Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15125

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,403,541	-		HGI48_RS15115	0.69	+0.7
3,403,543	+				+0.2
3,403,543	+		HGI48_RS15115	0.69	+1.9
3,403,543	+		HGI48_RS15115	0.69	-1.2
3,403,544	-				+1.8
3,403,544	-		HGI48_RS15115	0.69	-1.8
3,403,544	-		HGI48_RS15115	0.69	-1.8
3,403,592	+		HGI48_RS15115	0.76	+0.8
3,403,592	+		HGI48_RS15115	0.76	+0.1
3,403,592	+		HGI48_RS15115	0.76	-0.5
3,403,592	+				+0.8
3,403,592	+				-0.8
3,403,592	+		HGI48_RS15115	0.76	-2.0
3,403,592	+		HGI48_RS15115	0.76	-2.3
3,403,592	+		HGI48_RS15115	0.76	+2.1
3,403,593	-		HGI48_RS15115	0.76	+0.8
3,403,593	-		HGI48_RS15115	0.76	+0.9
3,403,593	-		HGI48_RS15115	0.76	-2.0
3,403,593	-		HGI48_RS15115	0.76	+0.1
3,403,593	-				+0.8
3,403,593	-		HGI48_RS15115	0.76	-0.1
3,403,593	-				+2.2
3,403,593	-		HGI48_RS15115	0.76	+0.2
3,403,593	-		HGI48_RS15115	0.76	-3.3
3,403,594	+		HGI48_RS15115	0.76	-1.0
3,403,594	+		HGI48_RS15115	0.76	-1.5
3,403,594	+		HGI48_RS15115	0.76	+1.7
3,403,594	+		HGI48_RS15115	0.76	+1.1
3,403,594	+		HGI48_RS15115	0.76	-1.9
3,403,594	+		HGI48_RS15115	0.76	-0.5
3,403,594	+		HGI48_RS15115	0.76	-1.8
3,403,595	-		HGI48_RS15115	0.76	+0.8
3,403,595	-		HGI48_RS15115	0.76	-0.3
3,403,595	-				-0.8
3,403,595	-		HGI48_RS15115	0.76	+1.2
3,403,595	-		HGI48_RS15115	0.76	-0.4
3,403,595	-		HGI48_RS15115	0.76	+0.3
3,403,595	-		HGI48_RS15115	0.76	-0.9
3,403,595	-		HGI48_RS15115	0.76	-2.6
3,403,595	-		HGI48_RS15115	0.76	+1.5
3,403,626	-		HGI48_RS15115	0.81	-1.8
3,403,626	-				-0.8
3,403,722	+				-1.8
3,403,791	+				+0.4
3,403,857	+		HGI48_RS15120	0.13	-0.6
3,403,857	+		HGI48_RS15120	0.13	-2.5
3,403,857	+		HGI48_RS15120	0.13	+1.4
3,403,857	+		HGI48_RS15120	0.13	+1.6
3,403,858	-		HGI48_RS15120	0.14	+0.8
3,403,858	-		HGI48_RS15120	0.14	+0.5
3,403,858	-				+1.6
3,403,890	+		HGI48_RS15120	0.18	-1.5
3,404,098	+				+3.8
3,404,099	-		HGI48_RS15120	0.47	-1.8
3,404,099	-		HGI48_RS15120	0.47	-2.0
3,404,102	+		HGI48_RS15120	0.47	-2.3
3,404,102	+		HGI48_RS15120	0.47	-1.2
3,404,140	-		HGI48_RS15120	0.53	+0.3
3,404,197	+		HGI48_RS15120	0.60	-1.5
3,404,256	+		HGI48_RS15120	0.69	+0.8
3,404,256	+				+1.6
3,404,257	-		HGI48_RS15120	0.69	-1.0
3,404,257	-		HGI48_RS15120	0.69	-1.5
3,404,265	+		HGI48_RS15120	0.70	+1.6
3,404,265	+				-0.8
3,404,265	+		HGI48_RS15120	0.70	+1.4
3,404,265	+		HGI48_RS15120	0.70	-2.0
3,404,265	+		HGI48_RS15120	0.70	+1.1
3,404,266	-		HGI48_RS15120	0.70	-1.8
3,404,266	-		HGI48_RS15120	0.70	+1.6
3,404,266	-		HGI48_RS15120	0.70	-1.5
3,404,266	-		HGI48_RS15120	0.70	+3.3
3,404,269	+		HGI48_RS15120	0.70	-2.2
3,404,269	+		HGI48_RS15120	0.70	+0.3
3,404,269	+		HGI48_RS15120	0.70	-1.5
3,404,269	+		HGI48_RS15120	0.70	+0.5
3,404,270	-		HGI48_RS15120	0.71	-1.2
3,404,270	-		HGI48_RS15120	0.71	-0.1
3,404,270	-		HGI48_RS15120	0.71	-1.0
3,404,270	-		HGI48_RS15120	0.71	-0.2
3,404,307	+				+0.2
3,404,307	+		HGI48_RS15120	0.76	+0.5
3,404,307	+		HGI48_RS15120	0.76	-1.4
3,404,308	-		HGI48_RS15120	0.76	-2.0
3,404,308	-		HGI48_RS15120	0.76	-1.5
3,404,468	+				+1.7
3,404,483	-				-0.2
3,404,787	+		HGI48_RS15125	0.34	-2.2
3,404,787	+		HGI48_RS15125	0.34	+0.5
3,404,788	-		HGI48_RS15125	0.34	+0.6
3,404,817	+		HGI48_RS15125	0.37	+0.0
3,404,836	+				+3.6
3,404,836	+		HGI48_RS15125	0.39	-1.0
3,404,836	+		HGI48_RS15125	0.39	-1.5
3,404,836	+		HGI48_RS15125	0.39	+0.4
3,404,836	+		HGI48_RS15125	0.39	-2.8
3,404,836	+		HGI48_RS15125	0.39	-1.2
3,404,836	+		HGI48_RS15125	0.39	-0.2
3,404,837	-		HGI48_RS15125	0.40	-2.8
3,404,837	-		HGI48_RS15125	0.40	-1.2
3,404,838	+		HGI48_RS15125	0.40	+0.2
3,404,908	+		HGI48_RS15125	0.48	-0.0
3,404,909	-		HGI48_RS15125	0.48	-2.3
3,404,935	+		HGI48_RS15125	0.51	-2.9
3,404,935	+		HGI48_RS15125	0.51	-0.8
3,404,989	+		HGI48_RS15125	0.57	-2.5
3,404,989	+		HGI48_RS15125	0.57	-2.3
3,404,989	+				+1.6
3,404,989	+		HGI48_RS15125	0.57	-0.1
3,404,989	+				-0.8
3,404,990	-		HGI48_RS15125	0.57	-2.2
3,404,990	-		HGI48_RS15125	0.57	-1.8
3,405,012	+		HGI48_RS15125	0.60	+0.9
3,405,012	+		HGI48_RS15125	0.60	-1.5
3,405,012	+		HGI48_RS15125	0.60	-3.1
3,405,040	+		HGI48_RS15125	0.63	+0.3
3,405,095	+		HGI48_RS15125	0.70	+1.8
3,405,096	-		HGI48_RS15125	0.70	+2.6
3,405,096	-				-0.2
3,405,126	-		HGI48_RS15125	0.73	-0.5
3,405,195	-		HGI48_RS15125	0.81	-2.0
3,405,232	-		HGI48_RS15125	0.86	-2.0
3,405,271	+				-2.0
3,405,271	+				+1.1
3,405,271	+				+2.1
3,405,317	+				-1.8
3,405,317	+				-1.5
3,405,317	+				-1.5
3,405,317	+				-0.3
3,405,317	+				+0.0
3,405,317	+				-1.8
3,405,318	-				+2.1
3,405,318	-				-0.3
3,405,319	-				+1.8
3,405,389	+				-1.2
3,405,390	-				+2.6
3,405,396	-				+0.5
3,405,396	-				+0.5
3,405,396	-				-1.2
3,405,399	+				-0.8
3,405,399	+				+0.6
3,405,400	-				-0.8
3,405,437	+				-1.8
3,405,442	-				-0.2
3,405,449	+				-2.2
3,405,449	+				-2.0
3,405,449	+				+3.6
3,405,449	+				+0.3
3,405,450	-				+0.8
3,405,450	-				-2.3
3,405,520	+				+0.8
3,405,566	+				-1.8
3,405,566	+				-2.5
3,405,566	+				+1.7
3,405,566	+				+1.5
3,405,566	+				-1.5
3,405,566	+				+1.8
3,405,566	+				+1.1
3,405,567	-				+0.6
3,405,567	-				-1.2
3,405,567	-				-1.8
3,405,567	-				-1.2
3,405,567	-				-2.6
3,405,567	-				-1.8
3,405,567	-				+1.0
3,405,567	-				-0.8
3,405,586	+				+0.1
3,405,586	+				+0.8
3,405,586	+				-0.2
3,405,586	+				-0.3
3,405,587	-				+0.1
3,405,587	-				+0.1
3,405,731	+		HGI48_RS15130	0.24	-2.5
3,405,732	-		HGI48_RS15130	0.24	-2.3
3,405,735	+		HGI48_RS15130	0.24	+0.5
3,405,735	+		HGI48_RS15130	0.24	+0.4
3,405,735	+		HGI48_RS15130	0.24	+0.1
3,405,736	-		HGI48_RS15130	0.25	-0.5
3,405,740	+		HGI48_RS15130	0.25	-0.2
3,405,740	+				+2.4
3,405,741	-		HGI48_RS15130	0.25	+0.7
3,405,772	+		HGI48_RS15130	0.31	-2.2
3,405,823	+		HGI48_RS15130	0.40	+0.4
3,405,824	-		HGI48_RS15130	0.40	-2.2
3,405,824	-		HGI48_RS15130	0.40	-1.2
3,405,995	+				-0.2
3,405,995	+		HGI48_RS15130	0.70	-0.3
3,405,996	-		HGI48_RS15130	0.70	+0.4
3,405,996	-		HGI48_RS15130	0.70	-2.6
3,406,043	-		HGI48_RS15130	0.78	-0.3