+2.8
4,459,003	-		HGI48_RS19945	0.52	+0.5
4,459,014	-				+0.3
4,459,049	-				+2.0
4,459,119	+		HGI48_RS19945	0.67	-1.1
4,459,120	-		HGI48_RS19945	0.67	-1.1
4,459,120	-		HGI48_RS19945	0.67	-1.3
4,459,120	-				+1.3
4,459,120	-		HGI48_RS19945	0.67	+0.5
4,459,120	-		HGI48_RS19945	0.67	-1.1
4,459,207	-		HGI48_RS19945	0.78	-1.1
4,459,207	-		HGI48_RS19945	0.78	-1.1
4,459,207	-		HGI48_RS19945	0.78	-0.4
4,459,228	+		HGI48_RS19945	0.80	-2.6
4,459,228	+		HGI48_RS19945	0.80	-0.5
4,459,228	+		HGI48_RS19945	0.80	+2.4
4,459,228	+		HGI48_RS19945	0.80	+1.8
4,459,228	+		HGI48_RS19945	0.80	+0.1
4,459,229	-				+0.7
4,459,229	-		HGI48_RS19945	0.80	-1.7
4,459,229	-				-0.3
4,459,229	-		HGI48_RS19945	0.80	-0.7
4,459,311	+				-1.1
4,459,311	+				+2.1
4,459,384	+				+0.8
4,459,384	+				-1.9
4,459,384	+				-1.9
4,459,384	+				-1.1
4,459,384	+				+0.9
4,459,385	-				+1.7
4,459,550	-		HGI48_RS19950	0.12	-0.8
4,459,594	+		HGI48_RS19950	0.18	+0.3
4,459,858	-		HGI48_RS19950	0.56	-0.7
4,459,968	+		HGI48_RS19950	0.71	+1.3
4,459,968	+		HGI48_RS19950	0.71	-1.0
4,459,968	+		HGI48_RS19950	0.71	-1.7
4,459,968	+				+2.0
4,459,968	+		HGI48_RS19950	0.71	-2.1
4,459,968	+		HGI48_RS19950	0.71	-0.5
4,459,968	+		HGI48_RS19950	0.71	+1.3
4,459,968	+				-0.3
4,459,969	-		HGI48_RS19950	0.72	-1.1
4,459,969	-		HGI48_RS19950	0.72	-1.1
4,459,969	-		HGI48_RS19950	0.72	+0.7
4,459,969	-		HGI48_RS19950	0.72	+1.3
4,459,969	-		HGI48_RS19950	0.72	+0.7
4,459,969	-		HGI48_RS19950	0.72	+2.3
4,459,969	-		HGI48_RS19950	0.72	-1.5
4,459,969	-		HGI48_RS19950	0.72	+0.9
4,459,969	-		HGI48_RS19950	0.72	-0.7
4,459,969	-		HGI48_RS19950	0.72	+1.9
4,459,969	-		HGI48_RS19950	0.72	-1.9
4,459,969	-		HGI48_RS19950	0.72	+1.6
4,460,079	+		HGI48_RS19950	0.87	+0.8
4,460,079	+				-0.3
4,460,101	+				-0.7
4,460,128	+				-0.0
4,460,128	+				+0.7
4,460,128	+				-2.4
4,460,129	-				-1.0
4,460,129	-				-1.5
4,460,156	+				-1.7
4,460,157	-				+0.4
4,460,160	+				-1.7
4,460,161	-				+0.4
4,460,161	-				+1.3
4,460,161	-				-1.5
4,460,161	-				-1.5
4,460,197	+				+2.0
4,460,198	-				-1.1
4,460,198	-				+0.6
4,460,198	-				-0.7
4,460,214	+				+2.5
4,460,214	+				+0.5
4,460,214	+				-1.3
4,460,215	-				+0.2
4,460,425	-				-0.1
4,460,428	+				-0.3
4,460,428	+				+0.5
4,460,428	+				-3.5
4,460,428	+				+2.0
4,460,428	+				+0.3
4,460,428	+				+0.3
4,460,428	+				-2.1
4,460,428	+				+3.2
4,460,429	-				+0.3
4,460,429	-				+0.2
4,460,429	-				+2.3
4,460,431	+				-1.9
4,460,551	+		HGI48_RS19955	0.57	-1.3
4,460,631	-				+1.4
4,460,634	+				-2.2
4,460,635	-				-0.3
4,460,680	-				-1.3
4,460,683	+				-0.7
4,460,683	+				-1.9
4,460,683	+				-0.3
4,460,683	+				+1.4
4,460,683	+				+0.0
4,460,684	-				+1.1
4,460,684	-				+0.5
4,460,687	-				-0.9
4,460,757	+				-0.6
4,460,758	-				+0.6
4,460,780	+				-0.3
4,460,781	-				-0.7
4,460,785	+				+2.3
4,460,785	+				-1.3
4,460,786	-				-3.0
4,460,786	-				-0.7
4,460,786	-				+0.7
4,460,786	-				+1.7
4,460,786	-				-1.7
4,460,786	-				-2.5
4,460,786	-				-1.1
4,460,891	+		HGI48_RS19960	0.11	-1.9
4,460,923	-		HGI48_RS19960	0.14	+1.9
4,460,923	-		HGI48_RS19960	0.14	-0.3
4,460,923	-		HGI48_RS19960	0.14	+0.8
4,460,923	-		HGI48_RS19960	0.14	+1.5
4,460,943	+		HGI48_RS19960	0.16	+0.0
4,460,943	+				+0.3
4,460,943	+		HGI48_RS19960	0.16	-1.2
4,460,944	-		HGI48_RS19960	0.16	-1.1
4,460,944	-		HGI48_RS19960	0.16	+2.5
4,460,944	-		HGI48_RS19960	0.16	-1.1
4,460,944	-		HGI48_RS19960	0.16	+0.9
4,460,944	-		HGI48_RS19960	0.16	-1.1
4,460,944	-		HGI48_RS19960	0.16	+0.2
4,460,944	-		HGI48_RS19960	0.16	-1.5
4,461,022	+		HGI48_RS19960	0.22	+0.0
4,461,024	+		HGI48_RS19960	0.22	-1.7
4,461,024	+		HGI48_RS19960	0.22	-2.1
4,461,024	+		HGI48_RS19960	0.22	-1.1
4,461,025	-		HGI48_RS19960	0.22	-0.7
4,461,025	-		HGI48_RS19960	0.22	+1.1
4,461,025	-		HGI48_RS19960	0.22	+1.3
4,461,041	-		HGI48_RS19960	0.24	-1.3
4,461,041	-		HGI48_RS19960	0.24	+1.3
4,461,067	-		HGI48_RS19960	0.26	-2.9
4,461,067	-		HGI48_RS19960	0.26	-0.2
4,461,067	-		HGI48_RS19960	0.26	-2.4
4,461,126	+		HGI48_RS19960	0.31	-2.8