Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14980

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,369,576	+				+0.0
3,369,599	-				+0.8
3,369,601	+				-1.8
3,369,602	-				+0.2
3,369,700	+		HGI48_RS14965	0.28	-1.5
3,369,701	-		HGI48_RS14965	0.28	-1.5
3,369,701	-		HGI48_RS14965	0.28	+0.4
3,369,749	+		HGI48_RS14965	0.43	+1.6
3,369,777	-		HGI48_RS14965	0.51	+1.3
3,369,828	+				+0.8
3,369,828	+		HGI48_RS14965	0.66	-0.4
3,369,829	-		HGI48_RS14965	0.67	+1.1
3,369,840	+		HGI48_RS14965	0.70	-1.5
3,369,840	+				-0.8
3,369,841	-		HGI48_RS14965	0.70	+0.5
3,369,898	+		HGI48_RS14965	0.87	+0.8
3,369,899	-		HGI48_RS14965	0.88	-0.3
3,369,904	+		HGI48_RS14965	0.89	+0.8
3,369,905	-		HGI48_RS14965	0.89	+0.0
3,369,905	-		HGI48_RS14965	0.89	+0.9
3,369,905	-		HGI48_RS14965	0.89	-2.0
3,369,905	-		HGI48_RS14965	0.89	-2.0
3,369,959	-				-1.5
3,369,982	+		HGI48_RS14970	0.14	-2.4
3,370,068	-		HGI48_RS14970	0.53	+0.6
3,370,068	-		HGI48_RS14970	0.53	-1.6
3,370,068	-		HGI48_RS14970	0.53	-2.2
3,370,110	-		HGI48_RS14970	0.72	-1.5
3,370,137	+		HGI48_RS14970	0.84	-3.2
3,370,137	+		HGI48_RS14970	0.84	-0.4
3,370,156	-				+0.3
3,370,156	-				-2.2
3,370,171	-				+0.6
3,370,171	-				+0.5
3,370,171	-				-1.8
3,370,171	-				+0.4
3,370,176	-				+0.3
3,370,176	-				-1.5
3,370,178	+				+1.2
3,370,264	-		HGI48_RS14975	0.21	-1.5
3,370,267	+		HGI48_RS14975	0.22	+2.9
3,370,267	+		HGI48_RS14975	0.22	+2.1
3,370,267	+		HGI48_RS14975	0.22	-3.5
3,370,267	+		HGI48_RS14975	0.22	-2.2
3,370,267	+				-0.8
3,370,267	+		HGI48_RS14975	0.22	+0.7
3,370,267	+		HGI48_RS14975	0.22	+2.1
3,370,268	-		HGI48_RS14975	0.22	+1.8
3,370,268	-		HGI48_RS14975	0.22	-1.8
3,370,268	-		HGI48_RS14975	0.22	+0.8
3,370,268	-		HGI48_RS14975	0.22	+2.4
3,370,268	-		HGI48_RS14975	0.22	-0.4
3,370,268	-				-0.8
3,370,268	-		HGI48_RS14975	0.22	-1.2
3,370,271	+		HGI48_RS14975	0.23	+0.4
3,370,271	+		HGI48_RS14975	0.23	+2.1
3,370,309	+		HGI48_RS14975	0.34	-0.0
3,370,337	-		HGI48_RS14975	0.42	-0.4
3,370,337	-		HGI48_RS14975	0.42	-1.5
3,370,397	+		HGI48_RS14975	0.58	+0.0
3,370,397	+		HGI48_RS14975	0.58	+0.5
3,370,404	+		HGI48_RS14975	0.60	+1.8
3,370,404	+				+0.8
3,370,405	-		HGI48_RS14975	0.61	-0.6
3,370,405	-		HGI48_RS14975	0.61	+2.1
3,370,405	-		HGI48_RS14975	0.61	+0.6
3,370,407	+		HGI48_RS14975	0.61	-2.9
3,370,408	-				-0.2
3,370,470	+		HGI48_RS14975	0.79	-0.4
3,370,470	+		HGI48_RS14975	0.79	-1.8
3,370,470	+		HGI48_RS14975	0.79	+1.1
3,370,470	+		HGI48_RS14975	0.79	+1.1
3,370,470	+		HGI48_RS14975	0.79	-0.6
3,370,470	+		HGI48_RS14975	0.79	+2.1
3,370,471	-		HGI48_RS14975	0.79	-1.5
3,370,471	-				-0.8
3,370,471	-		HGI48_RS14975	0.79	+1.9
3,370,484	+		HGI48_RS14975	0.83	+0.5
3,370,485	-		HGI48_RS14975	0.83	+1.7
3,370,485	-		HGI48_RS14975	0.83	+0.5
3,370,485	-		HGI48_RS14975	0.83	+2.1
3,370,485	-		HGI48_RS14975	0.83	-2.0
3,370,498	-				-0.2
3,370,509	-				+0.1
3,370,569	-				+0.9
3,370,569	-				+0.0
3,370,569	-				+1.4
3,370,575	+				-0.6
3,370,575	+				+0.1
3,370,576	-				+1.2
3,370,576	-				+0.6
3,370,576	-				+0.1
3,370,589	+		HGI48_RS14980	0.12	+0.6
3,370,599	+		HGI48_RS14980	0.15	+0.1
3,370,611	-		HGI48_RS14980	0.19	-1.5
3,370,636	+		HGI48_RS14980	0.27	+1.5
3,370,637	-		HGI48_RS14980	0.27	+0.8
3,370,644	-		HGI48_RS14980	0.29	+0.5
3,370,663	+		HGI48_RS14980	0.35	-3.2
3,370,663	+		HGI48_RS14980	0.35	-0.8
3,370,664	-		HGI48_RS14980	0.35	-2.4
3,370,664	-		HGI48_RS14980	0.35	-1.2
3,370,664	-		HGI48_RS14980	0.35	+0.4
3,370,664	-				+2.6
3,370,702	+		HGI48_RS14980	0.47	+1.4
3,370,702	+		HGI48_RS14980	0.47	+1.1
3,370,703	-		HGI48_RS14980	0.47	-2.0
3,370,822	+		HGI48_RS14980	0.83	-1.0
3,370,822	+		HGI48_RS14980	0.83	-3.1
3,370,822	+		HGI48_RS14980	0.83	-0.8
3,370,822	+		HGI48_RS14980	0.83	-2.6
3,370,823	-		HGI48_RS14980	0.84	+2.5
3,370,823	-		HGI48_RS14980	0.84	-1.5
3,370,823	-		HGI48_RS14980	0.84	-1.8
3,370,884	+				-2.2
3,370,884	+				-2.0
3,370,885	-				+1.6
3,370,885	-				+0.6
3,370,910	-				+2.2
3,370,974	+				+1.8
3,371,020	+				-1.8
3,371,078	-				+0.4
3,371,093	-				+1.6
3,371,137	+				-1.2
3,371,137	+				+2.3
3,371,137	+				-1.5
3,371,137	+				-1.2
3,371,138	-				-0.8
3,371,139	+				-0.9
3,371,139	+				+0.8
3,371,139	+				-0.3
3,371,140	-				-2.5
3,371,140	-				+1.3
3,371,140	-				-1.5
3,371,146	+				-1.2
3,371,188	+				-1.8
3,371,188	+				+1.2
3,371,188	+				+0.2
3,371,188	+				-2.2
3,371,189	-				-0.2
3,371,189	-				-2.4
3,371,189	-				-2.0
3,371,189	-				+1.2
3,371,189	-				+1.3
3,371,189	-				-0.8
3,371,189	-				+0.5
3,371,195	+				+0.5
3,371,196	-				-2.0
3,371,207	-				+2.5
3,371,213	+				-1.2
3,371,213	+				-1.8
3,371,213	+				-0.3
3,371,224	+				-1.6
3,371,224	+				-0.8
3,371,241	-				-0.8
3,371,241	-				-1.5
3,371,303	-				-1.8
3,371,310	+				-2.4
3,371,310	+				+0.8
3,371,311	-				-1.2
3,371,311	-				-2.9
3,371,315	+				-1.8
3,371,315	+				+1.3
3,371,316	-				+0.6
3,371,408	-				-0.8
3,371,409	+				+3.3
3,371,409	+				-1.5
3,371,410	-				-1.8
3,371,410	-				-0.1
3,371,410	-				-1.2
3,371,445	+				-2.0
3,371,445	+				-0.8
3,371,446	-				+0.2
3,371,446	-				-0.8
3,371,460	+				-1.5
3,371,461	-				+0.1
3,371,467	-				-3.0
3,371,616	+		HGI48_RS14985	0.15	+0.5
3,371,666	+		HGI48_RS14985	0.20	+0.6
3,371,830	+		HGI48_RS14985	0.34	-2.5
3,371,831	-				-0.2