Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18760

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,205,888	+		HGI48_RS18755	0.33	+0.4
4,205,921	+		HGI48_RS18755	0.36	-0.8
4,205,921	+		HGI48_RS18755	0.36	-1.6
4,205,922	-		HGI48_RS18755	0.36	+0.9
4,205,922	-		HGI48_RS18755	0.36	+2.2
4,205,922	-		HGI48_RS18755	0.36	+0.3
4,205,922	-				+2.4
4,205,954	+		HGI48_RS18755	0.38	+1.9
4,205,954	+				+3.0
4,205,954	+		HGI48_RS18755	0.38	+0.1
4,205,954	+		HGI48_RS18755	0.38	+0.8
4,205,954	+		HGI48_RS18755	0.38	+2.9
4,205,954	+		HGI48_RS18755	0.38	+0.1
4,205,954	+		HGI48_RS18755	0.38	-0.4
4,205,954	+		HGI48_RS18755	0.38	+1.3
4,205,955	-		HGI48_RS18755	0.38	+0.1
4,205,955	-		HGI48_RS18755	0.38	-0.8
4,205,955	-		HGI48_RS18755	0.38	-3.4
4,205,955	-		HGI48_RS18755	0.38	-1.1
4,205,955	-		HGI48_RS18755	0.38	+2.4
4,205,955	-		HGI48_RS18755	0.38	-1.6
4,205,955	-		HGI48_RS18755	0.38	-1.1
4,206,041	+		HGI48_RS18755	0.44	+0.4
4,206,041	+		HGI48_RS18755	0.44	-2.0
4,206,041	+		HGI48_RS18755	0.44	+0.2
4,206,041	+		HGI48_RS18755	0.44	-2.3
4,206,041	+		HGI48_RS18755	0.44	+0.4
4,206,041	+		HGI48_RS18755	0.44	-1.4
4,206,041	+		HGI48_RS18755	0.44	+1.3
4,206,042	-		HGI48_RS18755	0.44	-2.0
4,206,042	-		HGI48_RS18755	0.44	-1.1
4,206,042	-		HGI48_RS18755	0.44	-1.6
4,206,042	-		HGI48_RS18755	0.44	+1.0
4,206,042	-		HGI48_RS18755	0.44	-1.6
4,206,042	-		HGI48_RS18755	0.44	-1.1
4,206,083	+		HGI48_RS18755	0.47	+0.8
4,206,083	+		HGI48_RS18755	0.47	-1.6
4,206,083	+		HGI48_RS18755	0.47	+2.2
4,206,084	-		HGI48_RS18755	0.47	+0.4
4,206,084	-		HGI48_RS18755	0.47	-1.1
4,206,084	-		HGI48_RS18755	0.47	+2.2
4,206,084	-		HGI48_RS18755	0.47	-1.1
4,206,084	-		HGI48_RS18755	0.47	-1.1
4,206,084	-		HGI48_RS18755	0.47	-1.1
4,206,084	-		HGI48_RS18755	0.47	-0.3
4,206,084	-		HGI48_RS18755	0.47	+0.7
4,206,147	-		HGI48_RS18755	0.51	+0.6
4,206,147	-				+2.2
4,206,431	+		HGI48_RS18755	0.71	+1.9
4,206,431	+		HGI48_RS18755	0.71	+1.7
4,206,431	+		HGI48_RS18755	0.71	-0.9
4,206,432	-		HGI48_RS18755	0.71	-0.7
4,206,740	+				+1.2
4,206,741	-				+1.2
4,206,777	+				-1.1
4,206,777	+				-0.1
4,206,777	+				+0.2
4,206,778	-				-0.4
4,206,778	-				+2.0
4,206,778	-				-1.8
4,207,031	-		HGI48_RS18760	0.14	+0.2
4,207,031	-		HGI48_RS18760	0.14	+0.9
4,207,031	-		HGI48_RS18760	0.14	-2.1
4,207,031	-		HGI48_RS18760	0.14	+4.5
4,207,031	-		HGI48_RS18760	0.14	-2.0
4,207,031	-		HGI48_RS18760	0.14	+0.3
4,207,123	-		HGI48_RS18760	0.21	+1.2
4,207,231	+		HGI48_RS18760	0.29	-2.9
4,207,231	+		HGI48_RS18760	0.29	-0.8
4,207,231	+		HGI48_RS18760	0.29	-1.6
4,207,232	-		HGI48_RS18760	0.29	-2.1
4,207,235	+		HGI48_RS18760	0.29	+1.3
4,207,235	+		HGI48_RS18760	0.29	-1.4
4,207,235	+		HGI48_RS18760	0.29	-1.6
4,207,235	+		HGI48_RS18760	0.29	-1.0
4,207,235	+		HGI48_RS18760	0.29	-0.0
4,207,235	+		HGI48_RS18760	0.29	+0.4
4,207,236	-		HGI48_RS18760	0.29	-1.6
4,207,236	-		HGI48_RS18760	0.29	+0.5
4,207,236	-		HGI48_RS18760	0.29	-0.8
4,207,236	-		HGI48_RS18760	0.29	-0.8
4,207,236	-		HGI48_RS18760	0.29	+0.1
4,207,236	-		HGI48_RS18760	0.29	-1.4
4,207,236	-		HGI48_RS18760	0.29	+1.7
4,207,236	-		HGI48_RS18760	0.29	-1.1
4,207,377	+		HGI48_RS18760	0.40	-0.4
4,207,377	+		HGI48_RS18760	0.40	-2.0
4,207,377	+		HGI48_RS18760	0.40	+0.8
4,207,378	-		HGI48_RS18760	0.40	-2.6
4,207,378	-		HGI48_RS18760	0.40	-0.0
4,207,558	+		HGI48_RS18760	0.54	-1.8
4,207,559	-				+0.2
4,207,799	+				-0.4
4,207,897	+		HGI48_RS18760	0.80	-0.3
4,207,897	+		HGI48_RS18760	0.80	-1.1
4,207,897	+				-0.4
4,207,898	-				+0.6
4,208,093	-				+0.2
4,208,096	+				-1.5
4,208,097	-				-1.8
4,208,164	+				-1.4
4,208,164	+				-1.1
4,208,183	+				+0.5
4,208,184	-				-0.8
4,208,184	-				-1.4
4,208,184	-				-0.6
4,208,243	-				-0.8
4,208,279	+				-2.4
4,208,279	+				-1.6
4,208,357	+				-1.6
4,208,357	+				-2.9
4,208,358	-				+1.4
4,208,358	-				-1.6
4,208,358	-				+2.9
4,208,384	+				-3.0
4,208,384	+				-1.5
4,208,384	+				+1.2
4,208,385	-				+0.6
4,208,385	-				+1.0
4,208,461	-		HGI48_RS18765	0.13	+0.0
4,208,545	+		HGI48_RS18765	0.22	-2.0
4,208,546	-		HGI48_RS18765	0.23	-1.3
4,208,546	-		HGI48_RS18765	0.23	-0.0
4,208,704	+				+2.8
4,208,793	+		HGI48_RS18765	0.50	-1.6
4,208,793	+				+3.2
4,208,793	+		HGI48_RS18765	0.50	+1.0
4,208,793	+		HGI48_RS18765	0.50	-0.6
4,208,793	+		HGI48_RS18765	0.50	-2.0
4,208,794	-		HGI48_RS18765	0.50	-1.2
4,208,794	-		HGI48_RS18765	0.50	-2.1
4,208,794	-		HGI48_RS18765	0.50	-0.8
4,208,794	-		HGI48_RS18765	0.50	-1.4
4,208,797	+		HGI48_RS18765	0.51	-1.4
4,208,797	+		HGI48_RS18765	0.51	-1.1
4,208,798	-				-0.4
4,208,798	-		HGI48_RS18765	0.51	+0.9
4,208,798	-				+0.2
4,208,798	-		HGI48_RS18765	0.51	+2.0
4,208,813	-		HGI48_RS18765	0.52	+1.9
4,208,813	-		HGI48_RS18765	0.52	-2.5
4,208,828	+		HGI48_RS18765	0.54	-0.4
4,208,829	-		HGI48_RS18765	0.54	+1.2
4,208,854	+		HGI48_RS18765	0.57	-0.3
4,208,855	-				-0.4
4,208,855	-		HGI48_RS18765	0.57	+1.7
4,208,921	-		HGI48_RS18765	0.64	-1.8
4,208,921	-		HGI48_RS18765	0.64	-1.8
4,208,956	+		HGI48_RS18765	0.68	+1.3
4,208,956	+		HGI48_RS18765	0.68	+0.8
4,208,956	+		HGI48_RS18765	0.68	-0.4
4,208,956	+		HGI48_RS18765	0.68	-2.1
4,208,956	+		HGI48_RS18765	0.68	-2.3
4,208,956	+				-0.4
4,208,957	-		HGI48_RS18765	0.68	-1.4
4,208,957	-		HGI48_RS18765	0.68	-0.1
4,208,957	-		HGI48_RS18765	0.68	+0.7
4,208,957	-				-0.4
4,208,957	-		HGI48_RS18765	0.68	-2.6
4,208,957	-		HGI48_RS18765	0.68	+1.5
4,208,957	-		HGI48_RS18765	0.68	+0.7
4,208,957	-		HGI48_RS18765	0.68	-1.4
4,208,957	-		HGI48_RS18765	0.68	+1.2
4,208,957	-		HGI48_RS18765	0.68	+0.9
4,208,957	-				+1.2
4,209,069	+		HGI48_RS18765	0.81	-1.1