Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16420

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,677,824	+		HGI48_RS16415	0.40	+1.3
3,677,824	+		HGI48_RS16415	0.40	-0.5
3,677,825	-		HGI48_RS16415	0.40	+1.3
3,677,825	-		HGI48_RS16415	0.40	-1.2
3,677,831	+		HGI48_RS16415	0.40	+1.6
3,677,866	+		HGI48_RS16415	0.44	+1.4
3,677,866	+		HGI48_RS16415	0.44	+1.4
3,677,867	-		HGI48_RS16415	0.44	-2.7
3,677,867	-		HGI48_RS16415	0.44	+1.8
3,678,070	+		HGI48_RS16415	0.64	-2.4
3,678,071	-		HGI48_RS16415	0.64	-0.5
3,678,071	-		HGI48_RS16415	0.64	-2.6
3,678,071	-		HGI48_RS16415	0.64	+0.1
3,678,121	+		HGI48_RS16415	0.69	+1.2
3,678,121	+		HGI48_RS16415	0.69	+1.7
3,678,121	+		HGI48_RS16415	0.69	+1.4
3,678,122	-		HGI48_RS16415	0.70	-1.6
3,678,122	-		HGI48_RS16415	0.70	-0.2
3,678,122	-		HGI48_RS16415	0.70	+1.8
3,678,122	-		HGI48_RS16415	0.70	+0.5
3,678,122	-		HGI48_RS16415	0.70	-0.4
3,678,122	-		HGI48_RS16415	0.70	-1.0
3,678,231	+		HGI48_RS16415	0.81	+1.3
3,678,237	-		HGI48_RS16415	0.81	-1.6
3,678,271	+		HGI48_RS16415	0.85	+0.3
3,678,271	+				+4.5
3,678,271	+		HGI48_RS16415	0.85	+1.3
3,678,272	-		HGI48_RS16415	0.85	+0.3
3,678,272	-		HGI48_RS16415	0.85	-1.0
3,678,272	-				-0.6
3,678,276	+		HGI48_RS16415	0.85	-1.0
3,678,276	+		HGI48_RS16415	0.85	+1.2
3,678,276	+		HGI48_RS16415	0.85	-1.0
3,678,276	+		HGI48_RS16415	0.85	-0.1
3,678,276	+		HGI48_RS16415	0.85	-2.0
3,678,277	-		HGI48_RS16415	0.85	-0.2
3,678,277	-				+3.0
3,678,277	-		HGI48_RS16415	0.85	-1.6
3,678,294	-		HGI48_RS16415	0.87	-2.4
3,678,294	-		HGI48_RS16415	0.87	-1.9
3,678,294	-		HGI48_RS16415	0.87	+0.5
3,678,332	+				+0.2
3,678,332	+				+2.3
3,678,332	+				+0.6
3,678,332	+				-1.6
3,678,333	-				+2.4
3,678,333	-				+1.8
3,678,333	-				-2.6
3,678,333	-				+1.7
3,678,452	+				+1.2
3,678,452	+				-4.3
3,678,452	+				-1.0
3,678,452	+				-1.7
3,678,453	-				-0.4
3,678,486	-				-1.6
3,678,522	+				-0.0
3,678,571	+				-0.0
3,678,572	-				-2.9
3,678,577	+				+0.4
3,678,577	+				-0.6
3,678,620	+				+1.8
3,678,681	+				-0.6
3,678,697	-				-0.7
3,678,697	-				-1.4
3,678,697	-				+1.0
3,678,782	-				-1.2
3,678,797	+				-1.6
3,678,797	+				-0.2
3,678,798	-				-0.0
3,678,798	-				+0.3
3,678,798	-				+1.5
3,678,798	-				-0.0
3,678,841	+				-1.0
3,678,850	+				-2.2
3,678,851	-				-0.6
3,678,851	-				+1.0
3,678,851	-				-0.6
3,678,851	-				-1.9
3,678,851	-				+1.0
3,678,878	+				+1.5
3,678,879	-				+0.1
3,678,997	+		HGI48_RS16420	0.12	+2.2
3,678,997	+		HGI48_RS16420	0.12	-1.0
3,678,998	-				+2.8
3,678,998	-		HGI48_RS16420	0.12	-1.9
3,679,073	-		HGI48_RS16420	0.18	+0.7
3,679,102	+		HGI48_RS16420	0.20	-1.4
3,679,103	-				-0.6
3,679,103	-		HGI48_RS16420	0.20	+1.8
3,679,103	-		HGI48_RS16420	0.20	-2.2
3,679,127	+		HGI48_RS16420	0.21	+0.2
3,679,127	+		HGI48_RS16420	0.21	-1.9
3,679,127	+		HGI48_RS16420	0.21	-1.0
3,679,127	+		HGI48_RS16420	0.21	-0.9
3,679,127	+				+1.0
3,679,128	-		HGI48_RS16420	0.22	-1.0
3,679,128	-		HGI48_RS16420	0.22	-0.6
3,679,128	-				+1.0
3,679,128	-		HGI48_RS16420	0.22	+0.6
3,679,128	-		HGI48_RS16420	0.22	+1.0
3,679,199	+		HGI48_RS16420	0.27	+1.4
3,679,199	+		HGI48_RS16420	0.27	+1.3
3,679,200	-		HGI48_RS16420	0.27	-2.7
3,679,755	-		HGI48_RS16420	0.66	+0.5
3,679,782	-				+2.3
3,679,844	+				+1.5
3,679,844	+		HGI48_RS16420	0.72	-1.6
3,679,845	-		HGI48_RS16420	0.72	-2.2
3,679,845	-		HGI48_RS16420	0.72	-1.4
3,679,845	-		HGI48_RS16420	0.72	-2.7
3,679,845	-		HGI48_RS16420	0.72	-3.0
3,679,845	-		HGI48_RS16420	0.72	-1.2
3,679,845	-		HGI48_RS16420	0.72	-2.2
3,679,845	-				+1.0
3,679,942	+		HGI48_RS16420	0.79	+0.8
3,679,942	+		HGI48_RS16420	0.79	+0.8
3,679,942	+		HGI48_RS16420	0.79	+1.4
3,679,968	-		HGI48_RS16420	0.80	+0.1
3,680,033	-		HGI48_RS16420	0.85	+1.3
3,680,337	+				-2.4
3,680,338	-				-1.0
3,680,338	-				+2.6
3,680,348	+				+2.0
3,680,348	+				-1.5
3,680,348	+				+2.2
3,680,349	-				-2.0
3,680,349	-				-1.9
3,680,349	-				+1.1
3,680,361	-				-1.0
3,680,446	+				-0.9
3,680,447	-				+1.0
3,680,607	+		HGI48_RS16425	0.16	-1.9
3,680,607	+		HGI48_RS16425	0.16	+1.4
3,680,607	+		HGI48_RS16425	0.16	+2.4
3,680,607	+		HGI48_RS16425	0.16	-2.2
3,680,608	-		HGI48_RS16425	0.16	-1.6
3,680,608	-		HGI48_RS16425	0.16	+1.3
3,680,608	-		HGI48_RS16425	0.16	-1.9
3,680,608	-		HGI48_RS16425	0.16	-0.0
3,680,608	-		HGI48_RS16425	0.16	-1.6
3,680,608	-		HGI48_RS16425	0.16	+0.4
3,680,608	-		HGI48_RS16425	0.16	+2.2
3,680,608	-		HGI48_RS16425	0.16	-1.0
3,680,628	+		HGI48_RS16425	0.17	+1.5
3,680,629	-		HGI48_RS16425	0.17	-1.9
3,680,648	+		HGI48_RS16425	0.18	+1.1
3,680,648	+		HGI48_RS16425	0.18	+1.6
3,680,648	+		HGI48_RS16425	0.18	-2.2
3,680,649	-		HGI48_RS16425	0.18	+1.3
3,680,649	-		HGI48_RS16425	0.18	-2.6
3,680,749	-		HGI48_RS16425	0.24	+0.8
3,680,835	+		HGI48_RS16425	0.29	+1.4
3,680,835	+		HGI48_RS16425	0.29	-0.3
3,680,841	+		HGI48_RS16425	0.29	+1.2
3,680,841	+		HGI48_RS16425	0.29	+1.5
3,680,842	-		HGI48_RS16425	0.30	-1.9
3,680,925	+		HGI48_RS16425	0.34	+3.8
3,680,925	+		HGI48_RS16425	0.34	-0.1
3,681,043	+		HGI48_RS16425	0.41	-1.4
3,681,126	+		HGI48_RS16425	0.46	-1.0
3,681,126	+				-0.6
3,681,126	+		HGI48_RS16425	0.46	-2.0
3,681,126	+		HGI48_RS16425	0.46	-0.6
3,681,126	+		HGI48_RS16425	0.46	-2.5
3,681,126	+		HGI48_RS16425	0.46	-1.4
3,681,126	+		HGI48_RS16425	0.46	+1.0
3,681,127	-				-0.6
3,681,139	-				-0.6
3,681,141	+		HGI48_RS16425	0.47	+0.1
3,681,141	+		HGI48_RS16425	0.47	+2.5
3,681,142	-		HGI48_RS16425	0.47	-2.0
3,681,222	+		HGI48_RS16425	0.52	+1.0
3,681,222	+		HGI48_RS16425	0.52	+0.1
3,681,222	+		HGI48_RS16425	0.52	-1.0
3,681,223	-		HGI48_RS16425	0.52	-2.7
3,681,223	-		HGI48_RS16425	0.52	-1.4
3,681,223	-		HGI48_RS16425	0.52	-1.0
3,681,223	-		HGI48_RS16425	0.52	+1.0
3,681,223	-		HGI48_RS16425	0.52	-0.3