Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14820

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,335,443	+				-0.2
3,335,443	+				+0.8
3,335,443	+				-1.2
3,335,444	-				-1.8
3,335,444	-				+0.8
3,335,444	-				-2.9
3,335,444	-				-0.7
3,335,444	-				-1.5
3,335,445	+		HGI48_RS14810	0.10	+0.8
3,335,445	+		HGI48_RS14810	0.10	+1.0
3,335,445	+		HGI48_RS14810	0.10	-2.5
3,335,446	-		HGI48_RS14810	0.11	+0.8
3,335,446	-		HGI48_RS14810	0.11	+1.5
3,335,446	-		HGI48_RS14810	0.11	+1.0
3,335,496	+				+2.8
3,335,497	-		HGI48_RS14810	0.26	+1.1
3,335,497	-		HGI48_RS14810	0.26	-1.2
3,335,532	-				-0.8
3,335,532	-		HGI48_RS14810	0.37	-2.4
3,335,542	+		HGI48_RS14810	0.40	+1.4
3,335,542	+		HGI48_RS14810	0.40	-1.8
3,335,542	+		HGI48_RS14810	0.40	+1.8
3,335,542	+		HGI48_RS14810	0.40	+0.6
3,335,542	+		HGI48_RS14810	0.40	-1.5
3,335,542	+		HGI48_RS14810	0.40	+0.1
3,335,543	-		HGI48_RS14810	0.41	-1.8
3,335,543	-				-0.8
3,335,811	-		HGI48_RS14815	0.30	+3.4
3,335,897	+		HGI48_RS14815	0.59	-2.0
3,335,897	+		HGI48_RS14815	0.59	-1.5
3,335,899	+		HGI48_RS14815	0.59	-0.2
3,335,900	-		HGI48_RS14815	0.60	-1.5
3,335,918	+		HGI48_RS14815	0.66	+0.8
3,335,943	+		HGI48_RS14815	0.74	-0.3
3,335,943	+		HGI48_RS14815	0.74	+1.4
3,335,943	+		HGI48_RS14815	0.74	+0.5
3,335,944	-		HGI48_RS14815	0.74	-1.8
3,335,944	-		HGI48_RS14815	0.74	+1.2
3,335,944	-		HGI48_RS14815	0.74	-0.5
3,335,944	-		HGI48_RS14815	0.74	-1.2
3,335,982	-		HGI48_RS14815	0.87	-2.0
3,335,982	-		HGI48_RS14815	0.87	+0.0
3,336,009	+				-0.8
3,336,018	+				+1.2
3,336,019	-				+0.2
3,336,019	-				-1.2
3,336,164	+				-2.0
3,336,164	+				-1.2
3,336,164	+				+0.5
3,336,165	-				+2.3
3,336,193	+				-0.7
3,336,194	-				-2.2
3,336,194	-				-0.3
3,336,238	+				-1.2
3,336,238	+				+0.4
3,336,368	-				-0.6
3,336,373	+				+2.7
3,336,377	+				+1.3
3,336,377	+				-1.2
3,336,377	+				+0.8
3,336,377	+				+2.4
3,336,378	-				+0.2
3,336,378	-				-3.0
3,336,378	-				-0.8
3,336,387	+				-0.4
3,336,397	-				-0.5
3,336,412	+				-2.0
3,336,413	-				-2.0
3,336,508	+		HGI48_RS14820	0.11	-1.2
3,336,508	+		HGI48_RS14820	0.11	+1.6
3,336,508	+				+2.4
3,336,509	-		HGI48_RS14820	0.11	+1.6
3,336,509	-		HGI48_RS14820	0.11	-0.2
3,336,509	-				-0.2
3,336,509	-		HGI48_RS14820	0.11	+0.4
3,336,509	-		HGI48_RS14820	0.11	+1.2
3,336,562	-		HGI48_RS14820	0.16	-1.5
3,336,573	+		HGI48_RS14820	0.17	-1.8
3,336,574	-		HGI48_RS14820	0.17	+1.8
3,336,602	+		HGI48_RS14820	0.20	-1.4
3,336,602	+		HGI48_RS14820	0.20	+0.8
3,336,606	+		HGI48_RS14820	0.20	-1.5
3,336,639	+		HGI48_RS14820	0.24	+2.2
3,336,639	+				+2.6
3,336,639	+		HGI48_RS14820	0.24	+0.1
3,336,639	+		HGI48_RS14820	0.24	-2.9
3,336,639	+		HGI48_RS14820	0.24	+1.8
3,336,639	+		HGI48_RS14820	0.24	-1.8
3,336,639	+		HGI48_RS14820	0.24	-1.7
3,336,639	+		HGI48_RS14820	0.24	+0.1
3,336,639	+		HGI48_RS14820	0.24	+1.4
3,336,640	-		HGI48_RS14820	0.24	+2.0
3,336,640	-		HGI48_RS14820	0.24	-1.8
3,336,640	-		HGI48_RS14820	0.24	-2.4
3,336,643	+		HGI48_RS14820	0.24	+2.9
3,336,643	+		HGI48_RS14820	0.24	-1.8
3,336,644	-		HGI48_RS14820	0.24	+2.1
3,336,678	+		HGI48_RS14820	0.27	+0.4
3,336,678	+		HGI48_RS14820	0.27	-1.5
3,336,678	+				-0.2
3,336,744	+		HGI48_RS14820	0.34	+0.7
3,336,744	+				+0.8
3,336,744	+		HGI48_RS14820	0.34	-2.0
3,336,744	+		HGI48_RS14820	0.34	+1.7
3,336,744	+		HGI48_RS14820	0.34	+0.8
3,336,745	-		HGI48_RS14820	0.34	-1.2
3,336,745	-		HGI48_RS14820	0.34	+2.6
3,336,745	-		HGI48_RS14820	0.34	+0.4
3,336,745	-		HGI48_RS14820	0.34	-1.8
3,336,789	+		HGI48_RS14820	0.38	+0.4
3,336,790	-		HGI48_RS14820	0.38	-0.1
3,336,790	-		HGI48_RS14820	0.38	-0.4
3,336,836	+		HGI48_RS14820	0.43	-3.4
3,336,859	+		HGI48_RS14820	0.45	+2.6
3,336,891	+		HGI48_RS14820	0.48	-2.0
3,336,935	+				-0.8
3,337,001	+		HGI48_RS14820	0.59	+1.5
3,337,047	-		HGI48_RS14820	0.63	-1.0
3,337,062	-		HGI48_RS14820	0.65	+0.4
3,337,063	+		HGI48_RS14820	0.65	-1.5
3,337,064	-		HGI48_RS14820	0.65	-0.0
3,337,165	+		HGI48_RS14820	0.75	-0.4
3,337,165	+		HGI48_RS14820	0.75	+2.2
3,337,165	+		HGI48_RS14820	0.75	+3.5
3,337,165	+		HGI48_RS14820	0.75	-2.6
3,337,165	+		HGI48_RS14820	0.75	-2.8
3,337,165	+				-0.8
3,337,165	+		HGI48_RS14820	0.75	+0.0
3,337,165	+		HGI48_RS14820	0.75	+0.6
3,337,166	-		HGI48_RS14820	0.75	-2.0
3,337,166	-		HGI48_RS14820	0.75	+1.0
3,337,166	-		HGI48_RS14820	0.75	-1.2
3,337,227	+				-0.8
3,337,227	+		HGI48_RS14820	0.81	+1.2
3,337,227	+				+2.0
3,337,227	+		HGI48_RS14820	0.81	-3.4
3,337,227	+				+2.0
3,337,228	-		HGI48_RS14820	0.81	+1.6
3,337,228	-		HGI48_RS14820	0.81	-0.2
3,337,229	+		HGI48_RS14820	0.81	+0.1
3,337,229	+		HGI48_RS14820	0.81	-1.8
3,337,229	+		HGI48_RS14820	0.81	-2.0
3,337,229	+		HGI48_RS14820	0.81	-2.8
3,337,229	+		HGI48_RS14820	0.81	-3.2
3,337,230	-		HGI48_RS14820	0.81	+0.8
3,337,230	-		HGI48_RS14820	0.81	+1.3
3,337,243	+		HGI48_RS14820	0.82	-1.5
3,337,243	+		HGI48_RS14820	0.82	-0.2
3,337,354	+				-0.8
3,337,378	-				+2.1
3,337,417	+				+0.8
3,337,417	+				-0.6
3,337,417	+				-0.3
3,337,417	+				-0.5
3,337,417	+				-1.2
3,337,417	+				+1.1
3,337,508	-				-2.4
3,337,519	-				-2.0
3,337,530	+				+2.3
3,337,530	+				+2.0
3,337,530	+				+1.2
3,337,531	-				-1.8
3,337,531	-				+1.1
3,337,531	-				-1.2
3,337,531	-				+1.8
3,337,532	+				+0.4
3,337,532	+				-0.3
3,337,533	-				-1.2
3,337,533	-				-1.5
3,337,533	-				-0.2
3,337,533	-				-0.8
3,337,709	-		HGI48_RS14825	0.32	+0.3
3,337,732	+		HGI48_RS14825	0.37	-2.4
3,337,733	-		HGI48_RS14825	0.38	+0.5
3,337,748	+		HGI48_RS14825	0.41	+0.0
3,337,749	-		HGI48_RS14825	0.41	-2.0
3,337,793	+		HGI48_RS14825	0.51	-1.8
3,337,793	+		HGI48_RS14825	0.51	-0.2
3,337,793	+		HGI48_RS14825	0.51	+0.4
3,337,794	-		HGI48_RS14825	0.51	-3.3
3,337,794	-		HGI48_RS14825	0.51	+0.9
3,337,880	+		HGI48_RS14825	0.70	-0.9
3,337,880	+				+1.8
3,337,880	+				+1.2
3,337,881	-		HGI48_RS14825	0.70	-2.0
3,337,881	-				-0.2
3,337,884	+		HGI48_RS14825	0.71	+1.2
3,337,884	+		HGI48_RS14825	0.71	+1.0
3,337,896	+		HGI48_RS14825	0.73	-1.8
3,337,896	+		HGI48_RS14825	0.73	-1.5
3,337,896	+		HGI48_RS14825	0.73	-2.5
3,337,896	+		HGI48_RS14825	0.73	-0.8
3,337,896	+		HGI48_RS14825	0.73	+0.7
3,337,896	+		HGI48_RS14825	0.73	-2.0
3,337,896	+		HGI48_RS14825	0.73	+0.8
3,337,896	+		HGI48_RS14825	0.73	+0.1
3,337,897	-		HGI48_RS14825	0.73	+2.2
3,337,897	-		HGI48_RS14825	0.73	-0.0
3,337,897	-		HGI48_RS14825	0.73	-2.4
3,337,897	-		HGI48_RS14825	0.73	-2.2
3,337,899	-		HGI48_RS14825	0.74	-1.2
3,337,899	-		HGI48_RS14825	0.74	-1.5
3,337,945	-		HGI48_RS14825	0.84	-1.8
3,337,946	+		HGI48_RS14825	0.84	-2.9
3,337,977	-				-1.2
3,337,983	+				+0.1
3,337,983	+				-0.4
3,337,994	-				-1.2
3,338,050	-				-1.5
3,338,226	+				+1.7
3,338,282	-				-0.3
3,338,314	+				+1.8
3,338,314	+				-0.8
3,338,314	+				+0.8
3,338,315	-				-1.2
3,338,322	-				-2.2
3,338,333	+				+0.8
3,338,334	-				+0.1
3,338,374	+				-2.0
3,338,374	+				-0.3
3,338,390	-				-0.2
3,338,410	+				+3.9
3,338,411	-				+1.0
3,338,411	-				+0.8