Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15015

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,377,651	+		HGI48_RS15010	0.60	-1.2
3,377,681	-		HGI48_RS15010	0.62	-0.8
3,377,687	-		HGI48_RS15010	0.62	-1.9
3,377,698	+		HGI48_RS15010	0.63	-1.2
3,377,698	+		HGI48_RS15010	0.63	-1.8
3,377,699	-		HGI48_RS15010	0.63	+0.0
3,377,792	+				-0.2
3,377,792	+		HGI48_RS15010	0.67	+1.1
3,377,875	+		HGI48_RS15010	0.71	-3.1
3,377,875	+		HGI48_RS15010	0.71	-3.1
3,377,875	+		HGI48_RS15010	0.71	-1.8
3,377,876	-		HGI48_RS15010	0.71	-1.2
3,377,876	-		HGI48_RS15010	0.71	+0.4
3,377,876	-		HGI48_RS15010	0.71	+0.4
3,377,876	-				+1.2
3,377,880	-		HGI48_RS15010	0.71	-4.1
3,377,912	+		HGI48_RS15010	0.73	-2.4
3,377,912	+				+2.4
3,378,227	+		HGI48_RS15010	0.88	-1.1
3,378,228	-		HGI48_RS15010	0.88	-2.6
3,378,228	-		HGI48_RS15010	0.88	-0.6
3,378,335	+				-0.0
3,378,335	+				-0.2
3,378,336	-				-0.8
3,378,336	-				+0.1
3,378,409	+				+0.8
3,378,423	+				-1.5
3,378,423	+				-1.5
3,378,423	+				+0.6
3,378,423	+				+0.0
3,378,423	+				-0.8
3,378,424	-				-1.2
3,378,424	-				-0.8
3,378,424	-				-1.8
3,378,424	-				-2.4
3,378,424	-				-0.8
3,378,424	-				-2.2
3,378,424	-				-1.5
3,378,468	-				-1.8
3,378,479	-				-1.5
3,378,481	+				-2.2
3,378,501	+				-3.2
3,378,502	-				-2.5
3,378,503	+				-1.4
3,378,503	+				-1.5
3,378,503	+				-1.2
3,378,503	+				-3.6
3,378,504	-				-2.2
3,378,542	+				-2.6
3,378,556	-				+0.6
3,378,556	-				-0.8
3,378,590	+				-0.3
3,378,591	-				+0.9
3,378,603	-				-2.4
3,378,606	+				-1.8
3,378,606	+				-1.5
3,378,611	-				-2.0
3,378,645	+				+1.1
3,378,645	+				+1.2
3,378,645	+				+0.2
3,378,645	+				-0.2
3,378,645	+				+2.4
3,378,645	+				+0.6
3,378,697	-				-2.2
3,378,698	+				-1.2
3,378,698	+				-1.5
3,378,698	+				-0.9
3,378,698	+				+0.2
3,378,726	+		HGI48_RS15015	0.10	-1.5
3,378,762	-		HGI48_RS15015	0.13	-0.8
3,378,800	-		HGI48_RS15015	0.17	-1.5
3,378,800	-				-0.8
3,378,841	+		HGI48_RS15015	0.20	-1.5
3,378,841	+		HGI48_RS15015	0.20	-1.6
3,378,842	-		HGI48_RS15015	0.20	-2.6
3,378,842	-		HGI48_RS15015	0.20	-1.2
3,378,842	-		HGI48_RS15015	0.20	-1.5
3,378,959	+		HGI48_RS15015	0.30	+1.2
3,378,960	-		HGI48_RS15015	0.30	+0.8
3,379,016	+		HGI48_RS15015	0.35	-1.4
3,379,022	+		HGI48_RS15015	0.35	-1.8
3,379,022	+		HGI48_RS15015	0.35	-2.6
3,379,022	+		HGI48_RS15015	0.35	-3.4
3,379,023	-		HGI48_RS15015	0.35	-1.5
3,379,023	-		HGI48_RS15015	0.35	+0.0
3,379,023	-		HGI48_RS15015	0.35	-1.5
3,379,273	+		HGI48_RS15015	0.56	-1.8
3,379,274	-		HGI48_RS15015	0.56	+1.8
3,379,274	-		HGI48_RS15015	0.56	-0.5
3,379,280	-				-0.2
3,379,332	+		HGI48_RS15015	0.61	-1.2
3,379,333	-		HGI48_RS15015	0.61	-0.2
3,379,334	+		HGI48_RS15015	0.61	-3.0
3,379,334	+		HGI48_RS15015	0.61	+0.5
3,379,334	+		HGI48_RS15015	0.61	-1.4
3,379,334	+		HGI48_RS15015	0.61	+0.8
3,379,334	+		HGI48_RS15015	0.61	-3.0
3,379,334	+		HGI48_RS15015	0.61	-0.8
3,379,334	+		HGI48_RS15015	0.61	-2.9
3,379,334	+		HGI48_RS15015	0.61	-0.2
3,379,334	+		HGI48_RS15015	0.61	-0.9
3,379,334	+		HGI48_RS15015	0.61	-2.6
3,379,335	-		HGI48_RS15015	0.61	-3.1
3,379,335	-		HGI48_RS15015	0.61	-2.0
3,379,335	-				+2.8
3,379,335	-		HGI48_RS15015	0.61	+0.2
3,379,335	-		HGI48_RS15015	0.61	-1.5
3,379,335	-				-0.2
3,379,338	+		HGI48_RS15015	0.61	+0.2
3,379,338	+		HGI48_RS15015	0.61	-1.8
3,379,338	+		HGI48_RS15015	0.61	-2.6
3,379,338	+		HGI48_RS15015	0.61	-0.4
3,379,339	-				+2.0
3,379,339	-		HGI48_RS15015	0.61	-2.2
3,379,339	-		HGI48_RS15015	0.61	-1.5
3,379,339	-				-0.8
3,379,339	-		HGI48_RS15015	0.61	+0.2
3,379,365	-		HGI48_RS15015	0.64	-1.2
3,379,444	+		HGI48_RS15015	0.70	+0.1
3,379,445	-		HGI48_RS15015	0.70	+0.2
3,379,517	+		HGI48_RS15015	0.76	+0.9
3,379,566	+		HGI48_RS15015	0.80	-1.2
3,379,567	-		HGI48_RS15015	0.81	+0.8
3,379,568	+		HGI48_RS15015	0.81	-1.2
3,379,568	+		HGI48_RS15015	0.81	-2.9
3,379,568	+		HGI48_RS15015	0.81	-1.5
3,379,568	+				-0.2
3,379,568	+		HGI48_RS15015	0.81	-2.2
3,379,568	+		HGI48_RS15015	0.81	-1.8
3,379,569	-		HGI48_RS15015	0.81	-0.6
3,379,569	-		HGI48_RS15015	0.81	-1.2
3,379,569	-		HGI48_RS15015	0.81	-1.0
3,379,628	+				-0.8
3,379,629	-		HGI48_RS15015	0.86	+0.2
3,379,629	-		HGI48_RS15015	0.86	-3.9
3,379,687	-				-2.5
3,379,716	+				-1.8
3,379,716	+				-1.8
3,379,720	-				-0.2
3,379,787	-				+1.5
3,379,817	+				-0.8
3,379,818	-				-0.5
3,379,846	+				-2.2
3,379,847	-				-1.2
3,379,864	+				+1.2
3,379,865	-				-0.2
3,379,865	-				+1.6
3,379,918	+		HGI48_RS15020	0.13	-2.8
3,379,918	+		HGI48_RS15020	0.13	+0.8
3,379,952	-		HGI48_RS15020	0.18	-2.5
3,379,972	+				+2.9
3,379,972	+				-0.2
3,379,972	+		HGI48_RS15020	0.20	-1.2
3,379,972	+		HGI48_RS15020	0.20	-2.4
3,379,973	-		HGI48_RS15020	0.20	+0.8
3,379,973	-		HGI48_RS15020	0.20	-1.0
3,379,973	-		HGI48_RS15020	0.20	-0.2
3,379,977	-		HGI48_RS15020	0.21	-1.3
3,380,079	-				-0.2
3,380,097	-		HGI48_RS15020	0.35	-3.1
3,380,176	+		HGI48_RS15020	0.44	-0.1
3,380,176	+		HGI48_RS15020	0.44	-2.2
3,380,177	-		HGI48_RS15020	0.44	+0.5
3,380,177	-		HGI48_RS15020	0.44	+0.8
3,380,177	-		HGI48_RS15020	0.44	+1.1
3,380,206	+		HGI48_RS15020	0.48	-0.6
3,380,206	+		HGI48_RS15020	0.48	-0.5
3,380,267	+		HGI48_RS15020	0.55	-1.5
3,380,267	+		HGI48_RS15020	0.55	+1.1
3,380,268	-		HGI48_RS15020	0.55	-2.2
3,380,268	-		HGI48_RS15020	0.55	-1.5
3,380,383	-		HGI48_RS15020	0.69	+0.4
3,380,383	-		HGI48_RS15020	0.69	+0.2
3,380,383	-		HGI48_RS15020	0.69	-0.0
3,380,443	+		HGI48_RS15020	0.76	+1.5
3,380,443	+		HGI48_RS15020	0.76	+1.1
3,380,444	-				-0.8
3,380,474	-		HGI48_RS15020	0.80	-1.5
3,380,514	+		HGI48_RS15020	0.85	+1.1
3,380,567	-				+2.1
3,380,636	+				-3.3
3,380,637	-				+2.1
3,380,651	+				+0.1
3,380,669	+				-0.8