Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18700

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,193,081	-				+1.4
4,193,081	-				+0.6
4,193,081	-				-0.1
4,193,163	-				-0.4
4,193,192	+				-1.1
4,193,192	+				-1.4
4,193,193	-				-2.0
4,193,200	+				-0.4
4,193,247	-				-0.6
4,193,297	+				+0.9
4,193,298	-				-0.4
4,193,298	-				+2.1
4,193,298	-				-2.1
4,193,308	+				-3.3
4,193,308	+				+3.4
4,193,308	+				-1.1
4,193,309	-				+1.6
4,193,311	+				+0.5
4,193,348	+				+1.6
4,193,349	-				+3.2
4,193,399	+				+0.8
4,193,408	+				+1.2
4,193,408	+				+0.3
4,193,414	+				+0.9
4,193,414	+				-1.8
4,193,414	+				-0.8
4,193,414	+				+0.3
4,193,414	+				-1.4
4,193,414	+				-0.8
4,193,414	+				+0.9
4,193,415	-				-2.5
4,193,415	-				-3.1
4,193,415	-				+0.6
4,193,415	-				-0.2
4,193,415	-				+1.7
4,193,416	+				-0.5
4,193,416	+				-1.4
4,193,416	+				+0.7
4,193,416	+				-3.4
4,193,417	-				+1.5
4,193,417	-				-2.1
4,193,417	-				+0.2
4,193,446	+				+0.5
4,193,446	+				-1.1
4,193,447	-				-0.4
4,193,447	-				+0.2
4,193,447	-				-1.8
4,193,447	-				+0.6
4,193,545	+		HGI48_RS18695	0.21	-1.3
4,193,545	+		HGI48_RS18695	0.21	-2.5
4,193,546	-				-0.4
4,193,676	+		HGI48_RS18695	0.41	+0.9
4,193,676	+				+0.2
4,193,677	-		HGI48_RS18695	0.41	-2.4
4,193,677	-		HGI48_RS18695	0.41	-2.8
4,193,700	+		HGI48_RS18695	0.44	+1.3
4,193,721	-				-0.4
4,193,833	+		HGI48_RS18695	0.64	+2.0
4,193,833	+		HGI48_RS18695	0.64	-1.8
4,193,833	+		HGI48_RS18695	0.64	-0.1
4,193,833	+		HGI48_RS18695	0.64	+1.5
4,193,834	-				+3.3
4,193,834	-		HGI48_RS18695	0.64	-1.4
4,193,852	-		HGI48_RS18695	0.67	+1.9
4,193,896	-				-0.4
4,194,138	+				+1.0
4,194,139	-				+0.2
4,194,171	-		HGI48_RS18700	0.12	+2.2
4,194,171	-		HGI48_RS18700	0.12	-0.3
4,194,171	-		HGI48_RS18700	0.12	+0.6
4,194,295	+		HGI48_RS18700	0.24	-2.3
4,194,295	+		HGI48_RS18700	0.24	-1.6
4,194,296	-		HGI48_RS18700	0.24	-0.1
4,194,323	+		HGI48_RS18700	0.27	-2.0
4,194,324	-		HGI48_RS18700	0.27	-0.9
4,194,324	-		HGI48_RS18700	0.27	+0.3
4,194,324	-		HGI48_RS18700	0.27	+0.8
4,194,324	-		HGI48_RS18700	0.27	-1.6
4,194,324	-				+0.6
4,194,332	+		HGI48_RS18700	0.28	+0.3
4,194,332	+		HGI48_RS18700	0.28	+1.3
4,194,332	+		HGI48_RS18700	0.28	+0.2
4,194,332	+				-0.4
4,194,332	+		HGI48_RS18700	0.28	+2.3
4,194,332	+		HGI48_RS18700	0.28	-1.6
4,194,332	+		HGI48_RS18700	0.28	-2.0
4,194,333	-		HGI48_RS18700	0.28	-1.1
4,194,333	-				+2.2
4,194,333	-		HGI48_RS18700	0.28	-0.8
4,194,333	-		HGI48_RS18700	0.28	+1.4
4,194,333	-		HGI48_RS18700	0.28	-3.2
4,194,333	-		HGI48_RS18700	0.28	-1.1
4,194,333	-		HGI48_RS18700	0.28	-1.8
4,194,333	-				+0.2
4,194,336	+		HGI48_RS18700	0.28	-2.5
4,194,336	+		HGI48_RS18700	0.28	+0.1
4,194,336	+		HGI48_RS18700	0.28	-3.3
4,194,336	+		HGI48_RS18700	0.28	+0.2
4,194,336	+		HGI48_RS18700	0.28	-1.1
4,194,337	-		HGI48_RS18700	0.28	+0.9
4,194,338	+		HGI48_RS18700	0.29	+2.2
4,194,339	-		HGI48_RS18700	0.29	-2.4
4,194,339	-		HGI48_RS18700	0.29	-0.8
4,194,339	-		HGI48_RS18700	0.29	-1.4
4,194,795	+		HGI48_RS18700	0.74	-0.4
4,194,796	-		HGI48_RS18700	0.74	-1.4
4,194,796	-		HGI48_RS18700	0.74	-1.6
4,194,796	-		HGI48_RS18700	0.74	-2.0
4,194,796	-		HGI48_RS18700	0.74	-0.3
4,194,798	-		HGI48_RS18700	0.74	-0.1
4,194,798	-		HGI48_RS18700	0.74	+0.3
4,194,798	-		HGI48_RS18700	0.74	-2.1
4,194,806	+		HGI48_RS18700	0.75	+2.3
4,194,807	-		HGI48_RS18700	0.75	+0.9
4,194,814	+		HGI48_RS18700	0.76	+0.8
4,194,814	+		HGI48_RS18700	0.76	-1.4
4,194,814	+		HGI48_RS18700	0.76	-1.8
4,194,815	-				+2.2
4,194,815	-		HGI48_RS18700	0.76	-1.8
4,194,815	-		HGI48_RS18700	0.76	+1.8
4,195,046	+				-2.3
4,195,053	+				+0.8
4,195,053	+				+2.6
4,195,054	-				-2.3
4,195,055	+				+2.5
4,195,055	+				-0.9
4,195,055	+				+1.9
4,195,055	+				-1.4
4,195,055	+				+0.2
4,195,055	+				-1.1
4,195,055	+				-1.6
4,195,056	-				-1.3
4,195,121	-				-1.8
4,195,128	+				-0.8
4,195,136	+				+1.9
4,195,140	-				-2.3
4,195,140	-				+1.8
4,195,200	-				+0.2
4,195,212	+				+1.4
4,195,212	+				+1.5
4,195,213	-				+2.8
4,195,213	-				+0.1
4,195,213	-				-2.9
4,195,213	-				+1.2
4,195,214	+				+1.0
4,195,215	-				-1.8
4,195,215	-				-0.0
4,195,215	-				-0.2
4,195,216	+				-0.4
4,195,216	+				-2.3
4,195,216	+				+0.2
4,195,217	-				-0.5
4,195,217	-				-1.4
4,195,217	-				-2.4
4,195,217	-				-0.5
4,195,217	-				+0.4
4,195,217	-				-1.6
4,195,229	+				-1.0
4,195,230	-				+1.2
4,195,356	+				-0.2
4,195,356	+				-1.1
4,195,356	+				-2.0
4,195,357	-				+0.4
4,195,357	-				-2.0
4,195,380	-				+2.4
4,195,421	+				+1.6
4,195,422	-				+2.0
4,195,422	-				+1.4
4,195,484	+				-0.3
4,195,491	+				-1.8
4,195,492	-				+1.6
4,195,741	+				+0.2
4,195,741	+		HGI48_RS18705	0.11	+0.4
4,195,741	+		HGI48_RS18705	0.11	-0.8
4,195,742	-		HGI48_RS18705	0.11	+2.3
4,195,742	-				+1.2
4,195,742	-				+0.2
4,195,859	-		HGI48_RS18705	0.20	-1.4
4,195,859	-		HGI48_RS18705	0.20	+1.0
4,195,859	-		HGI48_RS18705	0.20	-0.8
4,195,859	-		HGI48_RS18705	0.20	-0.8
4,195,859	-		HGI48_RS18705	0.20	+0.7
4,196,034	-		HGI48_RS18705	0.34	+1.2